CuGenDBv2

Gene ID	Lsi09G019080
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Phosphorylated adapter RNA export protein
Genome location	chr09:27919281..27921841
RNA-Seq Expression	Lsi09G019080
Synteny	Lsi09G019080
Gene Ontology terms	GO:0006408 - snRNA export from nucleus (biological process) GO:0015031 - protein transport (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR038092 - Phosphorylated adapter RNA export protein, RNA-binding domain superfamily IPR039047 - Phosphorylated adapter RNA export protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6574787.1 hypothetical protein SDJN03_25426, partial [Cucurbita argyrosperma subsp. sororia]

5.5e-48

88.24

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Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQENILEAIYE+DDLENDDVEMVDVEEGEF++ NI+T+KSS+TD+QAPSID +SKNRKRR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKE
        +YTAVGCLGVSALSELIKE
Subjt:  MYTAVGCLGVSALSELIKE

KAG7013367.1 hypothetical protein SDJN02_23531, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.5e-48

88.24

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Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQENILEAIYE+DDLENDDVEMVDVEEGEF++ NI+T+KSS+TD+QAPSID +SKNRKRR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKE
        +YTAVGCLGVSALSELIKE
Subjt:  MYTAVGCLGVSALSELIKE

XP_022959193.1 uncharacterized protein LOC111460255 [Cucurbita moschata]

5.5e-48

88.24

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Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQENILEAIYE+DDLENDDVEMVDVEEGEF++ NI+T+KSS+TD+QAPSID +SKNRKRR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKE
        +YTAVGCLGVSALSELIKE
Subjt:  MYTAVGCLGVSALSELIKE

XP_023006092.1 uncharacterized protein LOC111498940 [Cucurbita maxima]

3.5e-47

87.39

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Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQENILEAIYE+DDLENDDVEMVDVEEGE ++ NI+T+KSS+TD+QAPSID RSKNRKRR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKE
        +YTAVGCLGVSALSE IKE
Subjt:  MYTAVGCLGVSALSELIKE

XP_023547831.1 uncharacterized protein LOC111806680 [Cucurbita pepo subsp. pepo]

2.5e-48

89.08

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Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQENILEAIYE+DDLENDDVEMVDVEEGEF++ NI+T+KSS+TD+QAPSID RSKNRKRR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKE
        +YTAVGCLGVSALSELIKE
Subjt:  MYTAVGCLGVSALSELIKE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBJ7 Phosphorylated adapter RNA export protein

3.2e-46

87.39

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Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQENILEAIYEDD LENDDVEM DVEEGEFID NIN +KSS TD+QAPS DQRSKNRK RTKKKKNKRK+ E GSNGTDINRFVL+ACR LKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKE
        +YTAVGCLGVSALSELIKE
Subjt:  MYTAVGCLGVSALSELIKE

A0A1S3CD38 Phosphorylated adapter RNA export protein

2.9e-47

88.24

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Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQENILEAIYE D+ ENDDVEM DVEEGEFID+NIN +KSS TD+QAPS DQRSKNRKRRTKKKKNKRK+ E GSNGTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKE
        +YTAVGCLGVSALSELIKE
Subjt:  MYTAVGCLGVSALSELIKE

A0A5D3DLH5 Phosphorylated adapter RNA export protein

1.1e-46

87.39

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Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDG ENILEAIYE D+ ENDDVEM DVEEGEFID+NIN +KSS TD+QAPS DQRSKNRKRRTKKKKNKRK+ E GSNGTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKE
        +YTAVGCLGVSALSELIKE
Subjt:  MYTAVGCLGVSALSELIKE

A0A6J1H592 Phosphorylated adapter RNA export protein

2.6e-48

88.24

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Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQENILEAIYE+DDLENDDVEMVDVEEGEF++ NI+T+KSS+TD+QAPSID +SKNRKRR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKE
        +YTAVGCLGVSALSELIKE
Subjt:  MYTAVGCLGVSALSELIKE

A0A6J1KUZ4 Phosphorylated adapter RNA export protein

1.7e-47

87.39

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Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQENILEAIYE+DDLENDDVEMVDVEEGE ++ NI+T+KSS+TD+QAPSID RSKNRKRR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKE
        +YTAVGCLGVSALSE IKE
Subjt:  MYTAVGCLGVSALSELIKE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G20430.1 CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

4.4e-19

48.48

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Query:  MDGQENILEAIYEDDDLEN-DDVEMVDVEEGEF-IDSNI------NTDKSSVTDLQA-----PSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVL
        M+G+E++L+AI E+D  EN +DVEMVDVEEGE  +D ++      N D   V D +A       + Q +KN KR+ KKKK K    +   +   ++ FV 
Subjt:  MDGQENILEAIYEDDDLEN-DDVEMVDVEEGEF-IDSNI------NTDKSSVTDLQA-----PSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVL

Query:  DACRRLKEKKSYMMYTAVGCLGVSALSELIKE
        D CRRLKEKKSYM+YTAVGCLG++ALS+L+ E
Subjt:  DACRRLKEKKSYMMYTAVGCLGVSALSELIKE

Sequences

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CDS sequence

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ATGGATGGACAAGAGAACATACTTGAGGCCATATATGAAGACGATGACTTGGAAAATGATGATGTTGAAATGGTTGATGTGGAAGAAGGAGAGTTCATAGATAGCAATAT
CAATACAGATAAAAGCAGTGTTACTGATCTCCAAGCACCAAGTATAGATCAGAGAAGTAAAAATCGTAAACGTCGGACAAAGAAAAAGAAGAACAAAAGAAAGGCATGCG
AGTCAGGTTCAAATGGCACTGATATTAACAGGTTTGTGTTGGATGCATGCAGACGTTTGAAAGAGAAAAAGTCATACATGATGTACACTGCTGTAGGTTGTCTGGGAGTC
TCTGCATTAAGCGAACTTATCAAAGAGCCCCCTAACTCCAGTAAGTATCATACCACACAGTCACTCTTCATATTTAATCAGTATTATTTCCTACCCTTGCAGATTCTGTT
GCCGAAGTCATTTTGCTCCTTTTAA

mRNA sequence

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AAAACCCTAAATACTATTTCTTCTCCCTCTCACTGCATTAGCAATTTAGCAGTTAGCAGTGAGAAGTTCAGCGCCCATTTTTCCCCTTTTCCTTGTTCTCCAATCTTCAT
ATTTCCTTCGGAGCTTCTCTACTACAACCCTCTCCGCCGCACTCGCATCCCATTTCCATCGCTCTCTTCCTTCAGATTCCCCGTTAAAGCTTCACCTCCCCACTCGATTA
TTCCTCTCTTTACTTTCTGGTTGAGGTATCTTATGGATGGACAAGAGAACATACTTGAGGCCATATATGAAGACGATGACTTGGAAAATGATGATGTTGAAATGGTTGAT
GTGGAAGAAGGAGAGTTCATAGATAGCAATATCAATACAGATAAAAGCAGTGTTACTGATCTCCAAGCACCAAGTATAGATCAGAGAAGTAAAAATCGTAAACGTCGGAC
AAAGAAAAAGAAGAACAAAAGAAAGGCATGCGAGTCAGGTTCAAATGGCACTGATATTAACAGGTTTGTGTTGGATGCATGCAGACGTTTGAAAGAGAAAAAGTCATACA
TGATGTACACTGCTGTAGGTTGTCTGGGAGTCTCTGCATTAAGCGAACTTATCAAAGAGCCCCCTAACTCCAGTAAGTATCATACCACACAGTCACTCTTCATATTTAAT
CAGTATTATTTCCTACCCTTGCAGATTCTGTTGCCGAAGTCATTTTGCTCCTTTTAA

Protein sequence

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MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGV
SALSELIKEPPNSSKYHTTQSLFIFNQYYFLPLQILLPKSFCSF

Lsi09G019080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome