; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G017730 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G017730
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description40S ribosomal protein S27
Genome locationchr09:26489893..26491232
RNA-Seq ExpressionLsi09G017730
SyntenyLsi09G017730
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0042788 - polysomal ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000592 - Ribosomal protein S27
IPR011332 - Zinc-binding ribosomal protein
IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_002512685.1 40S ribosomal protein S27-2 [Ricinus communis]4.3e-4298.84Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

XP_006295333.1 40S ribosomal protein S27-2 [Capsella rubella]4.3e-4298.84Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+AKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

XP_008459925.1 PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo]1.9e-42100Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

XP_022953224.1 uncharacterized protein LOC111455834 [Cucurbita moschata]4.3e-4298.84Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

XP_022991567.1 40S ribosomal protein S27-2-like [Cucurbita maxima]4.3e-4298.84Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

TrEMBL top hitse value%identityAlignment
A0A0A0K9G0 40S ribosomal protein S279.3e-43100Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

A0A1S3CCJ2 40S ribosomal protein S279.3e-43100Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

A0A5D3DLW4 40S ribosomal protein S279.3e-43100Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

A0A6J1JTM3 40S ribosomal protein S272.1e-4298.84Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRA+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

E5GB53 40S ribosomal protein S279.3e-43100Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

SwissProt top hitse value%identityAlignment
O64650 40S ribosomal protein S27-17.6e-4294.05Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGG+AKLTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK

P47903 40S ribosomal protein S279.6e-3783.72Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C +VLC PTG   +LTEGCSFRRK D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

Q8L953 40S ribosomal protein S27-34.9e-4192.86Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+A+L EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK

Q96564 40S ribosomal protein S271.7e-4193.02Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQTVLCQPTGG+A+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

Q9M2F1 40S ribosomal protein S27-27.3e-4597.67Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+AKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

Arabidopsis top hitse value%identityAlignment
AT2G45710.1 Zinc-binding ribosomal protein family protein5.4e-4394.05Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGG+AKLTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK

AT3G61110.1 ribosomal protein S275.2e-4697.67Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+AKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

AT3G61111.1 Zinc-binding ribosomal protein family protein3.4e-3782.56Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG CQ VLCQPTGG+AKLT GCSFR+  D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD

AT5G47930.1 Zinc-binding ribosomal protein family protein3.5e-4292.86Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+A+L EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTTCAAAACGATATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGT
GAAGTGCCAAGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGAGGGCGTGCTA
AGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAA
mRNA sequenceShow/hide mRNA sequence
CCTCTGCCTGATGGCAGCGCGAGTGCGTAGCCCTAGGCACTTCAAAAACTAAAGGCTGAGATTCATTTCTAAAGAAATCAAACGGTCCACAATTTCCAGCTGCTCCTTTA
TATTCATCCTAGACGGCGCTCTTATCCTCTTTCTTCACATTCGTCGCACCGCCCTGTTTCTCTCGCGAACTGTCGTTGGGATTTTAGGGTTCGCGATCCAGACGGTTCCT
TCCTGATCATCATGGTTCTTCAAAACGATATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTC
TTCATGGACGTGAAGTGCCAAGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTCGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGG
AGGGCGTGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAATTTCCTTGGCTCAGAATTGGATTGTAGTAGGATAAGGATGGGTGGGTTTGAATTTTGA
TATTGCAATTGAGCATATTTTGTCTTTGTCTCGGGTTTTTCTACATTTTGGTTGTTGATTATTCAATTTTGCTTGAGAAGAAAGAGCATTTTGGCACCCCTGTTGCAGTA
CGTTAATTTAATGTTGTCAATGAAACTAAGTTAAAGTCTTGTTTGAAGTAATTCACATCGAGTGTTTTGCGTGTCCCCCAATTCTATTTTAATTGATTGATCTGTTTTGA
TTTGCTTCCCATTACTTCCATGAGATGTAAAATTAGATTGTATTTTCTGCTGCTTTTAATGTTTGAAATATTGAACTGTTCTTTCTCAAGGGGTTTGTCATTTGTAGCCG
TGAGTTGCTTGTATAGTACTAAAGAGATTTGTGGTTCTAATCCTCCCCTCCTTATTGTACTAGAATAGTTTGTCATTTGCAAGGCATTAGACTTTCTTGTTTTTGCTTCA
GTGTCATAGTGTGTAGTGATTTTCCAATTGCCCCTCTTGATCCTTCTTATTATGATGTCGTGTAGTGGTTGCC
Protein sequenceShow/hide protein sequence
MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD