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Lsi10G000150 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G000150
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMitochondrial transcription termination factor family protein
Genome locationchr10:272562..287915
RNA-Seq ExpressionLsi10G000150
SyntenyLsi10G000150
Gene Ontology termsGO:0006353 - DNA-templated transcription, termination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009658 - chloroplast organization (biological process)
GO:0032502 - developmental process (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646817.1 hypothetical protein Csa_005087 [Cucumis sativus]1.7e-1380.77Show/hide
Query:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
        +ALDIPEK LGKMILLNPRLI YSIVPKLTEIVDF  +FGLDK+G+I KVL+
Subjt:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
KAE9607297.1 putative transcription regulator mTERF family [Lupinus albus]2.9e-1371.67Show/hide
Query:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI---HIAGF
        +ALDIPEKQLGK+ILLNPRLISYSI  KL EIVDFL S GL+K+GMIGKV++   +I G+
Subjt:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI---HIAGF
PSS21835.1 Transcription termination factor like [Actinidia chinensis var. chinensis]5.0e-1376.92Show/hide
Query:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
        +AL +PEKQLGKM+LLNPR+ISYSI  KL++IVDFL SFGL KEGMIGKVL+
Subjt:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
XP_021636168.1 transcription termination factor MTERF6, chloroplastic/mitochondrial [Hevea brasiliensis]2.9e-1378.85Show/hide
Query:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
        +AL +PEKQLGK+ILLNPRLISYSI PKLTEIVDFL   GL+K+GMIGKVL+
Subjt:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
XP_031744171.1 LOW QUALITY PROTEIN: transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis sativus]1.7e-1380.77Show/hide
Query:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
        +ALDIPEK LGKMILLNPRLI YSIVPKLTEIVDF  +FGLDK+G+I KVL+
Subjt:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
TrEMBL top hitse value%identityAlignment
A0A0A0KE07 Uncharacterized protein8.3e-1480.77Show/hide
Query:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
        +ALDIPEK LGKMILLNPRLI YSIVPKLTEIVDF  +FGLDK+G+I KVL+
Subjt:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
A0A2R6R766 Transcription termination factor like2.4e-1376.92Show/hide
Query:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
        +AL +PEKQLGKM+LLNPR+ISYSI  KL++IVDFL SFGL KEGMIGKVL+
Subjt:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
A0A6A4Q021 Putative transcription regulator mTERF family1.4e-1371.67Show/hide
Query:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI---HIAGF
        +ALDIPEKQLGK+ILLNPRLISYSI  KL EIVDFL S GL+K+GMIGKV++   +I G+
Subjt:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI---HIAGF
A0A6A6MLL1 Uncharacterized protein1.4e-1378.85Show/hide
Query:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
        +AL +PEKQLGK+ILLNPRLISYSI PKLTEIVDFL   GL+K+GMIGKVL+
Subjt:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
A0A6J1BSC3 transcription termination factor MTERF6, chloroplastic/mitochondrial3.1e-1382.35Show/hide
Query:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVL
        +AL +PEKQLGKMILLNPRLISYSI  KLTEIVDFL S GL +EGMIGKVL
Subjt:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVL
SwissProt top hitse value%identityAlignment
Q9SZL6 Transcription termination factor MTERF6, chloroplastic/mitochondrial1.4e-1373.08Show/hide
Query:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
        +AL +PE QLGKMIL NPRLISYSI  KLT IV FL S GLD++GMIGKVL+
Subjt:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
Arabidopsis top hitse value%identityAlignment
AT4G38160.1 Mitochondrial transcription termination factor family protein9.6e-1573.08Show/hide
Query:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
        +AL +PE QLGKMIL NPRLISYSI  KLT IV FL S GLD++GMIGKVL+
Subjt:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
AT4G38160.2 Mitochondrial transcription termination factor family protein9.6e-1573.08Show/hide
Query:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
        +AL +PE QLGKMIL NPRLISYSI  KLT IV FL S GLD++GMIGKVL+
Subjt:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
AT4G38160.3 Mitochondrial transcription termination factor family protein9.6e-1573.08Show/hide
Query:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI
        +AL +PE QLGKMIL NPRLISYSI  KLT IV FL S GLD++GMIGKVL+
Subjt:  KALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAAGGCATTGGATATCCCTGAGAAGCAACTTGGGAAGATGATTTTGCTCAATCCCAGGCTTATTAGCTACAGCATTGTGCCGAAACTTACTGAGATTGTGGACTT
TCTTACTAGTTTTGGCCTTGATAAGGAAGGGATGATTGGCAAAGTTTTGATACACATTGCTGGATTCTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAAGGCATTGGATATCCCTGAGAAGCAACTTGGGAAGATGATTTTGCTCAATCCCAGGCTTATTAGCTACAGCATTGTGCCGAAACTTACTGAGATTGTGGACTT
TCTTACTAGTTTTGGCCTTGATAAGGAAGGGATGATTGGCAAAGTTTTGATACACATTGCTGGATTCTGGTGA
Protein sequenceShow/hide protein sequence
MPKALDIPEKQLGKMILLNPRLISYSIVPKLTEIVDFLTSFGLDKEGMIGKVLIHIAGFW