; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi09G019250 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G019250
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUbiquitin-related modifier 1 homolog
Genome locationchr09:28087218..28089310
RNA-Seq ExpressionLsi09G019250
SyntenyLsi09G019250
Gene Ontology termsGO:0002098 - tRNA wobble uridine modification (biological process)
GO:0032447 - protein urmylation (biological process)
GO:0034227 - tRNA thio-modification (biological process)
GO:0005829 - cytosol (cellular component)
InterPro domainsIPR012675 - Beta-grasp domain superfamily
IPR015221 - Ubiquitin-related modifier 1
IPR016155 - Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040023.1 ubiquitin-related modifier 1-like protein 2 [Cucumis melo var. makuwa]7.9e-4677.34Show/hide
Query:  MDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND
        MDMT+ LDFKCSGGLELLC+SVKIHNVSIDPENGVGK                         LIMKDLLSWVR NLIKERPEMFMKGDTVRPGVLVLVND
Subjt:  MDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND

Query:  CDWELSGQLDTTLEEKDVVVFISTLHGG
        CDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  CDWELSGQLDTTLEEKDVVVFISTLHGG

KAG7013351.1 Ubiquitin-related modifier 1-like 1 [Cucurbita argyrosperma subsp. argyrosperma]2.1e-4375Show/hide
Query:  MDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND
        ++MTVIL FKCSGGLELLCDS KIH+V +DPENG G    N    N   GS           LIMKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVND
Subjt:  MDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND

Query:  CDWELSGQLDTTLEEKDVVVFISTLHGG
        CDWELSGQLDT LEEKDVVVFISTLHGG
Subjt:  CDWELSGQLDTTLEEKDVVVFISTLHGG

KAG7026033.1 Ubiquitin-related modifier 1-like 2, partial [Cucurbita argyrosperma subsp. argyrosperma]8.7e-4575.78Show/hide
Query:  MDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND
        +DMTVIL FKCSGGLELLCDSVKIHNVSI+PENG GK                         L+MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVND
Subjt:  MDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND

Query:  CDWELSGQLDTTLEEKDVVVFISTLHGG
        CDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  CDWELSGQLDTTLEEKDVVVFISTLHGG

XP_022145475.1 ubiquitin-related modifier 1 homolog 2 isoform X1 [Momordica charantia]5.1e-4575.78Show/hide
Query:  MDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND
        MDMT++L FKCSGGLELLC+SVKIHNVSIDPENG GK                         LIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND
Subjt:  MDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND

Query:  CDWELSGQLDTTLEEKDVVVFISTLHGG
        CDWELSGQLDT LEEKDVVVFISTLHGG
Subjt:  CDWELSGQLDTTLEEKDVVVFISTLHGG

XP_038876424.1 ubiquitin-related modifier 1 homolog 2 isoform X2 [Benincasa hispida]4.2e-4779.69Show/hide
Query:  MDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND
        MDMTVIL FKCSGGLELLCDSVKIHNVSIDPENGVGK                         LIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND
Subjt:  MDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND

Query:  CDWELSGQLDTTLEEKDVVVFISTLHGG
        CDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  CDWELSGQLDTTLEEKDVVVFISTLHGG

TrEMBL top hitse value%identityAlignment
A0A0A0KCT7 Ubiquitin-related modifier 1 homolog2.2e-4677.34Show/hide
Query:  MDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND
        MDMT+ILDFKCSGGLELLC+SVKIHNVSIDPENGVGK                          IMKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVND
Subjt:  MDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND

Query:  CDWELSGQLDTTLEEKDVVVFISTLHGG
        CDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  CDWELSGQLDTTLEEKDVVVFISTLHGG

A0A1S3CCC7 Ubiquitin-related modifier 1 homolog1.7e-4169.78Show/hide
Query:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDT
        MQLTLEFG               GGLELLC+SVKIHNVSIDPENGVGK                         LIMKDLLSWVR NLIKERPEMFMKGDT
Subjt:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDT

Query:  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

A0A5D3DLM7 Ubiquitin-related modifier 1 homolog3.8e-4677.34Show/hide
Query:  MDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND
        MDMT+ LDFKCSGGLELLC+SVKIHNVSIDPENGVGK                         LIMKDLLSWVR NLIKERPEMFMKGDTVRPGVLVLVND
Subjt:  MDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND

Query:  CDWELSGQLDTTLEEKDVVVFISTLHGG
        CDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  CDWELSGQLDTTLEEKDVVVFISTLHGG

A0A6J1CUK8 Ubiquitin-related modifier 1 homolog2.5e-4575.78Show/hide
Query:  MDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND
        MDMT++L FKCSGGLELLC+SVKIHNVSIDPENG GK                         LIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND
Subjt:  MDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVND

Query:  CDWELSGQLDTTLEEKDVVVFISTLHGG
        CDWELSGQLDT LEEKDVVVFISTLHGG
Subjt:  CDWELSGQLDTTLEEKDVVVFISTLHGG

A0A6J1KGQ8 Ubiquitin-related modifier 1 homolog1.7e-4169.06Show/hide
Query:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDT
        MQLTLEFG               GGLELLCDSVKIHNVSI+PENGVGK                         L+MKDLLSWVR+NLIKERPEMFMKGDT
Subjt:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDT

Query:  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Subjt:  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

SwissProt top hitse value%identityAlignment
A0MDQ1 Ubiquitin-related modifier 1 homolog 14.1e-3761.87Show/hide
Query:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDT
        MQLTLEFG               GGLELLCDS KIH V++D  NG    +D+F                      MK LLSWVRTNLIKERPEMFMKGDT
Subjt:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDT

Query:  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        VRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Subjt:  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

B3H7G2 Ubiquitin-related modifier 1 homolog 21.8e-3764.03Show/hide
Query:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDT
        MQ TLEFG               GGLELLCDSVKIH V             N  L+N+     SD        L MKDLLSWVRTNLIKERPEMFMKGDT
Subjt:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDT

Query:  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        VRPGVLVLVNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Subjt:  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

B6SXH2 Ubiquitin-related modifier 1 homolog5.3e-2953.19Show/hide
Query:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCD-SVKIHNVSI-DPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKG
        M LTLEFG               GGLELL + S K+H V +  P++G GKV                          MK LLSWV+ NLIKERPEMF+K 
Subjt:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCD-SVKIHNVSI-DPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKG

Query:  DTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        D+VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Subjt:  DTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

Q0D6M1 Ubiquitin-related modifier 1 homolog2.6e-3153.57Show/hide
Query:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCD-SVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGD
        M LTLEFG               GGLELL + S K+H V + P +G GKV                         +MK LL+WV++NLIKERPEMF+KGD
Subjt:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCD-SVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGD

Query:  TVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        +VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Subjt:  TVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

Q7GBC8 Ubiquitin-related modifier 1 homolog2.6e-3153.57Show/hide
Query:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCD-SVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGD
        M LTLEFG               GGLELL + S K+H V + P +G GKV                         +MK LL+WV++NLIKERPEMF+KGD
Subjt:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCD-SVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGD

Query:  TVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        +VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Subjt:  TVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

Arabidopsis top hitse value%identityAlignment
AT2G45695.1 Ubiquitin related modifier 12.9e-3861.87Show/hide
Query:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDT
        MQLTLEFG               GGLELLCDS KIH V++D  NG    +D+F                      MK LLSWVRTNLIKERPEMFMKGDT
Subjt:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDT

Query:  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        VRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Subjt:  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

AT3G61113.1 Ubiquitin related modifier 11.3e-3864.03Show/hide
Query:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDT
        MQ TLEFG               GGLELLCDSVKIH V             N  L+N+     SD        L MKDLLSWVRTNLIKERPEMFMKGDT
Subjt:  MQLTLEFGIYTMDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDT

Query:  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
        VRPGVLVLVNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Subjt:  VRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACTGACACTTGAATTTGGTATTTATACGATGGACATGACAGTAATATTAGACTTTAAATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGTGAAGATCCATAA
TGTCAGCATTGATCCTGAAAATGGAGTGGGAAAGGTAAATGATAATTTTCAACTAGTTAATGAAAGATCCGGGTCAATATCAGATCATATTTTCGTGCTTTATCCCTCTT
TAATTATGAAAGATTTGCTGTCTTGGGTCCGTACTAACCTGATCAAGGAGCGGCCAGAAATGTTTATGAAAGGCGACACTGTAAGACCTGGTGTTCTGGTGCTTGTAAAT
GATTGTGATTGGGAGCTTAGTGGGCAGCTTGACACAACATTGGAAGAGAAAGACGTGGTAGTGTTCATATCCACCTTGCATGGAGGCTAG
mRNA sequenceShow/hide mRNA sequence
TTTGTACTCTAAATAGGGCATGAAACCCAAAGATCTGATCTTTGTCTTCTCTCTAGGGTTTTAGGGTTCCGCGGAAGGAAATTCAAAATGCAACTGACACTTGAATTTGG
TATTTATACGATGGACATGACAGTAATATTAGACTTTAAATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGTGAAGATCCATAATGTCAGCATTGATCCTGAAAATG
GAGTGGGAAAGGTAAATGATAATTTTCAACTAGTTAATGAAAGATCCGGGTCAATATCAGATCATATTTTCGTGCTTTATCCCTCTTTAATTATGAAAGATTTGCTGTCT
TGGGTCCGTACTAACCTGATCAAGGAGCGGCCAGAAATGTTTATGAAAGGCGACACTGTAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTTAGTGG
GCAGCTTGACACAACATTGGAAGAGAAAGACGTGGTAGTGTTCATATCCACCTTGCATGGAGGCTAGTTTGATCAGGAATATGTCTCTTTCAGCTTGTATCTACTAAATG
GTTGTCTGAGATAATATGGTACTTGGGCATTTTAACCTTTAAAATCTGTATTTTTCCTGACATTCGTCCCACCATATGATATGAACATTGTTACCTTAAAATATATGCAT
TATAATCTTGATCAGATTTTGCTCTGAGCCTTGTGAAATCATCTCATGTTGAATAACCGAATAAATTAGAAGGAAGGCTATATTATAGGAAAGTCTATTAAATCTTGGGT
TGGTTTTATTCTAAGTATCTAATGTTTCAAAAGTAATATTTTATTTTAATCCTTAAAAGTGGTCTTTAAACTCTA
Protein sequenceShow/hide protein sequence
MQLTLEFGIYTMDMTVILDFKCSGGLELLCDSVKIHNVSIDPENGVGKVNDNFQLVNERSGSISDHIFVLYPSLIMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVN
DCDWELSGQLDTTLEEKDVVVFISTLHGG