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Lsi10G000390 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G000390
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRPM1-interacting protein 4-like
Genome locationchr10:599672..602565
RNA-Seq ExpressionLsi10G000390
SyntenyLsi10G000390
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646808.1 hypothetical protein Csa_005404 [Cucumis sativus]5.6e-2780.25Show/hide
Query:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQPLCDYSGSEALLVRLLA
        MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKD++ +KNGSVLGKSQP+   S S+ L + L++
Subjt:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQPLCDYSGSEALLVRLLA

KAG6570949.1 Protein NOI4, partial [Cucurbita argyrosperma subsp. sororia]3.3e-2763.96Show/hide
Query:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQP---LCDYSGSEALLVRLLANIKNGFA-ACKLRNRE
        MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GGMPDSPAKDD TYKNGSVLGK QP    C    +E+L   +   ++   +    +R+R 
Subjt:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQP---LCDYSGSEALLVRLLANIKNGFA-ACKLRNRE

Query:  AFGRFDKRGSA
        A G   +R S+
Subjt:  AFGRFDKRGSA

KAG7010787.1 hypothetical protein SDJN02_27583, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-3577.36Show/hide
Query:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQPLCDYSGSEALLVRLLANIKNGFAACKLRNREAFGRFD
        EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GGMPDSPAKDD TYKNGSVLGK QP+     +    +RL+  +KNGFAACKL+NREAF R D
Subjt:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQPLCDYSGSEALLVRLLANIKNGFAACKLRNREAFGRFD

Query:  KRGSAE
        +R SAE
Subjt:  KRGSAE

XP_022943908.1 RPM1-interacting protein 4-like [Cucurbita moschata]9.5e-2795.38Show/hide
Query:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQP
        MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GGMPDSPAKDD TYKNGSVLGK QP
Subjt:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQP

XP_038902743.1 protein NOI4 [Benincasa hispida]6.6e-2898.46Show/hide
Query:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQP
        MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDD TYKNGSVLGKSQP
Subjt:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQP

TrEMBL top hitse value%identityAlignment
A0A0A0KCQ1 AvrRpt-cleavage domain-containing protein6.0e-2793.85Show/hide
Query:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQP
        MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKD++ +KNGSVLGKSQP
Subjt:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQP

A0A1S3CKU3 RPM1-interacting protein 4 isoform X26.0e-2793.85Show/hide
Query:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQP
        MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKD++ +KNGSVLGKSQP
Subjt:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQP

A0A6J1FXH4 RPM1-interacting protein 4-like4.6e-2795.38Show/hide
Query:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQP
        MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GGMPDSPAKDD TYKNGSVLGK QP
Subjt:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQP

A0A6J1I7R1 uncharacterized protein LOC111469905 isoform X11.7e-2692.31Show/hide
Query:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQP
        MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG+PDSPAKDD +YK+G+VLGKSQP
Subjt:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQP

A0A6J1J928 RPM1-interacting protein 4-like4.6e-2795.38Show/hide
Query:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQP
        MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GGMPDSPAKDD TYKNGSVLGK QP
Subjt:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQP

SwissProt top hitse value%identityAlignment
O22633 Protein NOI47.8e-1665.67Show/hide
Query:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTY--KNGSVLGKSQP
        M++KG   PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG P SP K    +    G    K QP
Subjt:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTY--KNGSVLGKSQP

Q8GYN5 RPM1-interacting protein 43.6e-0543.4Show/hide
Query:  LPKFGEWDVNDPASAEGFTVIFNKARNEKKTG----GMPDSPAKDDSTYKNGS
        +PKFG+WD N+P+SA+G+T IFNK R E+ +G    G   +P    S   N +
Subjt:  LPKFGEWDVNDPASAEGFTVIFNKARNEKKTG----GMPDSPAKDDSTYKNGS

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein1.6e-1976.19Show/hide
Query:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTY-KNGSVLGK
        MA+KG   PLPKFGEWDVNDP+SAEGFTVIFNKARNEKK GG  DSP KD+  Y KNG VL K
Subjt:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTY-KNGSVLGK

AT4G35655.1 RPM1-interacting protein 4 (RIN4) family protein4.1e-1255.22Show/hide
Query:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQPLC
        MA    + PLPKFGEWDVNDPA+AEGFTVIF+KA  +KKTG    S +K  S  K   V    + LC
Subjt:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQPLC

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein4.3e-1764.71Show/hide
Query:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTY--KNGSVLGKSQPL
        M++KG   PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG P SP K    +    G    K QP+
Subjt:  MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTY--KNGSVLGKSQPL

AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein1.6e-1668.33Show/hide
Query:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTY--KNGSVLGKSQPL
        PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG P SP K    +    G    K QP+
Subjt:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTY--KNGSVLGKSQPL

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein2.1e-1669.49Show/hide
Query:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTY--KNGSVLGKSQP
        PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG P SP K    +    G    K QP
Subjt:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTY--KNGSVLGKSQP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAAAAGGCAGTAGCAGTCCATTGCCAAAGTTCGGCGAATGGGATGTCAACGACCCAGCATCCGCCGAGGGATTCACAGTAATCTTTAATAAAGCCAGG
AATGAGAAAAAGACTGGTGGCATGCCTGACTCTCCAGCAAAGGATGACTCCACATACAAGAATGGTTCTGTTCTTGGAAAGTCTCAACCTTTATGTGACTACTCG
GGATCGGAAGCTTTGCTTGTTAGACTATTGGCAAATATAAAAAATGGTTTTGCTGCTTGCAAGCTGCGGAATCGTGAAGCTTTTGGGCGATTCGATAAACGGGGT
TCAGCAGAAATGTATAATCTGCAAATTCTCAACAACACGACCGAAAGCTGTATTTAG
mRNA sequenceShow/hide mRNA sequence
TTTATAGTTAAAAAGTTCTTCTCTTTCAACGTCTGGGGGTTGGCGCTTGGGCTATGCACAGCTGGAAGTAGCAGACACCGTTAAACGTCCTTCGAAGCTGCGTAG
ACGAAGGGACCCACTCTCCACTTCTATAACATCCCATTAGCCAACTCCCTCTTCTCTTGGTCCCATTCCCACACCCTCTTCTTCCTTCTCTCTGAATCAATCAAT
CATACACCGGCTTTACCTTCATCAACAACATCATCATCTTCATCATCTTCTTCTTCTTCTTCTTCTTCTCAAACCTCACTCATGGCGGAAAAAGGCAGTAGCAGT
CCATTGCCAAAGTTCGGCGAATGGGATGTCAACGACCCAGCATCCGCCGAGGGATTCACAGTAATCTTTAATAAAGCCAGGAATGAGAAAAAGACTGGTGGCATG
CCTGACTCTCCAGCAAAGGATGACTCCACATACAAGAATGGTTCTGTTCTTGGAAAGTCTCAACCTTTATGTGACTACTCGGGATCGGAAGCTTTGCTTGTTAGA
CTATTGGCAAATATAAAAAATGGTTTTGCTGCTTGCAAGCTGCGGAATCGTGAAGCTTTTGGGCGATTCGATAAACGGGGTTCAGCAGAAATGTATAATCTGCAA
ATTCTCAACAACACGACCGAAAGCTGTATTTAGAACCTGTGATGGATAATGCTGGACTCCATTTGTTAGAAGTTTTGTCAATAATTTGGGGGTTTGGTTGGGGAT
GGATGAAGATGATTAATCATCATTGTCTTGTTATGTTGTTCCTTGTGCATAAATGGCAATTGTTGGAGATTGTTGTTTATCATCATCCCTTCTCCCCCTTCCTTC
TAGTTGTGAAATGATGTTGTTTGTTGACACTTTCTTGCCTGAATGATTTCAAATGTTTCTCTTTTTTATGTAATCTTAAATTTTATGCAAAGGCTTGTTTCATAT
CCTTCATTCTCCATGGAAAATGCCTTCCAAACCAACTTCCCCTTTCAAGATTAAAAGGAAGAACCCTCTTAGAAATTGGATTTTATGTAATTTCGATGGTTTAGA
ATTCAAAATGTGTTGTGGTTATTGAAAATTCAACTTTATTTTGGTTCATAAACTCATAGAATTTTGAATATTAGTTTTGGTTTTTCATAACAATTATTT
Protein sequenceShow/hide protein sequence
MAEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGMPDSPAKDDSTYKNGSVLGKSQPLCDYSGSEALLVRLLANIKNGFAACKLRNREAFGRFDKRG
SAEMYNLQILNNTTESCI