; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G000360 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G000360
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRING-type domain-containing protein
Genome locationchr10:574326..577935
RNA-Seq ExpressionLsi10G000360
SyntenyLsi10G000360
Gene Ontology termsNA
InterPro domainsIPR044249 - Probable E3 ubiquitin-protein ligase XERICO-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570965.1 putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. sororia]1.1e-4293.2Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCS
        MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILH+VGIHL SSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILF+KV SCK LEHDCS
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCS

Query:  SVL
          L
Subjt:  SVL

KAG7010803.1 putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-4293.2Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCS
        MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILH+VGIHL SSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILF+KV SCK LEHDCS
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCS

Query:  SVL
          L
Subjt:  SVL

XP_004139989.1 probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus]3.2e-4797.09Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCS
        MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILH+VGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCS
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCS

Query:  SVL
          L
Subjt:  SVL

XP_008448128.1 PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo]6.8e-4595.19Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHL-SSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDC
        MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILH+VGIHL SSS TLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDC
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHL-SSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDC

Query:  SSVL
        S  L
Subjt:  SSVL

XP_038900972.1 probable E3 ubiquitin-protein ligase XERICO [Benincasa hispida]1.2e-4695.15Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCS
        MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILH++G HLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCS
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCS

Query:  SVL
          L
Subjt:  SVL

TrEMBL top hitse value%identityAlignment
A0A0A0KAU4 RING-type domain-containing protein1.6e-4797.09Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCS
        MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILH+VGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCS
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCS

Query:  SVL
          L
Subjt:  SVL

A0A1S3BIY9 probable E3 ubiquitin-protein ligase XERICO3.3e-4595.19Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHL-SSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDC
        MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILH+VGIHL SSS TLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDC
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHL-SSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDC

Query:  SSVL
        S  L
Subjt:  SSVL

A0A5D3DTM0 Putative E3 ubiquitin-protein ligase XERICO3.3e-4595.19Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHL-SSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDC
        MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILH+VGIHL SSS TLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDC
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHL-SSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDC

Query:  SSVL
        S  L
Subjt:  SSVL

A0A6J1FXQ9 probable E3 ubiquitin-protein ligase XERICO5.2e-4393.2Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCS
        MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILH+VGIHL SSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILF+KV SCK LEHDCS
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCS

Query:  SVL
          L
Subjt:  SVL

A0A6J1JEA7 probable E3 ubiquitin-protein ligase XERICO1.2e-4292.23Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCS
        MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILH+VGIHL SSPTLPSSPDSMENAPESIEFHLNPNG+YIEEFRSRIPAILF+KV SCK LEHDCS
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCS

Query:  SVL
          L
Subjt:  SVL

SwissProt top hitse value%identityAlignment
Q9SI09 Probable E3 ubiquitin-protein ligase XERICO1.3e-1955.36Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPD-SMENA--PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSC-KWLE
        MGLSSLP PSEG+L VILVNTALSISI KGIVRS L IVGI LS S + PSS   S EN+   ES +F +    SY+EEFR+R P + F+ +  C K  +
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPD-SMENA--PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSC-KWLE

Query:  HDCSSVLGEVVG
        ++CS  L +  G
Subjt:  HDCSSVLGEVVG

Arabidopsis top hitse value%identityAlignment
AT2G04240.1 RING/U-box superfamily protein9.5e-2155.36Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPD-SMENA--PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSC-KWLE
        MGLSSLP PSEG+L VILVNTALSISI KGIVRS L IVGI LS S + PSS   S EN+   ES +F +    SY+EEFR+R P + F+ +  C K  +
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPD-SMENA--PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSC-KWLE

Query:  HDCSSVLGEVVG
        ++CS  L +  G
Subjt:  HDCSSVLGEVVG

AT2G04240.2 RING/U-box superfamily protein9.5e-2155.36Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPD-SMENA--PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSC-KWLE
        MGLSSLP PSEG+L VILVNTALSISI KGIVRS L IVGI LS S + PSS   S EN+   ES +F +    SY+EEFR+R P + F+ +  C K  +
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPD-SMENA--PESIEFHLNPNGSYIEEFRSRIPAILFDKVRSC-KWLE

Query:  HDCSSVLGEVVG
        ++CS  L +  G
Subjt:  HDCSSVLGEVVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTGGGTGTGATCCTTGTAAATACAGCCTTATCAATTTCTATCTTCAAAGGCATAGTTCGTTCGAT
CCTCCACATTGTTGGCATCCATCTCTCCTCGTCGCCTACATTACCATCGTCACCAGATTCCATGGAGAATGCTCCTGAATCCATAGAATTCCATCTTAATCCAAATGGAA
GTTACATTGAAGAGTTCCGCAGCCGAATCCCAGCAATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTCGAACACGACTGCTCGAGTGTGCTTGGAGAAGTGGTTGGA
TTACTGGAACCTTACATGTCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGACACTTCTTCCTGCTTTTGATTCATTGTTTCCGTGTACCATTCACTGTCTTTGTCCC
AAAGATCCTTGTATTCGTTGAGAAAATGAGTAGAGTATTTGTCTTTCAAGGGGTCGAAGTAATCCGTGTTCGGTTCATTTGTAGCAATGTAAAGGTTTCTTCCAGTCTCG
ATCTTGTCTTGCAACGTCGACAGAAGAGTATCAGATTCCGTTTCTCCTTCACAGACCCGATACCAGTAGTTATCAAGCTCTGCAGATCCAAACTTCCTCAATATCAAGGC
ATCCTTTACATCTGCAAGTTTCATAGGTGTGACCCGAAAGTCCTCAACAAGATGAAGACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTGGGTGTGATCCTTGTAAATACAGCCTTATCAATTTCTATCTTCAAAGGCATAGTTCGTTCGAT
CCTCCACATTGTTGGCATCCATCTCTCCTCGTCGCCTACATTACCATCGTCACCAGATTCCATGGAGAATGCTCCTGAATCCATAGAATTCCATCTTAATCCAAATGGAA
GTTACATTGAAGAGTTCCGCAGCCGAATCCCAGCAATTCTGTTCGACAAAGTTCGTAGCTGCAAATGGCTCGAACACGACTGCTCGAGTGTGCTTGGAGAAGTGGTTGGA
TTACTGGAACCTTACATGTCCACTGTGTCGAACTCCATTAATGCCCGAAGAAGACACTTCTTCCTGCTTTTGATTCATTGTTTCCGTGTACCATTCACTGTCTTTGTCCC
AAAGATCCTTGTATTCGTTGAGAAAATGAGTAGAGTATTTGTCTTTCAAGGGGTCGAAGTAATCCGTGTTCGGTTCATTTGTAGCAATGTAAAGGTTTCTTCCAGTCTCG
ATCTTGTCTTGCAACGTCGACAGAAGAGTATCAGATTCCGTTTCTCCTTCACAGACCCGATACCAGTAGTTATCAAGCTCTGCAGATCCAAACTTCCTCAATATCAAGGC
ATCCTTTACATCTGCAAGTTTCATAGGTGTGACCCGAAAGTCCTCAACAAGATGAAGACCTAA
Protein sequenceShow/hide protein sequence
MEMGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHIVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSSVLGEVVG
LLEPYMSTVSNSINARRRHFFLLLIHCFRVPFTVFVPKILVFVEKMSRVFVFQGVEVIRVRFICSNVKVSSSLDLVLQRRQKSIRFRFSFTDPIPVVIKLCRSKLPQYQG
ILYICKFHRCDPKVLNKMKT