; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G017790 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G017790
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionU2 small nuclear ribonucleoprotein A'
Genome locationchr09:26544333..26551745
RNA-Seq ExpressionLsi09G017790
SyntenyLsi09G017790
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0015030 - Cajal body (cellular component)
GO:0030620 - U2 snRNA binding (molecular function)
InterPro domainsIPR003603 - U2A'/phosphoprotein 32 family A, C-terminal
IPR032675 - Leucine-rich repeat domain superfamily
IPR044640 - U2 small nuclear ribonucleoprotein A'


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140564.3 U2 small nuclear ribonucleoprotein A' [Cucumis sativus]2.8e-10486.05Show/hide
Query:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
        GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT                +LTNNRLVNLVEIDPLASL KLQFLSLLDNNITK
Subjt:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK

Query:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE
        KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGE+E  SKPVEEKQT NVSAPTPEQIIAIKAAIVNSQTLEEVARLE
Subjt:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE

Query:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ
        QALKSGQLPADLNLLEDNT  N TKD DDKTMSD+GDEE+V       +NDESTPMEQ
Subjt:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ

XP_022148876.1 U2 small nuclear ribonucleoprotein A' [Momordica charantia]9.8e-11088.37Show/hide
Query:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
        GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT                +LTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
Subjt:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK

Query:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE
        KPNYRLYVIHKLKS+RVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFVPGE+EN SKP EEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE
Subjt:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE

Query:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ
        QALKSGQLPADLNLLEDNTV NTTKDTDD+TMSD  DE+NVSKDVKEQ NDES PMEQ
Subjt:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ

XP_022960458.1 U2 small nuclear ribonucleoprotein A' [Cucurbita moschata]2.1e-11289.92Show/hide
Query:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
        GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT                +LTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
Subjt:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK

Query:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE
        KPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGE+EN SKPVEEKQTS +SAPTPEQIIAIKAAIVNSQTLEEVARLE
Subjt:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE

Query:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ
        QALKSGQLPADLNLLEDNTV NTTKDTDDKTMSD GDEENVSKD KEQSNDESTPMEQ
Subjt:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ

XP_023005060.1 U2 small nuclear ribonucleoprotein A' [Cucurbita maxima]6.1e-11289.53Show/hide
Query:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
        GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT                +LTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
Subjt:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK

Query:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE
        KPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGE+EN SKPVEEKQTS +SAPTPEQIIAIKAAIVNSQTLEEVARLE
Subjt:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE

Query:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ
        QALKSGQLPADLNLLEDNTV NTTKDTDDKT+SD GDEENVSKD KEQSNDESTPMEQ
Subjt:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ

XP_038907085.1 U2 small nuclear ribonucleoprotein A' [Benincasa hispida]1.6e-11290.31Show/hide
Query:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
        GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT                +LTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
Subjt:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK

Query:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE
        KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVK FVPGE+EN SKPVEEKQTSNVSAPT EQIIAIKAAIVNSQTLEEVARLE
Subjt:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE

Query:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ
        QALKSGQLPADLNLL+DNTVPNTTK+TDDKTMSD+GDEENVSKDVKEQSNDE TPMEQ
Subjt:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ

TrEMBL top hitse value%identityAlignment
A0A1S3CAU7 U2 small nuclear ribonucleoprotein A'4.3e-10385.27Show/hide
Query:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
        GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT                +LTNNRLVNLVEIDPLASL KLQFLSLLDNNITK
Subjt:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK

Query:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE
        KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV GE+E  SKPVEEKQT NVSAPTPEQIIAIKAAIVNSQTLEEVARLE
Subjt:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE

Query:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ
        QALKSGQLPADLNLLEDNT PN TKD DDKT S +GDEE+V       +NDESTPMEQ
Subjt:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ

A0A6J1D6P1 U2 small nuclear ribonucleoprotein A'4.7e-11088.37Show/hide
Query:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
        GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT                +LTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
Subjt:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK

Query:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE
        KPNYRLYVIHKLKS+RVLDFKKVRNKERLEAR+LFSSKEVEEEAK ESVKTFVPGE+EN SKP EEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE
Subjt:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE

Query:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ
        QALKSGQLPADLNLLEDNTV NTTKDTDD+TMSD  DE+NVSKDVKEQ NDES PMEQ
Subjt:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ

A0A6J1H905 U2 small nuclear ribonucleoprotein A'1.0e-11289.92Show/hide
Query:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
        GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT                +LTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
Subjt:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK

Query:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE
        KPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGE+EN SKPVEEKQTS +SAPTPEQIIAIKAAIVNSQTLEEVARLE
Subjt:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE

Query:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ
        QALKSGQLPADLNLLEDNTV NTTKDTDDKTMSD GDEENVSKD KEQSNDESTPMEQ
Subjt:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ

A0A6J1KWC8 U2 small nuclear ribonucleoprotein A'3.0e-11289.53Show/hide
Query:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
        GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT                +LTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
Subjt:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK

Query:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE
        KPNYRLYVIHKL+S+RVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGE+EN SKPVEEKQTS +SAPTPEQIIAIKAAIVNSQTLEEVARLE
Subjt:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE

Query:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ
        QALKSGQLPADLNLLEDNTV NTTKDTDDKT+SD GDEENVSKD KEQSNDESTPMEQ
Subjt:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ

E5GB46 U2 small nuclear ribonucleoprotein a4.3e-10385.27Show/hide
Query:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
        GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT                +LTNNRLVNLVEIDPLASL KLQFLSLLDNNITK
Subjt:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK

Query:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE
        KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFV GE+E  SKPVEEKQT NVSAPTPEQIIAIKAAIVNSQTLEEVARLE
Subjt:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARLE

Query:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ
        QALKSGQLPADLNLLEDNT PN TKD DDKT S +GDEE+V       +NDESTPMEQ
Subjt:  QALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQ

SwissProt top hitse value%identityAlignment
P09661 U2 small nuclear ribonucleoprotein A'2.5e-3950.71Show/hide
Query:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRI----------------TLLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
        G KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI                 +LTNN LV L ++DPLASL  L +LS+L N +T 
Subjt:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRI----------------TLLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK

Query:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVAR
        K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KTF PG       P ++K+      P+P  + AIK AI N+ TL EV R
Subjt:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVAR

Query:  LEQALKSGQLP
        L+  L+SGQ+P
Subjt:  LEQALKSGQLP

P43333 U2 small nuclear ribonucleoprotein A'1.9e-6866.24Show/hide
Query:  ASFILSSTHFLTPF----FSSPGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVE
        A  I  S HF            GNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRIT                +LTNNRLVNLVE
Subjt:  ASFILSSTHFLTPF----FSSPGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVE

Query:  IDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPE
        IDPLAS+PKLQ+LSLLDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK S +     E++  S+  E  +T  V APT E
Subjt:  IDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPE

Query:  QIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        QI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  QIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL

P57784 U2 small nuclear ribonucleoprotein A'2.1e-3850.24Show/hide
Query:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRI----------------TLLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
        G KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI                 +LTNN LV L ++DPLASL  L +LS+L N +T 
Subjt:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRI----------------TLLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK

Query:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVAR
        K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KTF PG       P ++K+      P+   + AIK AI N+ TL EV R
Subjt:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVAR

Query:  LEQALKSGQLP
        L+  L+SGQ+P
Subjt:  LEQALKSGQLP

Q4R8Y8 U2 small nuclear ribonucleoprotein A'2.5e-3950.71Show/hide
Query:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRI----------------TLLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
        G KI VIENLGAT DQFDAID SDNEI KL+  P L RL TLL+NNNRI                 +LTNN LV L ++DPLASL  L +LS+L N +T 
Subjt:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRI----------------TLLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK

Query:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVAR
        K +YRLYVI+K+  VRVLDF+KV+ KER EA  +F  K   + AK      KTF PG       P ++K+      P+P  + AIK AI N+ TL EV R
Subjt:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAK--KESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVAR

Query:  LEQALKSGQLP
        L+  L+SGQ+P
Subjt:  LEQALKSGQLP

Q9BLB6 Probable U2 small nuclear ribonucleoprotein A'9.4e-3141.71Show/hide
Query:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK
        G KI VIEN+G T DQFD IDL+DN+I KL+N P  +RL TL ++NNRI                  LTNN +  L +I+PLA   KL++++ + N IT 
Subjt:  GNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVEIDPLASLPKLQFLSLLDNNITK

Query:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVAR
        K NYR+Y+I+KL +VRV+DF +VR  ER  A+ +F  K  ++  +A ++SV T  P E+E       E  +   +  T E    IK AI N+++L EV  
Subjt:  KPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEE--EAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVAR

Query:  LEQALKSGQLP
        L+  L SG++P
Subjt:  LEQALKSGQLP

Arabidopsis top hitse value%identityAlignment
AT1G09760.1 U2 small nuclear ribonucleoprotein A1.4e-6966.24Show/hide
Query:  ASFILSSTHFLTPF----FSSPGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVE
        A  I  S HF            GNKI VIENLGATEDQFD IDLSDNEIVKLEN PYLNRLGTLLINNNRIT                +LTNNRLVNLVE
Subjt:  ASFILSSTHFLTPF----FSSPGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRIT----------------LLTNNRLVNLVE

Query:  IDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPE
        IDPLAS+PKLQ+LSLLDNNITKK NYRLYVIHKLKS+RVLDF K++ KER EA +LFSSKE EEE KK S +     E++  S+  E  +T  V APT E
Subjt:  IDPLASLPKLQFLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPE

Query:  QIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL
        QI+AIKAAI+NSQT+EE+ARLEQALK GQ+PA L
Subjt:  QIIAIKAAIVNSQTLEEVARLEQALKSGQLPADL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTTGTCTATATTTTCTCAACTCTTGCTTCTTTCATTCTCTCGAGCACACATTTCTTAACTCCTTTCTTCTCGTCTCC
AGGAAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGACCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTGAAGCTGGAAAATATGCCATATCTTA
ATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCTTCTTACAAACAACAGACTTGTGAACTTGGTAGAGATCGATCCACTGGCATCCCTTCCAAAACTTCAG
TTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAACTATAGATTATATGTCATTCACAAGTTAAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAA
GGAGAGATTGGAGGCTAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAGAAGGAATCTGTGAAGACGTTTGTTCCAGGTGAGTTAGAGAATACATCCAAAC
CTGTGGAGGAGAAACAAACTTCAAACGTGTCTGCACCAACACCGGAGCAGATAATAGCTATTAAGGCGGCCATTGTAAATTCTCAAACTCTTGAAGAAGTTGCGAGATTA
GAACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTTTGGAAGATAATACCGTGCCAAACACCACGAAAGATACAGACGATAAGACAATGTCTGATAATGG
AGACGAAGAAAATGTATCCAAGGATGTTAAAGAGCAATCGAATGATGAATCTACACCTATGGAGCAGTTTGAGAAGTCTAAGTATGGCACTTCCCAGCCTGGGGATGCTA
GGCGGCTCGTTTGCCTCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCATTAAAGAGCGAGAACTGGACCTTCGAGGTTGTCTATATTTTCTCAACTCTTGCTTCTTTCATTCTCTCGAGCACACATTTCTTAACTCCTTTCTTCTCGTCTCC
AGGAAACAAGATAGCAGTGATAGAAAACCTAGGTGCCACCGAGGACCAATTTGATGCCATTGATTTGTCTGATAATGAGATTGTGAAGCTGGAAAATATGCCATATCTTA
ATCGATTGGGCACATTGCTGATCAATAATAATAGAATCACTCTTCTTACAAACAACAGACTTGTGAACTTGGTAGAGATCGATCCACTGGCATCCCTTCCAAAACTTCAG
TTTCTTAGTTTGTTGGATAACAATATTACGAAGAAGCCAAACTATAGATTATATGTCATTCACAAGTTAAAGTCAGTCCGGGTGCTTGATTTCAAGAAAGTCAGAAACAA
GGAGAGATTGGAGGCTAGGAATTTATTTTCATCAAAAGAAGTTGAAGAAGAGGCAAAGAAGGAATCTGTGAAGACGTTTGTTCCAGGTGAGTTAGAGAATACATCCAAAC
CTGTGGAGGAGAAACAAACTTCAAACGTGTCTGCACCAACACCGGAGCAGATAATAGCTATTAAGGCGGCCATTGTAAATTCTCAAACTCTTGAAGAAGTTGCGAGATTA
GAACAGGCGCTCAAGTCAGGTCAGTTACCTGCAGATTTGAATCTTTTGGAAGATAATACCGTGCCAAACACCACGAAAGATACAGACGATAAGACAATGTCTGATAATGG
AGACGAAGAAAATGTATCCAAGGATGTTAAAGAGCAATCGAATGATGAATCTACACCTATGGAGCAGTTTGAGAAGTCTAAGTATGGCACTTCCCAGCCTGGGGATGCTA
GGCGGCTCGTTTGCCTCTTTTAA
Protein sequenceShow/hide protein sequence
MPLKSENWTFEVVYIFSTLASFILSSTHFLTPFFSSPGNKIAVIENLGATEDQFDAIDLSDNEIVKLENMPYLNRLGTLLINNNRITLLTNNRLVNLVEIDPLASLPKLQ
FLSLLDNNITKKPNYRLYVIHKLKSVRVLDFKKVRNKERLEARNLFSSKEVEEEAKKESVKTFVPGELENTSKPVEEKQTSNVSAPTPEQIIAIKAAIVNSQTLEEVARL
EQALKSGQLPADLNLLEDNTVPNTTKDTDDKTMSDNGDEENVSKDVKEQSNDESTPMEQFEKSKYGTSQPGDARRLVCLF