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Lsi09G018120 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G018120
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionCoiled-coil domain-containing protein 92
Genome locationchr09:26924734..26930012
RNA-Seq ExpressionLsi09G018120
SyntenyLsi09G018120
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER25179.1 coiled-coil domain-containing protein 92 [Striga asiatica]7.1e-1547.96Show/hide
Query:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCHTQLKGFKVKTEILAKTVEDLSK
        L+    S+ ++E H++LY+EAVV V D  V V NAS    P +L  +++D EAV VVS +  V H++EK H+N CH+QLKG KV+ EIL++T+E L K
Subjt:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCHTQLKGFKVKTEILAKTVEDLSK

GER46715.1 pentatricopeptide repeat-containing protein [Striga asiatica]3.4e-0944.16Show/hide
Query:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCHT
        L+L    +R++E H+ LY+E++VA++D  V VP  S  A PY+LS +  + +AV VV+ + F+ HESEK HIN  H+
Subjt:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCHT

KAF4393400.1 hypothetical protein F8388_023204 [Cannabis sativa]5.7e-1242.71Show/hide
Query:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCHTQLKGFKVKTEILAKTVEDL
        LQLFP S R+ E H+SL NE +  V++F V VPNAS   LPY L  +ST  + V +   +  + H+ ++ +++   T+L+ FK++T+ILAKT E+L
Subjt:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCHTQLKGFKVKTEILAKTVEDL

KAF4396659.1 hypothetical protein G4B88_028973 [Cannabis sativa]5.7e-1242.71Show/hide
Query:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCHTQLKGFKVKTEILAKTVEDL
        LQLFP S R+ E H+SL NE +  V++F V VPNAS   LPY L  +ST  + V +   +  + H+ ++ +++   T+L+ FK++T+ILAKT E+L
Subjt:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCHTQLKGFKVKTEILAKTVEDL

RRT54714.1 hypothetical protein B296_00031614 [Ensete ventricosum]1.1e-0744.74Show/hide
Query:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCH
        LQ FP ++ +EE HV LY+E V+ V DF V V +A R A PYQL ++  DL++V  V     V HE++K H++  H
Subjt:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCH

TrEMBL top hitse value%identityAlignment
A0A426YSL6 Uncharacterized protein5.3e-0844.74Show/hide
Query:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCH
        LQ FP ++ +EE HV LY+E V+ V DF V V +A R A PYQL ++  DL++V  V     V HE++K H++  H
Subjt:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCH

A0A5A7NXG4 Coiled-coil domain-containing protein 923.5e-1547.96Show/hide
Query:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCHTQLKGFKVKTEILAKTVEDLSK
        L+    S+ ++E H++LY+EAVV V D  V V NAS    P +L  +++D EAV VVS +  V H++EK H+N CH+QLKG KV+ EIL++T+E L K
Subjt:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCHTQLKGFKVKTEILAKTVEDLSK

A0A5A7QN03 Pentatricopeptide repeat-containing protein1.7e-0944.16Show/hide
Query:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCHT
        L+L    +R++E H+ LY+E++VA++D  V VP  S  A PY+LS +  + +AV VV+ + F+ HESEK HIN  H+
Subjt:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCHT

A0A7J6HG47 Uncharacterized protein2.7e-1242.71Show/hide
Query:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCHTQLKGFKVKTEILAKTVEDL
        LQLFP S R+ E H+SL NE +  V++F V VPNAS   LPY L  +ST  + V +   +  + H+ ++ +++   T+L+ FK++T+ILAKT E+L
Subjt:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCHTQLKGFKVKTEILAKTVEDL

A0A7J6HPJ6 Uncharacterized protein2.7e-1242.71Show/hide
Query:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCHTQLKGFKVKTEILAKTVEDL
        LQLFP S R+ E H+SL NE +  V++F V VPNAS   LPY L  +ST  + V +   +  + H+ ++ +++   T+L+ FK++T+ILAKT E+L
Subjt:  LQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCHTQLKGFKVKTEILAKTVEDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCTTCAGCTCTTTCCTTTCTCCTCCCGAAAAGAAGAGTGCCATGTTTCGCTGTATAATGAGGCCGTCGTGGCTGTCTCTGACTTTCTTGTGATTGTCCCGAATGC
TTCGAGGGTTGCCCTCCCATATCAGCTTTCTGCCATTTCCACCGACCTCGAGGCTGTAACTGTAGTTTCGGGCATCTGTTTCGTCCCCCATGAATCGGAGAAATGCCATA
TAAACTGGTGCCATACCCAGTTGAAAGGCTTCAAAGTGAAGACAGAAATACTGGCCAAAACAGTGGAAGACCTGAGCAAAGGTGAAATAAGAAATGCATGTCAACCTTGT
GATCGTCCCGAAGATGAGAAACAAGGAAAGGAATATCCCCGTCAACTGGGCAGTCTGATCCAGCATATGGGCAGACATCTGATATCACCGAGCTCTTGTCTGCACGTCGG
GCAACGATTGTCTACCCTTGTTTTACATGAAGAACAGAGGAATAGCAGGGCTTTAGCTAACAATTTAGACAGATTCCAGACTGACAAAAGAAAGGAAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTCTTCAGCTCTTTCCTTTCTCCTCCCGAAAAGAAGAGTGCCATGTTTCGCTGTATAATGAGGCCGTCGTGGCTGTCTCTGACTTTCTTGTGATTGTCCCGAATGC
TTCGAGGGTTGCCCTCCCATATCAGCTTTCTGCCATTTCCACCGACCTCGAGGCTGTAACTGTAGTTTCGGGCATCTGTTTCGTCCCCCATGAATCGGAGAAATGCCATA
TAAACTGGTGCCATACCCAGTTGAAAGGCTTCAAAGTGAAGACAGAAATACTGGCCAAAACAGTGGAAGACCTGAGCAAAGGTGAAATAAGAAATGCATGTCAACCTTGT
GATCGTCCCGAAGATGAGAAACAAGGAAAGGAATATCCCCGTCAACTGGGCAGTCTGATCCAGCATATGGGCAGACATCTGATATCACCGAGCTCTTGTCTGCACGTCGG
GCAACGATTGTCTACCCTTGTTTTACATGAAGAACAGAGGAATAGCAGGGCTTTAGCTAACAATTTAGACAGATTCCAGACTGACAAAAGAAAGGAAGATTAG
Protein sequenceShow/hide protein sequence
MLLQLFPFSSRKEECHVSLYNEAVVAVSDFLVIVPNASRVALPYQLSAISTDLEAVTVVSGICFVPHESEKCHINWCHTQLKGFKVKTEILAKTVEDLSKGEIRNACQPC
DRPEDEKQGKEYPRQLGSLIQHMGRHLISPSSCLHVGQRLSTLVLHEEQRNSRALANNLDRFQTDKRKED