CuGenDBv2

Gene ID	Lsi09G019070
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Phosphorylated adapter RNA export protein
Genome location	chr09:27917456..27918743
RNA-Seq Expression	Lsi09G019070
Synteny	Lsi09G019070
Gene Ontology terms	GO:0006408 - snRNA export from nucleus (biological process) GO:0015031 - protein transport (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR019385 - Phosphorylated adapter RNA export protein, RNA-binding domain IPR038092 - Phosphorylated adapter RNA export protein, RNA-binding domain superfamily IPR039047 - Phosphorylated adapter RNA export protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040009.1 uncharacterized protein E6C27_scaffold122G002920 [Cucumis melo var. makuwa]

3.1e-56

87.5

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Query:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSV-GSSGDQPDRIQSFTPSQNQSK
        +VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFS  GSS + PD +QSFT   N+SK
Subjt:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSV-GSSGDQPDRIQSFTPSQNQSK

Query:  ESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        ESNSEEKRSSIH+RLRVP+SYDDD+L+ENPKEE+TT
Subjt:  ESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

XP_004144996.1 uncharacterized protein LOC101205280 isoform X1 [Cucumis sativus]

8.0e-57

87.41

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Query:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQSKE
        +VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREATETEKESSQKVPHLFS GSS + PD +QSF+   NQSKE
Subjt:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQSKE

Query:  SNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        SNSEEK SSIH+RLRVPVSYDDD+L+ENPKEE+TT
Subjt:  SNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

XP_023547831.1 uncharacterized protein LOC111806680 [Cucurbita pepo subsp. pepo]

6.2e-57

88.89

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Query:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQSKE
        +VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATE  K SSQ+V HLFS G+S DQPD IQS TP QNQSKE
Subjt:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQSKE

Query:  SNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        SNSEEKRSS+H RLRVPVSYDDDILRENPKEE+TT
Subjt:  SNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

XP_031744074.1 uncharacterized protein LOC101205280 isoform X2 [Cucumis sativus]

8.0e-57

87.41

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Query:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQSKE
        +VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREATETEKESSQKVPHLFS GSS + PD +QSF+   NQSKE
Subjt:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQSKE

Query:  SNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        SNSEEK SSIH+RLRVPVSYDDD+L+ENPKEE+TT
Subjt:  SNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

XP_038906568.1 uncharacterized protein LOC120092530 [Benincasa hispida]

2.5e-58

88.89

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Query:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQSKE
        +VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQP+IRREATETEKE+SQ+VPHLFS GSSGDQ D  Q  TP QN+SKE
Subjt:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQSKE

Query:  SNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        SN+EEKRSSIHNRLRVPVSYDDD+LRENPKEE+TT
Subjt:  SNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBJ7 Phosphorylated adapter RNA export protein

3.9e-57

87.41

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Query:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQSKE
        +VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREATETEKESSQKVPHLFS GSS + PD +QSF+   NQSKE
Subjt:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQSKE

Query:  SNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        SNSEEK SSIH+RLRVPVSYDDD+L+ENPKEE+TT
Subjt:  SNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

A0A1S3CD38 Phosphorylated adapter RNA export protein

7.3e-56

86.76

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Query:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSV-GSSGDQPDRIQSFTPSQNQSK
        +VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREA ETEKESSQKVPHLFS  GSS + PD +QSFT   N+SK
Subjt:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSV-GSSGDQPDRIQSFTPSQNQSK

Query:  ESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        ESNSEEKRSSIH+RLRVP+SYDDD+L+ENPKEE+TT
Subjt:  ESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

A0A5D3DLH5 Phosphorylated adapter RNA export protein

1.5e-56

87.5

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Query:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSV-GSSGDQPDRIQSFTPSQNQSK
        +VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFS  GSS + PD +QSFT   N+SK
Subjt:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSV-GSSGDQPDRIQSFTPSQNQSK

Query:  ESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        ESNSEEKRSSIH+RLRVP+SYDDD+L+ENPKEE+TT
Subjt:  ESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

A0A6J1H592 Phosphorylated adapter RNA export protein

1.5e-56

88.15

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Query:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQSKE
        +VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATE  K SSQ V HLFS G+S DQPD IQS TP QNQSKE
Subjt:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQSKE

Query:  SNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        SNSEEKRSS+H RLRVPVSYDDDILRENPKEE+T+
Subjt:  SNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

A0A6J1KUZ4 Phosphorylated adapter RNA export protein

9.6e-56

88.15

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Query:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQSKE
        +VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATE  K SSQ+V HLFS G+S DQPD IQS TP QNQSKE
Subjt:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQSKE

Query:  SNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        SNSEEKRSS+  RLRVPVSYDDDILRENPKEE+TT
Subjt:  SNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G20430.1 CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

1.6e-23

46.21

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Query:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQSKE
        +V A++ CGGQ+TADG R RT GG+LW+IIK R+P AY+EIMK+ KEFEKQF+QPN R ++     + S     L S   S D+    +       +  E
Subjt:  QVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQSKE

Query:  SNSEEKRSSIHNRLRVPVSYDDDILRENPKEE
        S  E++R S+H R+RVPVSY DD+ R+ P ++
Subjt:  SNSEEKRSSIHNRLRVPVSYDDDILRENPKEE

Sequences

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CDS sequence

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mRNA sequence

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ATGATCTTATGTGCACAAATTGACATGTCGGAATGCCAGGTCAATGCAGTTCAGGCTTGTGGAGGTCAAATGACTGCAGATGGCAGGCGCTTTCGGACAGGAGGTGGCAT
ATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTATAAAGAGATTATGAAACGAGCAAAAGAGTTTGAGAAACAATTTAAGCAACCAAATATCAGAAGGGAGGCTA
CAGAAACTGAGAAAGAAAGTTCTCAAAAAGTTCCGCACCTGTTCTCTGTAGGATCTTCAGGAGATCAACCAGACCGCATCCAAAGCTTTACCCCATCGCAGAATCAATCT
AAAGAATCAAATTCCGAAGAAAAACGATCTTCTATTCACAATAGATTAAGAGTCCCAGTTTCATATGATGATGACATCCTTCGAGAGAATCCGAAAGAGGAAGAAACAAC
TTGATTGTAGTTAGATCTTCCCATTTTTTTTGAACAATTACTGTTGGTTTTTAGTTTGTTTAACAAAATCAACAGTTTTTACCTCCAAAAAATGAGGCAGAAAAATGTTC
TATAAGCTGAGTTTGTTCCATTCATTTTCAGTGCTTTTATGTTTTAGGGTACTTTGGTTGAGCGTTCTGCTTCTTCAGGTGAGGATGGAATTAACCATATGGAAAGAAAT
TGGATTTTATTGGTTGTAAATGGAAAAAGATTTTGCAATTGTTTCTC

Protein sequence

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MILCAQIDMSECQVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQS
KESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

Lsi09G019070 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome