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Lsi09G018810 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G018810
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTubulin-specific chaperone A
Genome locationchr09:27612854..27615919
RNA-Seq ExpressionLsi09G018810
SyntenyLsi09G018810
Gene Ontology termsGO:0007021 - tubulin complex assembly (biological process)
GO:0007023 - post-chaperonin tubulin folding pathway (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0048487 - beta-tubulin binding (molecular function)
InterPro domainsIPR004226 - Tubulin binding cofactor A
IPR036126 - Tubulin binding cofactor A superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155762.1 tubulin-folding cofactor A [Momordica charantia]3.6e-4992.92Show/hide
Query:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST
        MATV+NLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMM+PDCHKRLE++LADLKGALAELEESTQEKGPEFD+ARST
Subjt:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST

Query:  ITEIESFLKTTEE
        I+E+E+FLKTTEE
Subjt:  ITEIESFLKTTEE

XP_022959143.1 tubulin-folding cofactor A [Cucurbita moschata]6.8e-4893.81Show/hide
Query:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST
        MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLE+ALADLKG L ELE+STQ KGPEF+DARS 
Subjt:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST

Query:  ITEIESFLKTTEE
        ITEIESFLKTTEE
Subjt:  ITEIESFLKTTEE

XP_023006149.1 tubulin-folding cofactor A [Cucurbita maxima]1.1e-4895.58Show/hide
Query:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST
        MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKG L ELE+STQ KGPEFDDARS 
Subjt:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST

Query:  ITEIESFLKTTEE
        ITEIESFLKTTEE
Subjt:  ITEIESFLKTTEE

XP_023548059.1 tubulin-folding cofactor A [Cucurbita pepo subsp. pepo]2.4e-4894.69Show/hide
Query:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST
        MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKG L ELE+STQ +GPEFDDARS 
Subjt:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST

Query:  ITEIESFLKTTEE
        ITEIESFLKTTEE
Subjt:  ITEIESFLKTTEE

XP_038907024.1 tubulin-folding cofactor A [Benincasa hispida]6.2e-4995.58Show/hide
Query:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST
        MATVKNLKIKTATCKRIIKELHSYEKEVE EAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESAL DLKGALAELE+STQEKGPEF+DARST
Subjt:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST

Query:  ITEIESFLKTTEE
        ITEIESFL+TTEE
Subjt:  ITEIESFLKTTEE

TrEMBL top hitse value%identityAlignment
A0A5A7T9L5 Tubulin-specific chaperone A1.8e-4691.15Show/hide
Query:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST
        MATVKNLKIKTATCKRI+KEL SYEKEVEREA+KTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLE ALADLK ALAELE+ST+EKGPEFDDARST
Subjt:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST

Query:  ITEIESFLKTTEE
        I +IESFLK TEE
Subjt:  ITEIESFLKTTEE

A0A5D3DLX2 Tubulin-specific chaperone A1.8e-4691.15Show/hide
Query:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST
        MATVKNLKIKTATCKRI+KEL SYEKEVEREA+KTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLE ALADLK ALAELE+ST+EKGPEFDDARST
Subjt:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST

Query:  ITEIESFLKTTEE
        I +IESFLK TEE
Subjt:  ITEIESFLKTTEE

A0A6J1DQ83 Tubulin-specific chaperone A1.8e-4992.92Show/hide
Query:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST
        MATV+NLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMM+PDCHKRLE++LADLKGALAELEESTQEKGPEFD+ARST
Subjt:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST

Query:  ITEIESFLKTTEE
        I+E+E+FLKTTEE
Subjt:  ITEIESFLKTTEE

A0A6J1H416 Tubulin-specific chaperone A3.3e-4893.81Show/hide
Query:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST
        MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLE+ALADLKG L ELE+STQ KGPEF+DARS 
Subjt:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST

Query:  ITEIESFLKTTEE
        ITEIESFLKTTEE
Subjt:  ITEIESFLKTTEE

A0A6J1KV46 Tubulin-specific chaperone A5.1e-4995.58Show/hide
Query:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST
        MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKG L ELE+STQ KGPEFDDARS 
Subjt:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST

Query:  ITEIESFLKTTEE
        ITEIESFLKTTEE
Subjt:  ITEIESFLKTTEE

SwissProt top hitse value%identityAlignment
O04350 Tubulin-folding cofactor A4.5e-4275Show/hide
Query:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST
        MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRMM+PDCHKRLESALADLK  LAELEE+ +++GPE +DA+ T
Subjt:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST

Query:  ITEIESFLKTTE
        + ++E    T +
Subjt:  ITEIESFLKTTE

O75347 Tubulin-specific chaperone A7.4e-1339.22Show/hide
Query:  VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARSTITE
        V+ +KIKT   KR++KE   YEKE +++  K   M+ +  + YD+K+Q  +L ESRMM+PDC +RLE+A  DL+  L    E   E+  E+ +AR  +  
Subjt:  VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARSTITE

Query:  IE
        ++
Subjt:  IE

P48428 Tubulin-specific chaperone A4.8e-1238.24Show/hide
Query:  VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARSTITE
        V+ +KIKT   +R++KE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMM+PDC +RLE+A  DL+  L    E   E+  E+ +AR  +  
Subjt:  VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARSTITE

Query:  IE
        ++
Subjt:  IE

P80585 Tubulin-specific chaperone A1.3e-1241.18Show/hide
Query:  VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARSTITE
        ++ +KIKT   KR+ KE   YEKE +++  K   MK +  D Y +K+Q  +L ESRMM+PDC +RLE A ADL   L    E   E+  E+ +ARS +  
Subjt:  VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARSTITE

Query:  IE
        ++
Subjt:  IE

Q6PEC1 Tubulin-specific chaperone A1.7e-1239.22Show/hide
Query:  VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARSTITE
        V+ +KIKT   KR++KE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMM+PDC +RLE+A  DL+  L    E   E+  E+ +AR  +  
Subjt:  VKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARSTITE

Query:  IE
        ++
Subjt:  IE

Arabidopsis top hitse value%identityAlignment
AT2G30410.1 tubulin folding cofactor A (KIESEL)3.2e-4375Show/hide
Query:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST
        MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRMM+PDCHKRLESALADLK  LAELEE+ +++GPE +DA+ T
Subjt:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST

Query:  ITEIESFLKTTE
        + ++E    T +
Subjt:  ITEIESFLKTTE

AT2G30410.2 tubulin folding cofactor A (KIESEL)3.2e-4375Show/hide
Query:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST
        MAT++NLKIKT+TCKRI+KELHSYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRMM+PDCHKRLESALADLK  LAELEE+ +++GPE +DA+ T
Subjt:  MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARST

Query:  ITEIESFLKTTE
        + ++E    T +
Subjt:  ITEIESFLKTTE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTGTAAAGAACCTGAAGATTAAGACAGCAACGTGCAAACGCATTATCAAGGAGTTGCATTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCCAAAACAGCTGA
CATGAAAGAAAAAGGGGCTGACCCTTATGACCTTAAACAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCTGATTGTCACAAGCGTCTGGAGTCTGCCTTAG
CTGATCTGAAAGGAGCACTGGCTGAACTGGAAGAATCAACCCAAGAGAAAGGCCCGGAGTTCGACGACGCTCGGAGTACAATCACCGAGATCGAAAGTTTCCTAAAGACA
ACAGAGGAATAG
mRNA sequenceShow/hide mRNA sequence
CCCAAAAAAAAAAAAAAATCATTTTGCCTTAGAAAAGTTGGGTCATGCTTGGTCTCTTCTCTGCTACTACGAATCTGCATTCATTGGGTACAAAACTCCATTGATACAAT
AGAAAAAAGATAGCAAGTTCCACAGAAGAAGAGATCAGAGTTTTTTTCGTAGAATTTTGATTTGAAATTTCGTCGACGCTCGAGTTCTTCCGGAGCAGGTCAGTATGGCC
ACTGTAAAGAACCTGAAGATTAAGACAGCAACGTGCAAACGCATTATCAAGGAGTTGCATTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCCAAAACAGCTGACATGAA
AGAAAAAGGGGCTGACCCTTATGACCTTAAACAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCTGATTGTCACAAGCGTCTGGAGTCTGCCTTAGCTGATC
TGAAAGGAGCACTGGCTGAACTGGAAGAATCAACCCAAGAGAAAGGCCCGGAGTTCGACGACGCTCGGAGTACAATCACCGAGATCGAAAGTTTCCTAAAGACAACAGAG
GAATAGTAGTGAGTTTGACAATGATCTTAATTGATGCCTGATTGCTTTTAGAAGTTATTAATCAAACTATTGCTTTGCAATATTAGTTCTCAATGTTTGGCTTTTGGATG
CTATGTTTATAGTTTGGAGAGAGTTTCATCTTCTGTTATTCACTACTATCATCAAGTGTAAGACTAAACTCTTCTGCTGGGTGTTGTATTTTAGAATATTTTGATGGGAT
TTCCCCAATTTAAAGGAATGCATTTCCAAGTATATACAACAGCAACCAAGCACATTTGCTCGTTGAGTGAATGCTACGTAAGCATTAAAGATGATTCATAAGAGGGTTTG
GTAAATAAAATAAAAGTAATATTAATGATTAA
Protein sequenceShow/hide protein sequence
MATVKNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLESALADLKGALAELEESTQEKGPEFDDARSTITEIESFLKT
TEE