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Lsi09G017740 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G017740
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRibosome biogenesis NEP1-like protein
Genome locationchr09:26494253..26495163
RNA-Seq ExpressionLsi09G017740
SyntenyLsi09G017740
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33694.1 hypothetical protein [Cucumis melo subsp. melo]6.3e-6387.33Show/hide
Query:  MLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSA
        MLV TRIQG R FASSTTAP AN  ++SSSSSKGGS  SEYMKGEYAPIYIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSA
Subjt:  MLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSA

Query:  DKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        DKFINKSFLRKVAHIQD+ KTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Subjt:  DKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

KAA0039866.1 putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa]4.8e-6387.42Show/hide
Query:  MLVETRIQGKRGFASSTTAPPANI-ENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITS
        MLV TRIQG R FASSTTAP AN   ++SSSSSKGGS +SEYMKGEYAPIYIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITS
Subjt:  MLVETRIQGKRGFASSTTAPPANI-ENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITS

Query:  ADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        ADKFINKSFLRKVAHIQD+ KTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
Subjt:  ADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

XP_004140656.2 uncharacterized protein LOC101206372 [Cucumis sativus]2.0e-6483.85Show/hide
Query:  MQNKLWKSMLVETRIQGKRGFASSTTAPPA-NIENAS--SSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPE
        + NK+WKSMLVETRIQG R F+SSTT P A NI+NAS  SSSS GGS  SEYMKGEYAPIYIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPE
Subjt:  MQNKLWKSMLVETRIQGKRGFASSTTAPPA-NIENAS--SSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPE

Query:  VEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        VEDPDTVITSADKFINKSFLRKVAHIQ + KTL DPVHPDPFTRPRNAETLKTAG+DPTRR
Subjt:  VEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

XP_008459927.1 PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo]9.4e-6786.08Show/hide
Query:  MQNKLWKSMLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVED
        + NK+WKSMLV TRIQG R FASSTTAP AN  ++SSSSSKGGS  SEYMKGEYAPIYIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVED
Subjt:  MQNKLWKSMLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVED

Query:  PDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        PDTVITSADKFINKSFLRKVAHIQD+ KTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Subjt:  PDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

XP_038906484.1 uncharacterized protein LOC120092464 [Benincasa hispida]5.7e-6480.49Show/hide
Query:  MQNKLWKSMLVETRIQGKRGFASSTTAPPAN------IENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRES
        + NK+WK+MLV +RIQGKR  ASSTTAP AN        ++SSSSSKGGSS SEYMKGEYAPIYIV+GMVAVA+SIGTHTAKQQLLHSPVVN +KKKRES
Subjt:  MQNKLWKSMLVETRIQGKRGFASSTTAPPAN------IENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRES

Query:  IPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        IPEV+DPDT+I SA+KFINKSFLRKVAHIQ++ KTLPDPVHP+PFTRPRNAETLKTAGVDPTRR
Subjt:  IPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

TrEMBL top hitse value%identityAlignment
A0A0A0KC39 Uncharacterized protein9.5e-6583.85Show/hide
Query:  MQNKLWKSMLVETRIQGKRGFASSTTAPPA-NIENAS--SSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPE
        + NK+WKSMLVETRIQG R F+SSTT P A NI+NAS  SSSS GGS  SEYMKGEYAPIYIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPE
Subjt:  MQNKLWKSMLVETRIQGKRGFASSTTAPPA-NIENAS--SSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPE

Query:  VEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        VEDPDTVITSADKFINKSFLRKVAHIQ + KTL DPVHPDPFTRPRNAETLKTAG+DPTRR
Subjt:  VEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

A0A1S3CBE5 uncharacterized protein LOC1034988994.6e-6786.08Show/hide
Query:  MQNKLWKSMLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVED
        + NK+WKSMLV TRIQG R FASSTTAP AN  ++SSSSSKGGS  SEYMKGEYAPIYIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVED
Subjt:  MQNKLWKSMLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVED

Query:  PDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        PDTVITSADKFINKSFLRKVAHIQD+ KTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Subjt:  PDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

A0A5D3DLZ1 Putative Ribosome biogenesis protein NEP1-like2.3e-6387.42Show/hide
Query:  MLVETRIQGKRGFASSTTAPPANI-ENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITS
        MLV TRIQG R FASSTTAP AN   ++SSSSSKGGS +SEYMKGEYAPIYIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITS
Subjt:  MLVETRIQGKRGFASSTTAPPANI-ENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITS

Query:  ADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        ADKFINKSFLRKVAHIQD+ KTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
Subjt:  ADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

A0A6J1D5I0 uncharacterized protein LOC111017496 isoform X11.2e-5679.25Show/hide
Query:  YMQNKLWKSMLV--ETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPE
        + + KLWKSMLV   +RI+GKR FASSTTA         SSSS   SSKSEYMKGEYAPIYIVMGMV VA++IGTHTAKQQLLHSPVV L+KKKRESIPE
Subjt:  YMQNKLWKSMLV--ETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPE

Query:  VEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPT
        V+DPDTVITSADKF+NKSFLRKVAHIQD+ KTL DP HPDPFTRPRNAETLKTAGVDPT
Subjt:  VEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPT

E5GB52 Uncharacterized protein3.1e-6387.33Show/hide
Query:  MLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSA
        MLV TRIQG R FASSTTAP AN  ++SSSSSKGGS  SEYMKGEYAPIYIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSA
Subjt:  MLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSA

Query:  DKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR
        DKFINKSFLRKVAHIQD+ KTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Subjt:  DKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G63060.1 unknown protein1.7e-2652.38Show/hide
Query:  GEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKT-LPDPVHPDPFTRPRNAETLKT
        GE+AP+ I+ G V +A+ +  H+ KQQL+H+P ++  K +R ++ EV+DP+  ++SADKFINKS+LRKV  IQD  K  L DP  P+PFT PRNAETL +
Subjt:  GEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKT-LPDPVHPDPFTRPRNAETLKT

Query:  AGVDP
         GV P
Subjt:  AGVDP

AT5G07330.1 unknown protein1.2e-2235.86Show/hide
Query:  IQGKRGFASSTTAPPANIENASSSSSKG--GSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFI
        +Q  R +  +TT P +   + +++   G   ++ +   KG++ P+Y+ +G+++++++ G +TA   L  +P V +NKK RE++PE+EDPD V+  AD+F 
Subjt:  IQGKRGFASSTTAPPANIENASSSSSKG--GSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFI

Query:  NKSFLRKVAHIQ--DNPKTLPDPVHPDPFTRPRNAETLKTAGVDP
        N+S+ RK+AH+Q  D    + DP+  D F     A TLK  GVDP
Subjt:  NKSFLRKVAHIQ--DNPKTLPDPVHPDPFTRPRNAETLKTAGVDP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAATATTTATATATGCAGAATAAGTTGTGGAAATCAATGCTTGTTGAAACTAGGATCCAAGGGAAGCGTGGTTTCGCCTCGTCCACTACGGCCCCACCGGCTAATATTGA
AAATGCTTCTTCATCTTCTTCTAAGGGCGGTTCTAGTAAGAGCGAGTACATGAAAGGCGAGTACGCCCCAATCTACATTGTGATGGGGATGGTGGCGGTGGCTTTGTCCA
TCGGAACCCACACCGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTTAACCTGAACAAGAAGAAGAGGGAGAGCATTCCAGAGGTGGAGGATCCCGACACCGTCATTACT
TCCGCCGACAAATTTATCAACAAATCCTTTCTTAGGAAGGTCGCTCACATCCAGGACAACCCCAAGACGCTACCGGATCCCGTTCACCCCGACCCATTTACCCGGCCACG
TAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGACGTTGA
mRNA sequenceShow/hide mRNA sequence
AAATATTTATATATGCAGAATAAGTTGTGGAAATCAATGCTTGTTGAAACTAGGATCCAAGGGAAGCGTGGTTTCGCCTCGTCCACTACGGCCCCACCGGCTAATATTGA
AAATGCTTCTTCATCTTCTTCTAAGGGCGGTTCTAGTAAGAGCGAGTACATGAAAGGCGAGTACGCCCCAATCTACATTGTGATGGGGATGGTGGCGGTGGCTTTGTCCA
TCGGAACCCACACCGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTTAACCTGAACAAGAAGAAGAGGGAGAGCATTCCAGAGGTGGAGGATCCCGACACCGTCATTACT
TCCGCCGACAAATTTATCAACAAATCCTTTCTTAGGAAGGTCGCTCACATCCAGGACAACCCCAAGACGCTACCGGATCCCGTTCACCCCGACCCATTTACCCGGCCACG
TAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGACGTTGATGAAACATCCTCCCAACTATTTATTTATTTATTTATTTATTTATTTATTTTCTTCGTGATA
TGATATGTGTATATATATATATATATATTTAAATATTATGGGCCCTTCTGCTTTTCTCTTCACTTTCTAGTATTGGGTGAAGACTGAAGTATAGTACTAGCTACTGCTAG
GGAATGCGGTCCTCATTTGTTTAATTAATTTTCTTTTTCGTATAATATAATAAAAGCAATTTAATTGGATAACCCAAA
Protein sequenceShow/hide protein sequence
KYLYMQNKLWKSMLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVIT
SADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR