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Lsi09G019300 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi09G019300
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLysM domain-containing protein
Genome locationchr09:28122782..28123018
RNA-Seq ExpressionLsi09G019300
SyntenyLsi09G019300
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040027.1 hypothetical protein E6C27_scaffold122G003130 [Cucumis melo var. makuwa]1.8e-2381.69Show/hide
Query:  MVVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL
        M +I VVASAESKPC+DIY+VKEGETLHTIS KC +PFIVD+NP IQ+SDDVFPGLLIQIT T INSRKLL
Subjt:  MVVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL
KAG6574776.1 hypothetical protein SDJN03_25415, partial [Cucurbita argyrosperma subsp. sororia]1.6e-1968.06Show/hide
Query:  MVVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF
        ++ + ++ASA+S PCDDIY+V+EGE+LH+IS KC +PFIVD+NPQIQ+SDDVFPGLLI+IT + +NSRKLLF
Subjt:  MVVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF
KAG7013356.1 hypothetical protein SDJN02_23520, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-1969.01Show/hide
Query:  VVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF
        + + ++ASA+S PCDDIY+V+EGE+LH+IS KC +PFIVD+NPQIQ+SDDVFPGLLI+IT + +NSRKLLF
Subjt:  VVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF
KGN46208.1 hypothetical protein Csa_005039 [Cucumis sativus]8.1e-2481.69Show/hide
Query:  MVVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL
        M +I VVASAES+PCDDIY+VKEGETLHTIS KC +PFIVD+NP IQ+SDDVFPGLLIQIT T INSRKLL
Subjt:  MVVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL
XP_022959284.1 uncharacterized protein LOC111460313 [Cucurbita moschata]2.7e-1969.01Show/hide
Query:  VVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF
        + + ++ASA+S PCDDIY+V+EGE+LH+IS KC +PFIVD+NPQIQ+SDDVFPGLLI+IT + +NSRKLLF
Subjt:  VVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF
TrEMBL top hitse value%identityAlignment
A0A0A0K9P3 LysM domain-containing protein3.9e-2481.69Show/hide
Query:  MVVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL
        M +I VVASAES+PCDDIY+VKEGETLHTIS KC +PFIVD+NP IQ+SDDVFPGLLIQIT T INSRKLL
Subjt:  MVVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL
A0A5D3DLK6 Uncharacterized protein8.8e-2481.69Show/hide
Query:  MVVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL
        M +I VVASAESKPC+DIY+VKEGETLHTIS KC +PFIVD+NP IQ+SDDVFPGLLIQIT T INSRKLL
Subjt:  MVVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL
A0A6A1VEZ7 LysM domain-containing protein5.7e-1571.19Show/hide
Query:  KPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL
        +PCD+IY+V EGETLHTIS KCS+PFIV+ NP IQ+ DDVFPGL+I+I  TP NS KLL
Subjt:  KPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL
A0A6J1H7L7 uncharacterized protein LOC1114603131.3e-1969.01Show/hide
Query:  VVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF
        + + ++ASA+S PCDDIY+V+EGE+LH+IS KC +PFIVD+NPQIQ+SDDVFPGLLI+IT + +NSRKLLF
Subjt:  VVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF
A0A6J1KYG6 uncharacterized protein LOC1114993543.8e-1967.61Show/hide
Query:  VVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF
        + + ++ASA+S PCDDIY+V+EGE+LH+IS KC +PFIVD+NPQIQ+SDDVFPGLLI+IT + +NSRKL F
Subjt:  VVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein1.8e-1368.09Show/hide
Query:  CDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQIT
        CD+IY VKEGETL TIS KC +P+IV+ NP I + DD+FPGLLI+IT
Subjt:  CDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQIT
AT4G25433.1 peptidoglycan-binding LysM domain-containing protein6.2e-1460.42Show/hide
Query:  KPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQI
        +PC+++Y+V EG+TLH+IS KC +PFIV+ NP I + DDVFPGLLI++
Subjt:  KPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQI
AT5G62150.1 peptidoglycan-binding LysM domain-containing protein4.3e-1561.02Show/hide
Query:  SKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKL
        +KPC++IYIV EGETLHTI  KC +PFIV+ NP I + DDVFPGL+++I     N RKL
Subjt:  SKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGATCACAGTGGTGGCATCTGCAGAATCCAAGCCTTGCGACGACATCTACATCGTCAAAGAAGGTGAGACGCTGCACACAATCAGCACCAAGTGCAGCAATCC
CTTCATTGTTGACCACAATCCCCAGATTCAAGAGTCAGATGATGTTTTCCCAGGACTCCTCATCCAAATTACCACTACCCCCATCAACTCCAGGAAGTTGCTTTTCAGCT
ATATACCCCCAATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTGATCACAGTGGTGGCATCTGCAGAATCCAAGCCTTGCGACGACATCTACATCGTCAAAGAAGGTGAGACGCTGCACACAATCAGCACCAAGTGCAGCAATCC
CTTCATTGTTGACCACAATCCCCAGATTCAAGAGTCAGATGATGTTTTCCCAGGACTCCTCATCCAAATTACCACTACCCCCATCAACTCCAGGAAGTTGCTTTTCAGCT
ATATACCCCCAATATAA
Protein sequenceShow/hide protein sequence
MVVITVVASAESKPCDDIYIVKEGETLHTISTKCSNPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLFSYIPPI