CuGenDBv2

Gene ID	Lsi09G017600
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	LITAF domain-containing protein
Genome location	chr09:26328623..26330719
RNA-Seq Expression	Lsi09G017600
Synteny	Lsi09G017600
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR006629 - LPS-induced tumour necrosis factor alpha factor IPR037519 - LITAF domain containing protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039847.1 zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa]

1.2e-66

80.92

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Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVPLY GNN YQAGQIP NAIFGDPQGVPI QTMYRDTPAPF CVYCGNSGLT +RSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALP
        CPSCKEK                   VGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALP

XP_004140553.1 GSH-induced LITAF domain protein [Cucumis sativus]

8.9e-67

80.92

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Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVPLY GNN YQAGQIP NAIFGDP GVPI QTMYRDTPAPF CVYCGNSGLT +RSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALP
        CPSCKEK                   VGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALP

XP_022148974.1 GSH-induced LITAF domain protein [Momordica charantia]

5.2e-67

79.74

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Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+PLY G+NAYQAGQIPSNAI+GDPQGVPI QTM+RDTPAPFYC+YCGNSGLT VRSKISSAAVVGCM+PFMLGVCFL PSM+CLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALPA
        CP+CKEK                   VGDFEKLDRCAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALPA

XP_022954275.1 GSH-induced LITAF domain protein [Cucurbita moschata]

1.5e-66

79.74

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Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+P Y GNNAYQAGQIP NAIFG PQGVPIHQTMYRDTPAP+ CVYCGNSGLT +RSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEK                   VGDFEK D CAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALPA

XP_038906445.1 GSH-induced LITAF domain protein [Benincasa hispida]

4.3e-69

82.35

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Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+PLYDGNN YQAGQIPSNAIFGDPQGVPI QTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCM PF+LGVCFL PSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEK                   VGDFEK+DRCAVMDPP+WTQPSFALPA
Subjt:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALPA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDG7 LITAF domain-containing protein

4.3e-67

80.92

Show/hide

Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVPLY GNN YQAGQIP NAIFGDP GVPI QTMYRDTPAPF CVYCGNSGLT +RSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALP
        CPSCKEK                   VGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALP

A0A5D3DMB0 Zf-LITAF-like domain-containing protein

5.6e-67

80.92

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Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVPLY GNN YQAGQIP NAIFGDPQGVPI QTMYRDTPAPF CVYCGNSGLT +RSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALP
        CPSCKEK                   VGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALP

A0A6J1D5M9 GSH-induced LITAF domain protein

2.5e-67

79.74

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Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+PLY G+NAYQAGQIPSNAI+GDPQGVPI QTM+RDTPAPFYC+YCGNSGLT VRSKISSAAVVGCM+PFMLGVCFL PSM+CLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALPA
        CP+CKEK                   VGDFEKLDRCAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALPA

A0A6J1GS01 GSH-induced LITAF domain protein

7.4e-67

79.74

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Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+P Y GNNAYQAGQIP NAIFG PQGVPIHQTMYRDTPAP+ CVYCGNSGLT +RSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEK                   VGDFEK D CAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALPA

A0A6J1JVN9 GSH-induced LITAF domain protein

9.6e-67

79.08

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Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+P Y GNN+YQAGQIP NAIFG PQGVPIHQTMYRDTPAP+ CVYCGNSGLT +RSKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEK                   VGDFEK D CAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALPA

SwissProt top hits

e value

%identity

Alignment

Q94CD4 GSH-induced LITAF domain protein

1.9e-51

61.44

Show/hide

Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        M+K    V+GVP Y G N YQAG +P NAI+GDP G PI QT+YRDTPAPF C+YCGN+GLT++RSK   AAVV CMMPFMLG CFLCPSMDCLW+K H+
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALPA
        CP C  K                   V DFEK D C VMDPP W QPSFALPA
Subjt:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALPA

Arabidopsis top hits

e value

%identity

Alignment

AT5G13190.1 CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

1.3e-52

61.44

Show/hide

Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        M+K    V+GVP Y G N YQAG +P NAI+GDP G PI QT+YRDTPAPF C+YCGN+GLT++RSK   AAVV CMMPFMLG CFLCPSMDCLW+K H+
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALPA
        CP C  K                   V DFEK D C VMDPP W QPSFALPA
Subjt:  CPSCKEKVYYFRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALPA

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCCAAGAACGACGAGCCGGTAGTCGGAGTTCCACTCTACGACGGCAACAACGCCTATCAGGCCGGCCAGATCCCTTCCAACGCCATTTTTGGCGATCCCCAGGGGGT
TCCTATCCACCAAACCATGTACCGCGACACTCCTGCTCCGTTCTACTGTGTTTATTGTGGAAATTCCGGCCTCACCGATGTCAGATCAAAGATAAGTTCAGCTGCTGTCG
TTGGTTGTATGATGCCATTTATGTTGGGAGTATGCTTTCTTTGTCCTTCGATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTATACTAT
TTCCGGTCCTTGTTCATTCTGTCAGTTGCTTCTTGTAATCTACATATTGTTGGTGATTTTGAGAAACTGGATAGGTGTGCTGTGATGGATCCTCCACACTGGACACAGCC
AAGCTTCGCATTGCCTGCTTGA

mRNA sequence

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GGCCAATACAAACCAATCACAACTAAGAATTTATTTTCTCTTCTTATTTTCTTTCTTTATTAAATAATATTTTGACGAGAAATTTCGCCTTTTGACTTTGATCTGGAAGG
GCTTCTCGTTTCCGTTTTCTCTCCAAGTCCTCCAACAATTTTCATCGACTTCCATTCCAACAACCTTCTCAATCGCAGGCAAAGCAGAAGAGATTACAAAGCTTACCGAT
AATGTCCAAGAACGACGAGCCGGTAGTCGGAGTTCCACTCTACGACGGCAACAACGCCTATCAGGCCGGCCAGATCCCTTCCAACGCCATTTTTGGCGATCCCCAGGGGG
TTCCTATCCACCAAACCATGTACCGCGACACTCCTGCTCCGTTCTACTGTGTTTATTGTGGAAATTCCGGCCTCACCGATGTCAGATCAAAGATAAGTTCAGCTGCTGTC
GTTGGTTGTATGATGCCATTTATGTTGGGAGTATGCTTTCTTTGTCCTTCGATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTATACTA
TTTCCGGTCCTTGTTCATTCTGTCAGTTGCTTCTTGTAATCTACATATTGTTGGTGATTTTGAGAAACTGGATAGGTGTGCTGTGATGGATCCTCCACACTGGACACAGC
CAAGCTTCGCATTGCCTGCTTGATTTTGACAAGCTGCTATTTTCCCGAGTGGTTATTTTGCATTTTCTGCTGTCAGTACTTGCGATACTCTTGTGCTATTTTGTGTGATG
TTCTTGTTACACTTAGGGATAGGCAAAGTGTGGATATCAGTGCACATATACAATTGTGATAGAACCAAGTACATGTTTGTTTTTTTTTTTTTTT

Protein sequence

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MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTMYRDTPAPFYCVYCGNSGLTDVRSKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVYY
FRSLFILSVASCNLHIVGDFEKLDRCAVMDPPHWTQPSFALPA

Lsi09G017600 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome