CuGenDBv2

Gene ID	Lsi09G017660
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	light-regulated protein-like
Genome location	chr09:26416527..26417532
RNA-Seq Expression	Lsi09G017660
Synteny	Lsi09G017660
Gene Ontology terms	GO:0009507 - chloroplast (cellular component)
InterPro domains	IPR009856 - Light regulated Lir1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576101.1 Light-regulated protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-57

87.59

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Query:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQLQAA S+A PSS  LL PT K MAFSIPS SMRRHPTSQT RP LKAKASAVGQDPSTVDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAK G
Subjt:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPE
        GSV+E VDREYLQYDSPKTVFPAEACDDLGGEFCDP+
Subjt:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPE

XP_022953556.1 light-regulated protein-like [Cucurbita moschata]

7.3e-63

89.51

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Query:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQLQAA S+A PSS  LL PT K MAFSIPS SMRRHPTSQT RP LKAKASAVGQDPSTVDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSV+E VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

XP_022991991.1 light-regulated protein, chloroplastic-like [Cucurbita maxima]

5.6e-63

88.81

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Query:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQLQAA S+A PSS  LL PT K MAFS+PS SMRRHPTSQT RP LKAKASAVGQDPSTVDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSV+E VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

XP_023547464.1 light-regulated protein, chloroplastic-like [Cucurbita pepo subsp. pepo]

2.1e-62

88.81

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Query:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQLQAA S+A PSS  LL PT K MAFSIPS S RRHPTSQT RP LKAKASAVGQDPSTVDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSV+E VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

XP_038906788.1 light-regulated protein, chloroplastic-like [Benincasa hispida]

3.5e-65

92.31

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Query:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQLQAALS+A PSS SLL PTAKSMAFS+ S S+ RHPTSQTQRP LKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKK 
Subjt:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CBQ8 light-regulated protein-like

3.2e-56

84.62

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Query:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQLQAALSIAPPS  SLL PTAK MAFSI + S+ R       + TLKAKASAVGQ+PSTVDYSS+SSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         SVTEPV+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

A0A5D3DLY7 Light-regulated protein-like

2.5e-56

84.62

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Query:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQLQAALSIAPPS  SLL PTAK MAFSI + S+ R       + TLKAKASAVGQ+PSTVDYSS+SSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         SVTEPV+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

A0A6J1GNA5 light-regulated protein-like

3.5e-63

89.51

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Query:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQLQAA S+A PSS  LL PT K MAFSIPS SMRRHPTSQT RP LKAKASAVGQDPSTVDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSV+E VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

A0A6J1JSC1 light-regulated protein, chloroplastic-like

2.7e-63

88.81

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Query:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQLQAA S+A PSS  LL PT K MAFS+PS SMRRHPTSQT RP LKAKASAVGQDPSTVDYSS+SSVFPAEAC+TVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
        GSV+E VDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

Q39636 CR9 protein

2.2e-57

86.01

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Query:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
        MQ QAALSIA PS  SLL PTAKSMAFSIP+ SM R       + TLKAKASAVGQDPSTVDYSS+SSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG
Subjt:  MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKG

Query:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
         SVTEPV+REYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY
Subjt:  GSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

SwissProt top hits

e value

%identity

Alignment

Q03200 Light-regulated protein, chloroplastic

9.1e-24

61.11

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Query:  LKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGS--VTEPVDREYLQYDSPKTVFPAEACDDLGGEFC
        ++A A+AV  + + VDYSS  SVFP EACD +GGEAC+V+MYPE KL   A    S    E VDR+YL YD P TVFP EACDDLGGEFC
Subjt:  LKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGS--VTEPVDREYLQYDSPKTVFPAEACDDLGGEFC

Q96500 Light-regulated protein 1, chloroplastic

1.1e-24

46.85

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Query:  LQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLK----AKASAVGQDPSTVDY-SSISSVFPAEACDTVGGEACDVEMYPEVKLKPEA
        +Q AL I P    ++L P   S++ S   + +  H T  ++  +L+    + +S++  DP+TVDY SSI SVFPAEAC+ + G AC  ++YPEVKL  + 
Subjt:  LQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLK----AKASAVGQDPSTVDY-SSISSVFPAEACDTVGGEACDVEMYPEVKLKPEA

Query:  KKGGSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK
              +EPVDREY +Y+SPKTVF  EACDDLGGEFC+P++QK
Subjt:  KKGGSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G26740.1 CCR-like

7.6e-26

46.85

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Query:  LQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLK----AKASAVGQDPSTVDY-SSISSVFPAEACDTVGGEACDVEMYPEVKLKPEA
        +Q AL I P    ++L P   S++ S   + +  H T  ++  +L+    + +S++  DP+TVDY SSI SVFPAEAC+ + G AC  ++YPEVKL  + 
Subjt:  LQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLK----AKASAVGQDPSTVDY-SSISSVFPAEACDTVGGEACDVEMYPEVKLKPEA

Query:  KKGGSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK
              +EPVDREY +Y+SPKTVF  EACDDLGGEFC+P++QK
Subjt:  KKGGSVTEPVDREYLQYDSPKTVFPAEACDDLGGEFCDPEYQK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCAGTTGCAGGCAGCTCTTTCCATAGCACCTCCATCATCATACTCCCTCCTCGCACCAACTGCCAAATCAATGGCCTTCTCAATCCCATCTAGCTCCATGCGAAGGCA
CCCCACTTCTCAAACTCAACGTCCCACACTAAAAGCAAAGGCAAGTGCGGTCGGACAAGACCCTTCAACTGTTGACTACAGCTCCATCTCCTCTGTTTTTCCAGCAGAGG
CTTGTGACACTGTTGGAGGTGAAGCTTGTGATGTGGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGGCCAAAAAGGGAGGTAGTGTTACAGAGCCAGTTGATAGAGAG
TATCTACAATATGACAGTCCCAAGACAGTCTTTCCAGCGGAGGCTTGTGATGATCTGGGTGGTGAATTCTGCGATCCAGAGTATCAAAAAGGAGTTTACTAG

mRNA sequence

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GGGGGGGGGAGTGAACCTTATCCAGTCACAAGATATCTTGCCATCTTTATCTGTTTAACCTTATAAATCCGAATTCTACTCTAAAGATACATCCAAGCACCAACTTCACA
GCAGACCGAACCATTCTTCATCATGCAGTTGCAGGCAGCTCTTTCCATAGCACCTCCATCATCATACTCCCTCCTCGCACCAACTGCCAAATCAATGGCCTTCTCAATCC
CATCTAGCTCCATGCGAAGGCACCCCACTTCTCAAACTCAACGTCCCACACTAAAAGCAAAGGCAAGTGCGGTCGGACAAGACCCTTCAACTGTTGACTACAGCTCCATC
TCCTCTGTTTTTCCAGCAGAGGCTTGTGACACTGTTGGAGGTGAAGCTTGTGATGTGGAAATGTATCCTGAAGTAAAGCTAAAACCAGAGGCCAAAAAGGGAGGTAGTGT
TACAGAGCCAGTTGATAGAGAGTATCTACAATATGACAGTCCCAAGACAGTCTTTCCAGCGGAGGCTTGTGATGATCTGGGTGGTGAATTCTGCGATCCAGAGTATCAAA
AAGGAGTTTACTAGAAAATGTTATTGGGAACTAGGACTTATAAACAAGGGTTGAGCCCAGGGTCAGTTTTTTTCTTTTCTTCCCCTCTTTGCCGACTCTCTTATGCTTGT
AAATGATTAGTAGACTACGAAGTTCTTCAATGCTGATTAATACTTGATATTCTGAAAGAAAATAAAGACCATCTCTTCTCAGATAAATACAAGATATGGTAATGGAACAA
CAAAGGGAACTTTCTTCGTGATCA

Protein sequence

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MQLQAALSIAPPSSYSLLAPTAKSMAFSIPSSSMRRHPTSQTQRPTLKAKASAVGQDPSTVDYSSISSVFPAEACDTVGGEACDVEMYPEVKLKPEAKKGGSVTEPVDRE
YLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY

Lsi09G017660 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome