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Lsi09G018320 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G018320
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTrigger_N domain-containing protein
Genome locationchr09:27133843..27142920
RNA-Seq ExpressionLsi09G018320
SyntenyLsi09G018320
Gene Ontology termsGO:0000413 - protein peptidyl-prolyl isomerization (biological process)
GO:0015031 - protein transport (biological process)
GO:0043335 - protein unfolding (biological process)
GO:0051083 - 'de novo' cotranslational protein folding (biological process)
GO:0061077 - chaperone-mediated protein folding (biological process)
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
GO:0044183 - protein folding chaperone (molecular function)
InterPro domainsIPR005215 - Trigger factor
IPR036611 - Trigger factor ribosome-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039922.1 uncharacterized protein E6C27_scaffold122G002020 [Cucumis melo var. makuwa]3.6e-3791.95Show/hide
Query:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGSTMIFLSFHLECYNHSFI
        G EAA+TDYKGNAITLKNAKVVVESEEEN+IQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFR+QKGGSTMIF+ FHLECYNH FI
Subjt:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGSTMIFLSFHLECYNHSFI

XP_008460020.1 PREDICTED: uncharacterized protein LOC103498959 [Cucumis melo]8.9e-2892.96Show/hide
Query:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST
        G EAA+TDYKGNAITLKNAKVVVESEEEN+IQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFR+QKGG T
Subjt:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST

XP_011656737.1 uncharacterized protein LOC101212225 [Cucumis sativus]2.0e-2792.96Show/hide
Query:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST
        G EAAITDYKGN ITLKNAKVVVESEEEN+IQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFR+QKGG T
Subjt:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST

XP_022155406.1 uncharacterized protein LOC111022553 [Momordica charantia]1.1e-2587.32Show/hide
Query:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST
        G EAAITDYKGNAI LKNAK+VVESE+EN IQLRVDL+GDETQK+FDQVLTNLARSAPPMPGFR QKGG T
Subjt:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST

XP_038906537.1 uncharacterized protein LOC120092511 [Benincasa hispida]2.4e-2895.77Show/hide
Query:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST
        G EAAITDYKGNAITLKNAKVVVESEEEN+IQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGG T
Subjt:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST

TrEMBL top hitse value%identityAlignment
A0A0A0K988 Trigger_N domain-containing protein9.6e-2892.96Show/hide
Query:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST
        G EAAITDYKGN ITLKNAKVVVESEEEN+IQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFR+QKGG T
Subjt:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST

A0A1S3CBN2 uncharacterized protein LOC1034989594.3e-2892.96Show/hide
Query:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST
        G EAA+TDYKGNAITLKNAKVVVESEEEN+IQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFR+QKGG T
Subjt:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST

A0A5A7T921 Trigger_N domain-containing protein1.8e-3791.95Show/hide
Query:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGSTMIFLSFHLECYNHSFI
        G EAA+TDYKGNAITLKNAKVVVESEEEN+IQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFR+QKGGSTMIF+ FHLECYNH FI
Subjt:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGSTMIFLSFHLECYNHSFI

A0A6J1DRL2 uncharacterized protein LOC1110225535.3e-2687.32Show/hide
Query:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST
        G EAAITDYKGNAI LKNAK+VVESE+EN IQLRVDL+GDETQK+FDQVLTNLARSAPPMPGFR QKGG T
Subjt:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST

A0A6J1KVH6 uncharacterized protein LOC1114975773.4e-2588.73Show/hide
Query:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST
        G EAAITDYKG AITLKNAK+VVESE+EN+IQLRV+LTGDETQKVFDQVLTNLARSAPPMPGFR+QKGG T
Subjt:  GFEAAITDYKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G30695.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 253 Blast hits to 253 proteins in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).3.2e-0744.9Show/hide
Query:  VESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST
        VE+E  N++++ V ++G++TQ VF+ V   +  +A P+PGFRR KGG T
Subjt:  VESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST

AT2G30695.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).3.2e-0744.9Show/hide
Query:  VESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST
        VE+E  N++++ V ++G++TQ VF+ V   +  +A P+PGFRR KGG T
Subjt:  VESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGST


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTTATTGTTCATTTTTTTAGCTGTTGGAAACAACAACTACAAACAATCAATCAGTTTCATCATGTGCCGCTGTTTGTTTTTGAGGATTCCATATTTCATTTAGA
TGAAAGACAGGATGTGAAGCATCCAATTGAGAAAAATGGAGCCGATCATGAGCATTTATACTTGCATGCAGGTGAGGTTTGGAGTAAAGTTGGAAATATGTACAACGAGA
AGAAAACATTATTATCTTCTATACCATGTATTAGAAAATTGTGTCCAATTGATGTTGTTTTGTTGGTCTTCTGTTTTGATGTCATAGGTTTTGAGGCAGCCATCACAGAT
TACAAAGGCAATGCAATAACGTTGAAAAATGCTAAAGTAGTTGTAGAATCTGAAGAGGAAAACCAGATACAACTAAGAGTGGACTTGACTGGGGATGAGACACAAAAGGT
ATTTGATCAGGTTTTGACAAACTTAGCCCGCTCAGCACCGCCGATGCCAGGATTTCGTAGGCAAAAAGGAGGTAGTACCATGATTTTCCTCTCCTTCCACCTTGAATGTT
ACAACCATTCATTCATCTGCAACAGTAGTCTTTTACATGTTCATTATCCATATAGACAAACATGGGAATTGAGAAGTGCCTTTCCTGTCCTTATGCATTCATATATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTTATTGTTCATTTTTTTAGCTGTTGGAAACAACAACTACAAACAATCAATCAGTTTCATCATGTGCCGCTGTTTGTTTTTGAGGATTCCATATTTCATTTAGA
TGAAAGACAGGATGTGAAGCATCCAATTGAGAAAAATGGAGCCGATCATGAGCATTTATACTTGCATGCAGGTGAGGTTTGGAGTAAAGTTGGAAATATGTACAACGAGA
AGAAAACATTATTATCTTCTATACCATGTATTAGAAAATTGTGTCCAATTGATGTTGTTTTGTTGGTCTTCTGTTTTGATGTCATAGGTTTTGAGGCAGCCATCACAGAT
TACAAAGGCAATGCAATAACGTTGAAAAATGCTAAAGTAGTTGTAGAATCTGAAGAGGAAAACCAGATACAACTAAGAGTGGACTTGACTGGGGATGAGACACAAAAGGT
ATTTGATCAGGTTTTGACAAACTTAGCCCGCTCAGCACCGCCGATGCCAGGATTTCGTAGGCAAAAAGGAGGTAGTACCATGATTTTCCTCTCCTTCCACCTTGAATGTT
ACAACCATTCATTCATCTGCAACAGTAGTCTTTTACATGTTCATTATCCATATAGACAAACATGGGAATTGAGAAGTGCCTTTCCTGTCCTTATGCATTCATATATGTAG
Protein sequenceShow/hide protein sequence
MCVIVHFFSCWKQQLQTINQFHHVPLFVFEDSIFHLDERQDVKHPIEKNGADHEHLYLHAGEVWSKVGNMYNEKKTLLSSIPCIRKLCPIDVVLLVFCFDVIGFEAAITD
YKGNAITLKNAKVVVESEEENQIQLRVDLTGDETQKVFDQVLTNLARSAPPMPGFRRQKGGSTMIFLSFHLECYNHSFICNSSLLHVHYPYRQTWELRSAFPVLMHSYM