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Lsi10G000170 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G000170
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-H2 finger protein ATL18-like
Genome locationchr10:290201..290623
RNA-Seq ExpressionLsi10G000170
SyntenyLsi10G000170
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016020 - membrane (cellular component)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010790.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma]7.0e-4262.14Show/hide
Query:  LLFFKTFFWIPLFTLYQPILAVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDD----EEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRL
        ++FF TF WIPLF + + IL +A++FR  S P++  S   TLLV  Y+ LQRSDD    EE+CSICLTEFA EDSVC+LPDCAHVFHF+CI+KW +RNR 
Subjt:  LLFFKTFFWIPLFTLYQPILAVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDD----EEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRL

Query:  TCPLCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ
        TCPLCRCFFN +  H        LRF+VPDNPS LYYFLQ
Subjt:  TCPLCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ

XP_022944066.1 RING-H2 finger protein ATL18-like [Cucurbita moschata]7.0e-4262.86Show/hide
Query:  LLFFKTFFWIPLFTLYQPILAVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDD----EEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRL
        ++FF TF WIPLF + + IL VA++FR  S P++  S   TLLV  Y+ LQRSDD    EE+CSICLTEFA EDSVC+LPDCAHVFHF+CI+KW +RNR 
Subjt:  LLFFKTFFWIPLFTLYQPILAVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDD----EEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRL

Query:  TCPLCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ
        TCPLCRCFFN +  H        LRF+VPDNPS LYYFLQ
Subjt:  TCPLCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ

XP_022947864.1 E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata]8.0e-3860.58Show/hide
Query:  FFKTFFWIPLFTLYQPILAVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDD---EEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTCP
        FF T+ WIPL  L   I+   ++FR    P+   S+  TLLV  Y+ LQRSDD   EEICSICL EFA  DSVC LPDC+HVFHF+CI+KWL+RNR TCP
Subjt:  FFKTFFWIPLFTLYQPILAVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDD---EEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTCP

Query:  LCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ
        LCRCFF F  R   N +   L+F+VPDNPSCLYYFLQ
Subjt:  LCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ

XP_023512248.1 RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo]5.3e-4262.86Show/hide
Query:  LLFFKTFFWIPLFTLYQPILAVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDD----EEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRL
        ++FF TF WIPLF + + IL VA++FR  S P++  S   TLLV  Y+ LQRSDD    EE+CSICLTEFA EDSVC+LPDCAHVFHF+CI+KW +RNR 
Subjt:  LLFFKTFFWIPLFTLYQPILAVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDD----EEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRL

Query:  TCPLCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ
        TCPLCRCFFN +  H        LRF+VPDNPS LYYFLQ
Subjt:  TCPLCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ

XP_038902378.1 probable E3 ubiquitin-protein ligase RHA4A [Benincasa hispida]1.8e-4269.85Show/hide
Query:  FFWIPLFTLYQPILAVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDD-----EEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTCPLC
        F  I LF L Q ILAVATLFRR S P+   S+A TLLV TY+ LQR+DD     EEICSICL EFA EDSV +LPDC HV+HFNCI+KWL+RNR TCPLC
Subjt:  FFWIPLFTLYQPILAVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDD-----EEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTCPLC

Query:  RC-FFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ
        RC FFN +NRH    NNTNL F+VPDNPSCLYYFLQ
Subjt:  RC-FFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ

TrEMBL top hitse value%identityAlignment
A0A5A7TXY0 RING-H2 finger protein ATL18-like1.5e-3458.45Show/hide
Query:  MRFLLLFFKTFFWIPLFTLYQPIL-AVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDDEEICSICLTEFA-TEDSVCQLPDCAHVFHFNCIQKWLDRN
        MRF +LFF TF WIPLF + Q IL  VAT+F   S PQ        ++V +Y        EEICSICLTEF  +EDSVC+LP+C H+FHFNCIQ+W+DRN
Subjt:  MRFLLLFFKTFFWIPLFTLYQPIL-AVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDDEEICSICLTEFA-TEDSVCQLPDCAHVFHFNCIQKWLDRN

Query:  RLTCPLCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ
        R TCPLCRCFF   N    +  +T  RFLVPDNPS LYYFLQ
Subjt:  RLTCPLCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ

A0A5D3BPT9 RING-H2 finger protein ATL18-like2.3e-3559.15Show/hide
Query:  MRFLLLFFKTFFWIPLFTLYQPIL-AVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDDEEICSICLTEFA-TEDSVCQLPDCAHVFHFNCIQKWLDRN
        MRF +LFF TF WIPLF + Q IL  VAT+F R S PQ        ++V +Y        EEICSICLTEF  +EDSVC+LP+C H+FHFNCIQ+W+DRN
Subjt:  MRFLLLFFKTFFWIPLFTLYQPIL-AVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDDEEICSICLTEFA-TEDSVCQLPDCAHVFHFNCIQKWLDRN

Query:  RLTCPLCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ
        R TCPLCRCFF   N    +  +T  RFLVPDNPS LYYFLQ
Subjt:  RLTCPLCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ

A0A6J1FTE6 RING-H2 finger protein ATL18-like3.4e-4262.86Show/hide
Query:  LLFFKTFFWIPLFTLYQPILAVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDD----EEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRL
        ++FF TF WIPLF + + IL VA++FR  S P++  S   TLLV  Y+ LQRSDD    EE+CSICLTEFA EDSVC+LPDCAHVFHF+CI+KW +RNR 
Subjt:  LLFFKTFFWIPLFTLYQPILAVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDD----EEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRL

Query:  TCPLCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ
        TCPLCRCFFN +  H        LRF+VPDNPS LYYFLQ
Subjt:  TCPLCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ

A0A6J1G855 E3 ubiquitin-protein ligase ATL41-like3.9e-3860.58Show/hide
Query:  FFKTFFWIPLFTLYQPILAVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDD---EEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTCP
        FF T+ WIPL  L   I+   ++FR    P+   S+  TLLV  Y+ LQRSDD   EEICSICL EFA  DSVC LPDC+HVFHF+CI+KWL+RNR TCP
Subjt:  FFKTFFWIPLFTLYQPILAVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDD---EEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTCP

Query:  LCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ
        LCRCFF F  R   N +   L+F+VPDNPSCLYYFLQ
Subjt:  LCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ

A0A6J1I5X8 RING-H2 finger protein ATL185.2e-3557.25Show/hide
Query:  LFFKTFFWIPLFTLYQPILAVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDD---EEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTC
        +FF T+ WIPL  L   I+   ++FR    P+   S+  TLLV  Y+ LQR  D   EEICSICL EFA  DSVC L DC+HVFHF+CI+KWL+RNR TC
Subjt:  LFFKTFFWIPLFTLYQPILAVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDD---EEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTC

Query:  PLCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ
        PLCRCFF F   +  N +   L+F+VPDNPSCLYYFLQ
Subjt:  PLCRCFFNFQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ

SwissProt top hitse value%identityAlignment
Q84W40 RING-H2 finger protein ATL111.1e-0842.86Show/hide
Query:  PTLLVTTYQRLQRSDDEEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTCPLCR
        PT   +T + L+   +   CS+CL EF  ++++  +P C HVFH  CI  WL R+  TCPLCR
Subjt:  PTLLVTTYQRLQRSDDEEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTCPLCR

Q9SUS4 Probable E3 ubiquitin-protein ligase RHA1A6.6e-1140.28Show/hide
Query:  PQLHFSNAPTLLVTTYQRLQRSDDEEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWL-DRNRLTCPLCR
        P + FS+ PT            D E+ C++CL++F ++D V QLP C HVFH  C+ +W+ D N++ CP+CR
Subjt:  PQLHFSNAPTLLVTTYQRLQRSDDEEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWL-DRNRLTCPLCR

Q9SUS5 E3 ubiquitin-protein ligase RHA1B6.0e-1239.51Show/hide
Query:  RQSPPQLHFSNAPTLL-----VTTYQRLQRSDDEEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWL-DRNRLTCPLCR
        R  P +L  S + TL      V  +  L  +D E+ C++CL++F ++D + QLP C HVFH  C+ +W+ D N++TCP+CR
Subjt:  RQSPPQLHFSNAPTLL-----VTTYQRLQRSDDEEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWL-DRNRLTCPLCR

Q9SZL4 RING-H2 finger protein ATL185.4e-1349.28Show/hide
Query:  QRSDDEEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTCPLCRCFFNFQNRHFHNNNNTN
        +  ++E  C ICL EF  ED+V  LP CAH+FH NCI+ WL R  LTCPLCR F         N NN +
Subjt:  QRSDDEEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTCPLCRCFFNFQNRHFHNNNNTN

Q9XF92 Brassinosteroid-responsive RING protein 18.1e-0939.39Show/hide
Query:  LLVTTYQRLQRSDDE--EICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTCPLCRCFF
        L V  ++ L  S ++  E C++CL EF  E  +  L +C H+FH +C+ +W+D ++ TCPLCR  F
Subjt:  LLVTTYQRLQRSDDE--EICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTCPLCRCFF

Arabidopsis top hitse value%identityAlignment
AT4G11360.1 RING-H2 finger A1B4.2e-1339.51Show/hide
Query:  RQSPPQLHFSNAPTLL-----VTTYQRLQRSDDEEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWL-DRNRLTCPLCR
        R  P +L  S + TL      V  +  L  +D E+ C++CL++F ++D + QLP C HVFH  C+ +W+ D N++TCP+CR
Subjt:  RQSPPQLHFSNAPTLL-----VTTYQRLQRSDDEEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWL-DRNRLTCPLCR

AT4G11370.1 RING-H2 finger A1A4.7e-1240.28Show/hide
Query:  PQLHFSNAPTLLVTTYQRLQRSDDEEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWL-DRNRLTCPLCR
        P + FS+ PT            D E+ C++CL++F ++D V QLP C HVFH  C+ +W+ D N++ CP+CR
Subjt:  PQLHFSNAPTLLVTTYQRLQRSDDEEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWL-DRNRLTCPLCR

AT4G38140.1 RING/U-box superfamily protein3.8e-1449.28Show/hide
Query:  QRSDDEEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTCPLCRCFFNFQNRHFHNNNNTN
        +  ++E  C ICL EF  ED+V  LP CAH+FH NCI+ WL R  LTCPLCR F         N NN +
Subjt:  QRSDDEEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTCPLCRCFFNFQNRHFHNNNNTN

AT5G37250.1 RING/U-box superfamily protein2.0e-1041.77Show/hide
Query:  FSNAPTLLVTTYQRLQR----------SDDEEICSICLTEFAT--EDSVCQLPDCAHVFHFNCIQKWLDRNRLTCPLCR
        FS+       T+QRL             ++E  CSICL +F+   +D++  LPDC H+FH NCI +WL R R +CPLCR
Subjt:  FSNAPTLLVTTYQRLQR----------SDDEEICSICLTEFAT--EDSVCQLPDCAHVFHFNCIQKWLDRNRLTCPLCR

AT5G43200.1 Zinc finger, C3HC4 type (RING finger) family protein1.0e-1143.08Show/hide
Query:  PTLLVTTYQRLQRSDDEE--ICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTCPLCR
        P L     Q + + ++EE   C+ICL E +T D  C+LP+C H FH  C+ +WL R   +CPLCR
Subjt:  PTLLVTTYQRLQRSDDEE--ICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTCPLCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGATTCCTTCTCCTTTTCTTCAAAACTTTCTTCTGGATCCCCCTCTTCACTCTCTACCAACCCATTCTCGCCGTCGCCACTCTTTTCCGCCGCCAATCCCCGCCGCA
ACTTCACTTCTCCAACGCCCCAACTCTGCTGGTGACGACATACCAACGTTTGCAGAGGAGCGACGATGAGGAGATTTGCTCCATCTGTTTAACGGAGTTCGCAACAGAAG
ATTCCGTCTGCCAATTGCCGGATTGTGCGCATGTTTTTCATTTCAATTGCATCCAGAAATGGCTGGACAGGAATCGCCTCACTTGCCCGCTCTGTAGATGCTTCTTCAAT
TTCCAGAATCGCCATTTTCACAACAACAACAACACTAACCTCCGCTTCCTCGTTCCAGATAATCCTTCCTGCCTCTATTATTTCTTGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGATTCCTTCTCCTTTTCTTCAAAACTTTCTTCTGGATCCCCCTCTTCACTCTCTACCAACCCATTCTCGCCGTCGCCACTCTTTTCCGCCGCCAATCCCCGCCGCA
ACTTCACTTCTCCAACGCCCCAACTCTGCTGGTGACGACATACCAACGTTTGCAGAGGAGCGACGATGAGGAGATTTGCTCCATCTGTTTAACGGAGTTCGCAACAGAAG
ATTCCGTCTGCCAATTGCCGGATTGTGCGCATGTTTTTCATTTCAATTGCATCCAGAAATGGCTGGACAGGAATCGCCTCACTTGCCCGCTCTGTAGATGCTTCTTCAAT
TTCCAGAATCGCCATTTTCACAACAACAACAACACTAACCTCCGCTTCCTCGTTCCAGATAATCCTTCCTGCCTCTATTATTTCTTGCAGTGA
Protein sequenceShow/hide protein sequence
MRFLLLFFKTFFWIPLFTLYQPILAVATLFRRQSPPQLHFSNAPTLLVTTYQRLQRSDDEEICSICLTEFATEDSVCQLPDCAHVFHFNCIQKWLDRNRLTCPLCRCFFN
FQNRHFHNNNNTNLRFLVPDNPSCLYYFLQ