; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G018430 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G018430
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description60S ribosomal protein L38
Genome locationchr09:27271286..27276387
RNA-Seq ExpressionLsi09G018430
SyntenyLsi09G018430
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646721.1 hypothetical protein Csa_005163 [Cucumis sativus]1.7e-5466.67Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVE
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP                                    V 
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVE

Query:  ILNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
        +L  + + +           S+   ++ PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
Subjt:  ILNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP

KAF3497693.1 hypothetical protein DY000_02056630 [Brassica cretica]5.3e-5366.14Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVEI
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPP VA T      AR                   V  L+ +
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVEI

Query:  LNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        L                          PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG
Subjt:  LNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KAG6512538.1 hypothetical protein ZIOFF_030659 [Zingiber officinale]3.0e-5666.34Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITV---------ARFECARSVKEWLKS---QMITR
        MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPP     V           FEC R++K  L++    +   
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITV---------ARFECARSVKEWLKS---QMITR

Query:  MRTRFFVCGLVEILNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP
         R   F   LV  +     FI     E +           PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLP
Subjt:  MRTRFFVCGLVEILNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLP

Query:  PG
        PG
Subjt:  PG

KAG6515258.1 hypothetical protein ZIOFF_025650 [Zingiber officinale]8.0e-5767.5Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITV---------ARFECARSVKEWLKSQMITRMRT
        MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPP     V           FEC R++K          M+ 
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITV---------ARFECARSVKEWLKSQMITRMRT

Query:  RFFVCGLVEILNC-YGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        R  V  L   L+  YG     R+  +  +  V + +  PKQIHEIKDFLLTARRKDARSVKIKR KDVVKFKVRCSKYLYTLCVFDSEKA+KLKQSLPPG
Subjt:  RFFVCGLVEILNC-YGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KVH95117.1 Ribosomal protein L38e, partial [Cynara cardunculus var. scolymus]1.0e-5166.14Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVEI
        PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPP                                VC L  I
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVEI

Query:  LNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
              F     Q              PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPG
Subjt:  LNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

TrEMBL top hitse value%identityAlignment
A0A0D9X019 Uncharacterized protein8.6e-4958.95Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVE
        MPKQIHEIKDFLLTARRKDARSV+IKR+KD VKFKVRCSKYLYTLCVFD++KA+KLKQSLPP + +                                  
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVE

Query:  ILNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
                                  + PKQIHEIKDFLLTARRKDARSV+IKR+KD VKFKVRCSKYLYTLCVFD++KA+KLKQSLPPG
Subjt:  ILNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

A0A103XQP8 Ribosomal protein L38e (Fragment)4.9e-5266.14Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVEI
        PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPP                                VC L  I
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVEI

Query:  LNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
              F     Q              PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKA+KLKQSLPPG
Subjt:  LNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

A0A498I9U8 Uncharacterized protein1.2e-3757.23Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVE
        +PKQIHEIKDFLLTARRKDARSVKIK++KD VKFKV CSKYLYTLCVFDS+KADKLKQSLPP  A T            W  +Q+ ++  T+  V   + 
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVE

Query:  ILNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS
        +        + R   ++ V  + +    PKQ HE+KDFLLTARRKDA SVK KR  DVVKFKVRC+
Subjt:  ILNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS

A0A4S4DHN9 Uncharacterized protein4.1e-4359.14Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVEI
        PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCS+YLYTLCVFDSEKADKLKQSLPP      A+  CA +   + +S++  + R           
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVEI

Query:  LNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL
             +   +R+ E+    S       PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRC+++         E+A  +KQ+L
Subjt:  LNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSL

A0A6A2WU09 60S ribosomal protein L387.5e-4552.38Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARF---------ECARSVKE--WLKSQMITRMR
        PKQIHEIKDFLLTARRKDAR VKIK+S+DVVKFKVRCSKYLYTLC+ D++KADKLKQSLPP   + + R           C R  K+   +K  ++T  R
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARF---------ECARSVKE--WLKSQMITRMR

Query:  TRFFVCGLVEILNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARR-------------------------------KDARSVKIKRSKDVV
                        +    +I+++  V   K     PKQIHEIKDFLLTARR                               KDARSVKIK+S+DVV
Subjt:  TRFFVCGLVEILNCYGEFIMARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARR-------------------------------KDARSVKIKRSKDVV

Query:  KFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        KFKVRCSKYLYTL V D EKADKLKQSLPPG
Subjt:  KFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L383.1e-2789.39Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAI
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPP +++
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAI

P46291 60S ribosomal protein L383.7e-2584.85Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAI
        MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPP +++
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAI

P63173 60S ribosomal protein L381.9e-2175.76Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAI
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPP +A+
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAI

Q32PB9 60S ribosomal protein L381.9e-2175.76Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAI
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPP +A+
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAI

Q95V84 60S ribosomal protein L381.2e-2381.82Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAI
        MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPP +A+
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAI

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family2.2e-2889.39Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAI
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPP +++
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAI

AT3G59540.1 Ribosomal L38e protein family2.2e-2889.39Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAI
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPP +++
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCG
ATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGAAGTGGCAATAACTGTAGCTAGGTTTGAGTGTG
CAAGATCTGTGAAAGAATGGTTAAAGTCTCAAATGATCACAAGAATGAGAACTAGATTTTTTGTATGTGGATTGGTTGAAATTTTGAATTGTTATGGTGAGTTTATCATG
GCAAGGATACAAGAGAATGTAGGAGTCACTAGTGTTAAATATGGGTCTAGAGCGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGC
TCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGA
AGCAATCTCTTCCACCAGGTTAG
mRNA sequenceShow/hide mRNA sequence
AGGTAGATGGACCTTCTTGGATTGGGCTTATTTCAATTGACGGCCCGTTGGGTTTTGGACCGAGAAACTCAGCAACCCTCCGCATAAATAAGAAGTTCTAAACCTAGGGT
TGTGTCTTCACGCTCGGCCGCCTCAGTTCTCCCACCAAAATGCCGAAACAAATTCATGAGATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAA
AATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATACTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTC
CACCAGAAGTGGCAATAACTGTAGCTAGGTTTGAGTGTGCAAGATCTGTGAAAGAATGGTTAAAGTCTCAAATGATCACAAGAATGAGAACTAGATTTTTTGTATGTGGA
TTGGTTGAAATTTTGAATTGTTATGGTGAGTTTATCATGGCAAGGATACAAGAGAATGTAGGAGTCACTAGTGTTAAATATGGGTCTAGAGCGCCGAAACAAATTCATGA
GATCAAAGATTTCCTTCTCACTGCTAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTCCGATGCTCCAAATATCTTTATA
CTCTTTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG
Protein sequenceShow/hide protein sequence
MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEVAITVARFECARSVKEWLKSQMITRMRTRFFVCGLVEILNCYGEFIM
ARIQENVGVTSVKYGSRAPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG