CuGenDBv2

Gene ID	Lsi09G018000
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Vacuolar sorting-associated protein 62
Genome location	chr09:26744607..26748970
RNA-Seq Expression	Lsi09G018000
Synteny	Lsi09G018000
Gene Ontology terms	NA
InterPro domains	IPR014807 - Cytochrome c oxidase assembly factor 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039892.1 Vacuolar sorting-associated protein 62 [Cucumis melo var. makuwa]

5.8e-92

91.53

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Query:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH
        MLAKRF S+FKRS  P +SS+SIKPSE+ VNK WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAV DAIGEPIAKGPWYNASLAVAH
Subjt:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR
        KRHSLSCTFPVSGPQG GILQLKAVRNGEDSWISFLRPRDWDIL+MDALL+VP NEGKQKTLRINLTEKFAPAACVSCT CQPPETEKR
Subjt:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR

XP_004140577.1 uncharacterized protein LOC101206927 [Cucumis sativus]

2.0e-92

91.01

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Query:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH
        MLAKRF S+FKRS  P +SS+SIKP+E+ VNK WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEK RNNQAVIDAIGEPI KGPWYNASLAVAH
Subjt:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR
        KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDIL+MDALL+VP NEGKQKTLRINL+EKFAPAACVSCTDCQPPETEKR
Subjt:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR

XP_008459968.1 PREDICTED: uncharacterized protein LOC103498925 isoform X1 [Cucumis melo]

5.8e-92

91.53

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Query:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH
        MLAKRF S+FKRS  P +SS+SIKPSE+ VNK WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAV DAIGEPIAKGPWYNASLAVAH
Subjt:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR
        KRHSLSCTFPVSGPQG GILQLKAVRNGEDSWISFLRPRDWDIL+MDALL+VP NEGKQKTLRINLTEKFAPAACVSCT CQPPETEKR
Subjt:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR

XP_038876218.1 uncharacterized protein LOC120068500 isoform X1 [Benincasa hispida]

5.4e-98

96.3

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Query:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH
        MLAKRFVS+FKRSP P +SSSSIKPSEDGVNK WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH
Subjt:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR
        KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKT+RINLTEKFAPAACVSCTDCQPPETE R
Subjt:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR

XP_038876219.1 uncharacterized protein LOC120068500 isoform X2 [Benincasa hispida]

3.9e-96

95.77

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Query:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH
        MLAKRFVS+FKRSP P  +SSSIKPSEDGVNK WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH
Subjt:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR
        KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKT+RINLTEKFAPAACVSCTDCQPPETE R
Subjt:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KF26 Uncharacterized protein

9.6e-93

91.01

Show/hide

Query:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH
        MLAKRF S+FKRS  P +SS+SIKP+E+ VNK WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEK RNNQAVIDAIGEPI KGPWYNASLAVAH
Subjt:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR
        KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDIL+MDALL+VP NEGKQKTLRINL+EKFAPAACVSCTDCQPPETEKR
Subjt:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR

A0A1S3CBF0 uncharacterized protein LOC103498925 isoform X1

2.8e-92

91.53

Show/hide

Query:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH
        MLAKRF S+FKRS  P +SS+SIKPSE+ VNK WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAV DAIGEPIAKGPWYNASLAVAH
Subjt:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR
        KRHSLSCTFPVSGPQG GILQLKAVRNGEDSWISFLRPRDWDIL+MDALL+VP NEGKQKTLRINLTEKFAPAACVSCT CQPPETEKR
Subjt:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR

A0A5D3DMW4 Vacuolar sorting-associated protein 62

2.8e-92

91.53

Show/hide

Query:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH
        MLAKRF S+FKRS  P +SS+SIKPSE+ VNK WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAV DAIGEPIAKGPWYNASLAVAH
Subjt:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR
        KRHSLSCTFPVSGPQG GILQLKAVRNGEDSWISFLRPRDWDIL+MDALL+VP NEGKQKTLRINLTEKFAPAACVSCT CQPPETEKR
Subjt:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR

A0A6J1GQN1 uncharacterized protein LOC111456591 isoform X1

4.5e-90

86.39

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Query:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH
        MLAKR +S+FKRSP P +SSSS++PSE+GVNK WGR AVSFVL+TVTGGVALSALDDLAIYHSCSSKAIEKA+NN+A+IDAIGEPI KGPWYNASLAVAH
Subjt:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAP--AACVSCTDCQPPETEKR
        KRHSLSCTFPVSGPQGTGI+QLKAVRNGE+SWISFLRPRDWDILIMDALLHVP NEGKQ+T+RINLTEKFAP  AACV+CTDCQ PE EKR
Subjt:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAP--AACVSCTDCQPPETEKR

A0A6J1JQM9 uncharacterized protein LOC111488050 isoform X1

2.4e-91

87.96

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Query:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH
        MLAKRF+S+FKRSP P +SSSS++PSE+GVNK WGRKAVSFVL+TVTGGVALSALDDLAIYHSCSSKAIEKA+NN+A+IDAIGEPI KGPWYNASLAVAH
Subjt:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAH

Query:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAA--CVSCTDCQPPETEKR
        KRHSLSCTFPVSGPQGTGI+QLKAVRNGEDSWISFLRPRDWDILIMDALLHVP NEGKQ+TLRINLTEKFAPAA  CV+CTDCQ P  EKR
Subjt:  KRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAA--CVSCTDCQPPETEKR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G20390.1 unknown protein

1.0e-62

64.71

Show/hide

Query:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNKWGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAHK
        M A+RF S FK      SS+SS   +   +  +GRKAVSFVLITVTGGVALSALDDL+IY  CSSKA+EK  N++ +I+AIGEPI KGPWYNASLAV+H+
Subjt:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNKWGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAHK

Query:  RHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEK
        RHS+SC+FPV GPQGTGIL LKAVRNGEDS   FL+ RDWDILIMDAL+HVP+NEG Q+TLRIN+T+   P+        +P E EK
Subjt:  RHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEK

AT2G20390.2 unknown protein

2.9e-57

54.26

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Query:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNKWGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAHK
        M A+RF S FK      SS+SS   +   +  +GRKAVSFVLITVTGGVALSALDDL+IY  CSSKA+EK  N++ +I+AIGEPI KGPWYNASLAV+H+
Subjt:  MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNKWGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAHK

Query:  RHSLSCTFPVSGPQGTGILQLKAVRNG------------------------------------EDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRIN
        RHS+SC+FPV GPQGTGIL LKAVRNG                                    EDS   FL+ RDWDILIMDAL+HVP+NEG Q+TLRIN
Subjt:  RHSLSCTFPVSGPQGTGILQLKAVRNG------------------------------------EDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRIN

Query:  LTEKFAPAACVSCTDCQPPETEK
        +T+   P+        +P E EK
Subjt:  LTEKFAPAACVSCTDCQPPETEK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCTGGCGAAAAGGTTCGTTTCCATGTTCAAGCGCTCTCCAAATCCACGGTCTTCCAGCAGTTCCATAAAGCCATCGGAGGATGGGGTGAATAAATGGGGTCGGAAAGC
AGTCTCTTTTGTACTTATTACTGTTACTGGTGGTGTAGCTTTGAGTGCTTTAGATGACCTTGCCATTTATCATAGCTGTAGCAGCAAAGCCATAGAGAAAGCCAGAAACA
ATCAAGCAGTTATAGATGCTATTGGAGAACCCATTGCTAAAGGTCCATGGTACAATGCATCACTTGCAGTAGCTCATAAGAGACATTCTCTATCCTGCACGTTTCCAGTA
TCAGGACCACAAGGCACAGGGATCCTCCAACTGAAGGCAGTTCGTAATGGAGAGGATTCCTGGATTTCTTTTCTCCGGCCTCGAGACTGGGACATTCTGATCATGGATGC
TCTCCTTCATGTTCCTGCAAACGAAGGTAAGCAGAAAACATTGCGTATTAACCTCACTGAGAAGTTTGCCCCCGCTGCTTGTGTCTCATGCACTGACTGTCAGCCTCCAG
AGACAGAGAAGAGATGA

mRNA sequence

Show/hide mRNA sequence

CAATACAAGACACGTATCATGAAATTAAAGACAAATGACTTTATTTTATTGAGGAAGCGCTGAGCGATAGAAGGAGCAAGGAACCCCAAAGCTGAAAATGCTGGCGAAAA
GGTTCGTTTCCATGTTCAAGCGCTCTCCAAATCCACGGTCTTCCAGCAGTTCCATAAAGCCATCGGAGGATGGGGTGAATAAATGGGGTCGGAAAGCAGTCTCTTTTGTA
CTTATTACTGTTACTGGTGGTGTAGCTTTGAGTGCTTTAGATGACCTTGCCATTTATCATAGCTGTAGCAGCAAAGCCATAGAGAAAGCCAGAAACAATCAAGCAGTTAT
AGATGCTATTGGAGAACCCATTGCTAAAGGTCCATGGTACAATGCATCACTTGCAGTAGCTCATAAGAGACATTCTCTATCCTGCACGTTTCCAGTATCAGGACCACAAG
GCACAGGGATCCTCCAACTGAAGGCAGTTCGTAATGGAGAGGATTCCTGGATTTCTTTTCTCCGGCCTCGAGACTGGGACATTCTGATCATGGATGCTCTCCTTCATGTT
CCTGCAAACGAAGGTAAGCAGAAAACATTGCGTATTAACCTCACTGAGAAGTTTGCCCCCGCTGCTTGTGTCTCATGCACTGACTGTCAGCCTCCAGAGACAGAGAAGAG
ATGAAGTCAGCTTGTAAGGTTATTGAGAAACTATTGTCAAAAGTTAGCAGTTTCTATCAGGTTTCTGTCCCGACATGATTTTGAGCTAACCGAAGGATCAAAGTATTCGT
TATCCACACCAAAATAATATTTTCTTTGAGGTTGAGTTCAAACTATGGTGGAATCAGTTTAGAAGATTTATTATTATACAACTTTGCTGACATCAAATGTGGCAAAGTTA
TATGGTTCTCCTGTAAAACCCAAGTTATAAAAGAAATAATAGTAGTTATTCACTTGATTTTTGTTCTTATTTGTTTGTTTGGGTAGGGGGTGGGGGTCGTGTTCTACAGA
TGTTGCCATTGACTTTGATCTACTTTGATTTGTATCACAACCATCATGAGTTGGTGGTCAAAAAGGATCATGGCTTTAATAAAGAACCTAGATGGAATGAGTTTAATCCA
TGGTGGTTAACTACTTAGGAGTTACACCCAAATGTTGTAAGGTCAATCAAGTTGTCTCATGATTAGTTGAGGTACATATAAGATGCCTCGGACGCTCATAGATATAAAAG
AACATAAAAAATTTTGATTCGT

Protein sequence

Show/hide protein sequence

MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNKWGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAHKRHSLSCTFPV
SGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR

Lsi09G018000 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome