; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G018280 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G018280
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionselenoprotein F-like
Genome locationchr09:27113586..27117962
RNA-Seq ExpressionLsi09G018280
SyntenyLsi09G018280
Gene Ontology termsGO:0005788 - endoplasmic reticulum lumen (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016491 - oxidoreductase activity (molecular function)
InterPro domainsIPR014912 - Selenoprotein F/M domain
IPR036249 - Thioredoxin-like superfamily
IPR038219 - Selenoprotein F/M, thioredoxin-like domain superfamily
IPR039992 - Selenoprotein F/M


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039920.1 15 kDa selenoprotein [Cucumis melo var. makuwa]2.6e-8387.91Show/hide
Query:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQ-----------ELVTDCLKCCSEDSDDATSKIT
        MQLLPGV NPATAVT+ LAATAIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQ           ELV DCLKCC+EDSDDATSKIT
Subjt:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQ-----------ELVTDCLKCCSEDSDDATSKIT

Query:  YSGAMLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI
        YSGA+LEVCMRKLVFYPEIVGFIEE+KD+FPSVKVQY FNSPPKLILLDDEGQHKESIRIDNWKREH LQFLQEKVKRSSAI
Subjt:  YSGAMLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI

XP_004140597.1 selenoprotein F [Cucumis sativus]1.3e-8290.06Show/hide
Query:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMR
        MQLLPGV N A AVT+ L ATAIIFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELV+DCLKCC+EDSDDATSKITYSGA+LEVCMR
Subjt:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMR

Query:  KLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI
        KLVFYPEIVGFIE++KD+FPSVKVQY FNSPPKLILLDD+GQHKESIRIDNWKREH LQFLQEKVKRSSAI
Subjt:  KLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI

XP_008460012.1 PREDICTED: 15 kDa selenoprotein [Cucumis melo]7.3e-8693.57Show/hide
Query:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMR
        MQLLPGV NPATAVT+TLAA AIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELV DCLKCC+EDSDDATSKITYSGA+LEVCMR
Subjt:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMR

Query:  KLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI
        KLVFYPEIVGFIEE+KD+FPSVKVQY FNSPPKLILLDDEGQHKESIRIDNWKREH LQFLQEKVKRSSAI
Subjt:  KLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI

XP_022954272.1 selenoprotein F-like [Cucurbita moschata]3.8e-8292.44Show/hide
Query:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMR
        MQLL GV+NPAT VT+   ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCC+EDSDDATSKITYSGAMLEVCMR
Subjt:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMR

Query:  KLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVK-RSSAI
        KLVFYPEIVGFIEEEKD+FPSV VQY FNSPPKLILLDDEGQHKESIRIDNWKREHILQFL+EKVK RSSAI
Subjt:  KLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVK-RSSAI

XP_038875398.1 selenoprotein F [Benincasa hispida]6.0e-8895.32Show/hide
Query:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMR
        MQLLPGVRNPATAVT+ +AAT +IFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCC+EDSDDATSKITYSGA+LEVCMR
Subjt:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMR

Query:  KLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI
        KLVFYPEIVGFIEEEKD+FPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI
Subjt:  KLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI

TrEMBL top hitse value%identityAlignment
A0A0A0KA30 Sep15_SelM domain-containing protein6.3e-8390.06Show/hide
Query:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMR
        MQLLPGV N A AVT+ L ATAIIFI+SMPL WSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELV+DCLKCC+EDSDDATSKITYSGA+LEVCMR
Subjt:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMR

Query:  KLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI
        KLVFYPEIVGFIE++KD+FPSVKVQY FNSPPKLILLDD+GQHKESIRIDNWKREH LQFLQEKVKRSSAI
Subjt:  KLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI

A0A1S3CC00 15 kDa selenoprotein3.6e-8693.57Show/hide
Query:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMR
        MQLLPGV NPATAVT+TLAA AIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELV DCLKCC+EDSDDATSKITYSGA+LEVCMR
Subjt:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMR

Query:  KLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI
        KLVFYPEIVGFIEE+KD+FPSVKVQY FNSPPKLILLDDEGQHKESIRIDNWKREH LQFLQEKVKRSSAI
Subjt:  KLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI

A0A5A7T9G4 15 kDa selenoprotein1.3e-8387.91Show/hide
Query:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQ-----------ELVTDCLKCCSEDSDDATSKIT
        MQLLPGV NPATAVT+ LAATAIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQ           ELV DCLKCC+EDSDDATSKIT
Subjt:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQ-----------ELVTDCLKCCSEDSDDATSKIT

Query:  YSGAMLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI
        YSGA+LEVCMRKLVFYPEIVGFIEE+KD+FPSVKVQY FNSPPKLILLDDEGQHKESIRIDNWKREH LQFLQEKVKRSSAI
Subjt:  YSGAMLEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI

A0A6J1GQK6 selenoprotein F-like1.8e-8292.44Show/hide
Query:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMR
        MQLL GV+NPAT VT+   ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCC+EDSDDATSKITYSGAMLEVCMR
Subjt:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMR

Query:  KLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVK-RSSAI
        KLVFYPEIVGFIEEEKD+FPSV VQY FNSPPKLILLDDEGQHKESIRIDNWKREHILQFL+EKVK RSSAI
Subjt:  KLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVK-RSSAI

A0A6J1JXH9 selenoprotein F-like2.0e-8191.86Show/hide
Query:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMR
        MQLL GV+NPAT VT+   ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCC+EDSDDATSKITYSGAMLEVCMR
Subjt:  MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMR

Query:  KLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVK-RSSAI
        KLVFYPEIVGFIEEEK +FPSV VQY FNSPPKLILLDDEGQHKESIRIDNWKREHILQFL+EKVK RSSAI
Subjt:  KLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVK-RSSAI

SwissProt top hitse value%identityAlignment
A1Z623 Selenoprotein F1.1e-1834.97Show/hide
Query:  GVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFY
        G   PA  + + L ATA+  +++        + SS  C +LGF+   LC  C  L ++   Q L  DC  CC E++   T K+ Y+GA+LEVC  KL  +
Subjt:  GVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFY

Query:  PEIVGFIEEEKDK-FPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKR
        P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  + + +FL EK++R
Subjt:  PEIVGFIEEEKDK-FPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKR

A8YXY3 Selenoprotein F1.6e-1937.88Show/hide
Query:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLI
        + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K K F  ++++Y+  S P L 
Subjt:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLI

Query:  LLDDEGQHKESIRIDNWKREHILQFLQEKVKR
        LLDD G   E + I  W  + + +FL EK++R
Subjt:  LLDDEGQHKESIRIDNWKREHILQFLQEKVKR

O60613 Selenoprotein F2.8e-1937.88Show/hide
Query:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLI
        + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K K F  ++++Y+  S P L 
Subjt:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLI

Query:  LLDDEGQHKESIRIDNWKREHILQFLQEKVKR
        LLDD G   E + I  W  + + +FL EK++R
Subjt:  LLDDEGQHKESIRIDNWKREHILQFLQEKVKR

Q802F3 Selenoprotein F4.7e-1937.88Show/hide
Query:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLI
        +LSS  C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GA+LEVC  KL  +P++  F+  +K K F  ++++Y+  S P L 
Subjt:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLI

Query:  LLDDEGQHKESIRIDNWKREHILQFLQEKVKR
        LLDD G   E + I  W  + + +FL EK++R
Subjt:  LLDDEGQHKESIRIDNWKREHILQFLQEKVKR

Q923V8 Selenoprotein F6.8e-1837.12Show/hide
Query:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLI
        + SS  C +LGF+   LCS C  L ++     L   C  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K K F  ++++Y+  S P L 
Subjt:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLI

Query:  LLDDEGQHKESIRIDNWKREHILQFLQEKVKR
        LLDD G   E + I  W  + + +FL EK++R
Subjt:  LLDDEGQHKESIRIDNWKREHILQFLQEKVKR

Arabidopsis top hitse value%identityAlignment
AT1G05720.1 selenoprotein family protein8.1e-6774.05Show/hide
Query:  AVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFI
        A  + L+A  I+ +AS   A  KEQLS++ECEDLGF+GLALCSDCH+L+EY+KDQELV+DCLKCC++DS+D+ SK+TYSGA+LEVCMRKLVFYPEIVGFI
Subjt:  AVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFI

Query:  EEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSA
        EEEK+KFPSVKVQYIFNSPPKLI+LD++G+HKESIRIDNWKREH+LQ+++EKVK ++A
Subjt:  EEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCTTCTCCCCGGGGTAAGGAATCCCGCTACGGCGGTGACGATAACGTTAGCGGCGACGGCGATCATTTTCATCGCGTCAATGCCATTGGCTTGGTCAAAGGAGCA
ACTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGAATTAGTGACGGACTGTT
TGAAGTGTTGCTCGGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGC
TTCATTGAAGAAGAAAAGGATAAATTCCCCTCAGTTAAGGTTCAATATATCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCAT
CAGGATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAA
mRNA sequenceShow/hide mRNA sequence
CGAACATATTTCTAAAAACGGAATATAATTATTATTTAAAATAAAACTAGAAAATTGACGCAATAGGTCAAAATAACGAAAAATGTTATTTCTCCAAATTTGAAGTTAAA
AATTGGTCTTTTCCAGTGAGAGTTTTCTGATCGTCTGTAGACTTTGCGTCTTCACCCTCAGTCGCCGGCGAACACAGAGATGCAGCTTCTCCCCGGGGTAAGGAATCCCG
CTACGGCGGTGACGATAACGTTAGCGGCGACGGCGATCATTTTCATCGCGTCAATGCCATTGGCTTGGTCAAAGGAGCAACTCAGCTCGAGGGAATGTGAGGATCTAGGT
TTCACAGGCCTTGCTCTCTGTTCTGATTGTCACACTTTAGCTGAATATATCAAAGATCAAGAATTAGTGACGGACTGTTTGAAGTGTTGCTCGGAGGATTCTGATGATGC
CACGAGTAAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAATTCCCCT
CAGTTAAGGTTCAATATATCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATCAGGATTGATAATTGGAAACGTGAACATATT
TTGCAGTTCCTGCAAGAGAAGGTTAAGCGATCTTCAGCAATTTAAGGTTCTCACTAGTCGTCCCCCCCCCCCCCCC
Protein sequenceShow/hide protein sequence
MQLLPGVRNPATAVTITLAATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCSEDSDDATSKITYSGAMLEVCMRKLVFYPEIVG
FIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI