CuGenDBv2

Gene ID	Lsi10G000430
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Nuclear transcription factor Y subunit B-3
Genome location	chr10:696585..697142
RNA-Seq Expression	Lsi10G000430
Synteny	Lsi10G000430
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0060802.1 uncharacterized protein E6C27_scaffold137G00220 [Cucumis melo var. makuwa]

5.9e-73

84.29

Show/hide

Query:  MSMLYLSISKRNSLPIQKFVQ-----HDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDD
        MSMLY SISKR+SLPIQKFVQ      ++EEEEEEEDQKELTF S  LKSSSASAPTT DLLSESECADDNFTTTEESEVEWPYFD R Y AR+P RSDD
Subjt:  MSMLYLSISKRNSLPIQKFVQ-----HDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDD

Query:  GSISDEESLIEIALPTGHYVSHKFDDVD-DEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        GSISDEESLIEIALPTGHYVS KFDDVD DEDEDD  FR+QKLSDFQ     KKNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  GSISDEESLIEIALPTGHYVSHKFDDVD-DEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA

TYK11971.1 uncharacterized protein E5676_scaffold177G001550 [Cucumis melo var. makuwa]

7.7e-73

86.02

Show/hide

Query:  MSMLYLSISKRNSLPIQKFVQHDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDDGSISD
        MSMLY SISKR+SLPIQKFVQ  ++EEEEEEDQKELTF S  LKSSSASAPTT DLLSESECADDNFTTTEESEVEWPYFD R Y AR+P RSDDGSISD
Subjt:  MSMLYLSISKRNSLPIQKFVQHDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDDGSISD

Query:  EESLIEIALPTGHYVSHKFDDVD-DEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        EESLIEIALPTGHYVS KFDDVD DEDEDD  FR+QKLSDFQ     KKNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  EESLIEIALPTGHYVSHKFDDVD-DEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA

XP_008464163.1 PREDICTED: uncharacterized protein LOC103502111 [Cucumis melo]

7.7e-73

86.02

Show/hide

Query:  MSMLYLSISKRNSLPIQKFVQHDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDDGSISD
        MSMLY SISKR+SLPIQKFVQ  ++EEEEEEDQKELTF S  LKSSSASAPTT DLLSESECADDNFTTTEESEVEWPYFD R Y AR+P RSDDGSISD
Subjt:  MSMLYLSISKRNSLPIQKFVQHDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDDGSISD

Query:  EESLIEIALPTGHYVSHKFDDVD-DEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        EESLIEIALPTGHYVS KFDDVD DEDEDD  FR+QKLSDFQ     KKNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  EESLIEIALPTGHYVSHKFDDVD-DEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA

XP_011656887.2 uncharacterized protein LOC105435780 [Cucumis sativus]

4.2e-71

84.32

Show/hide

Query:  MSMLYLSISKRNSLPIQKFVQHDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDDGSISD
        MSMLY SISKRNSLPI+KFVQ ++EEEEEEEDQK+LTF S  LKSSSASAPT  DLLSESECADDNFTTTEESEVEWPYFD R    RNP RSDDGSISD
Subjt:  MSMLYLSISKRNSLPIQKFVQHDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDDGSISD

Query:  EESLIEIALPTGHYVSHKFDDVDDEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        EESLIEIALPTGHYVS KFDDV DEDEDD+SFR+QKL+DFQ     +KNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  EESLIEIALPTGHYVSHKFDDVDDEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA

XP_038902685.1 uncharacterized protein LOC120089322 [Benincasa hispida]

5.2e-77

88.65

Show/hide

Query:  MSMLYLSISKRNSLPIQKFVQHDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDDGSISD
        MSMLY SISKRNSLPIQKFVQ  Q EEEEEEDQK+LTF S  LKSSS SAPTTGDLLSESECADDNFTTTEESEVEWPYFD RSY   NPDRSDDGSISD
Subjt:  MSMLYLSISKRNSLPIQKFVQHDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDDGSISD

Query:  EESLIEIALPTGHYVSHKFDDVDDEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        EESLIEIALPTGHYVSHKFDDVDDEDED MSFR+QKLSDFQ     KKNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  EESLIEIALPTGHYVSHKFDDVDDEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KCP7 Uncharacterized protein

2.3e-70

83.78

Show/hide

Query:  MSMLYLSISKRNSLPIQKFVQHDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDDGSISD
        MSMLY SISKRNSLPI+KFVQ    EEEEEEDQK+LTF S  LKSSSASAPT  DLLSESECADDNFTTTEESEVEWPYFD R    RNP RSDDGSISD
Subjt:  MSMLYLSISKRNSLPIQKFVQHDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDDGSISD

Query:  EESLIEIALPTGHYVSHKFDDVDDEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        EESLIEIALPTGHYVS KFDDV DEDEDD+SFR+QKL+DFQ     +KNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  EESLIEIALPTGHYVSHKFDDVDDEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A1S3CMD0 uncharacterized protein LOC103502111

3.7e-73

86.02

Show/hide

Query:  MSMLYLSISKRNSLPIQKFVQHDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDDGSISD
        MSMLY SISKR+SLPIQKFVQ  ++EEEEEEDQKELTF S  LKSSSASAPTT DLLSESECADDNFTTTEESEVEWPYFD R Y AR+P RSDDGSISD
Subjt:  MSMLYLSISKRNSLPIQKFVQHDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDDGSISD

Query:  EESLIEIALPTGHYVSHKFDDVD-DEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        EESLIEIALPTGHYVS KFDDVD DEDEDD  FR+QKLSDFQ     KKNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  EESLIEIALPTGHYVSHKFDDVD-DEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A5A7UY43 Uncharacterized protein

2.9e-73

84.29

Show/hide

Query:  MSMLYLSISKRNSLPIQKFVQ-----HDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDD
        MSMLY SISKR+SLPIQKFVQ      ++EEEEEEEDQKELTF S  LKSSSASAPTT DLLSESECADDNFTTTEESEVEWPYFD R Y AR+P RSDD
Subjt:  MSMLYLSISKRNSLPIQKFVQ-----HDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDD

Query:  GSISDEESLIEIALPTGHYVSHKFDDVD-DEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        GSISDEESLIEIALPTGHYVS KFDDVD DEDEDD  FR+QKLSDFQ     KKNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  GSISDEESLIEIALPTGHYVSHKFDDVD-DEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A5D3CJH9 Uncharacterized protein

3.7e-73

86.02

Show/hide

Query:  MSMLYLSISKRNSLPIQKFVQHDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDDGSISD
        MSMLY SISKR+SLPIQKFVQ  ++EEEEEEDQKELTF S  LKSSSASAPTT DLLSESECADDNFTTTEESEVEWPYFD R Y AR+P RSDDGSISD
Subjt:  MSMLYLSISKRNSLPIQKFVQHDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDDGSISD

Query:  EESLIEIALPTGHYVSHKFDDVD-DEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        EESLIEIALPTGHYVS KFDDVD DEDEDD  FR+QKLSDFQ     KKNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  EESLIEIALPTGHYVSHKFDDVD-DEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A6J1CG35 uncharacterized protein LOC111011203

2.1e-60

78.65

Show/hide

Query:  MSMLYLSISKRNSL------PIQKFVQHDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSD
        MSMLY +ISKRNSL      PI+KFV     EEEEEE + E++F S Q K SSASAP TGDLLSESECADDNFTTTEESEVEWP+ DR   TA NPDRS 
Subjt:  MSMLYLSISKRNSL------PIQKFVQHDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSD

Query:  DGSISDEESLIEIALPTGHYVSHKF-DDVDDEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        DGSISDEESLIEIALPTGHYVSHKF DD +DEDEDDMSF  QKLSDFQKQ    KNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  DGSISDEESLIEIALPTGHYVSHKF-DDVDDEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G04480.1 unknown protein

3.2e-16

48.42

Show/hide

Query:  DRSDDGSISDEESLIEIALPTGHYVSHKFDDVDDEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        +  DDG+I D+ESLIE++LP+GHY+ H ++        +  +   K+ DF+        L ++L EIND  EE+NLIEIDIS+GSIKYSRFEI+A
Subjt:  DRSDDGSISDEESLIEIALPTGHYVSHKFDDVDDEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA

AT5G35870.1 unknown protein

1.6e-12

44.57

Show/hide

Query:  DDGSISDEESLIEIALPTGHYVSHKFDDVDDEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        DDG+I DEESLIE++LP+GHY+ H +  +    + D    +  + DF+        L+++ AE     E++NLIEIDIS+GSIK SRF+I+A
Subjt:  DDGSISDEESLIEIALPTGHYVSHKFDDVDDEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTATGCTTTATTTATCAATCTCCAAAAGAAATTCACTTCCTATTCAGAAATTCGTACAACATGATCAAGAAGAAGAAGAAGAAGAAGAAGATCAGAAAGAA
CTGACCTTTCTCTCTGGTCAATTGAAATCCTCGTCGGCGTCAGCTCCGACGACCGGAGATTTGCTGTCGGAAAGTGAATGTGCCGATGATAATTTCACGACCACC
GAGGAATCTGAAGTGGAGTGGCCGTATTTTGACCGCCGGTCGTATACAGCGAGAAACCCGGACCGGTCTGATGACGGTTCTATTTCTGACGAGGAAAGTTTGATC
GAGATCGCTCTCCCTACCGGACATTACGTCAGCCATAAGTTCGATGACGTCGACGACGAGGACGAGGACGACATGTCGTTTCGTTTCCAGAAACTGTCGGATTTT
CAAAAACAGCAGCAGATGAAGAAGAATCTTGTGGAGATGTTGGCTGAAATTAACGACATCAATGAGGAGGAGAATTTGATCGAGATCGACATATCGATGGGCTCC
ATTAAATATTCAAGGTTTGAAATTGAAGCTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSMLYLSISKRNSLPIQKFVQHDQEEEEEEEDQKELTFLSGQLKSSSASAPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTARNPDRSDDGSISDEESLI
EIALPTGHYVSHKFDDVDDEDEDDMSFRFQKLSDFQKQQQMKKNLVEMLAEINDINEEENLIEIDISMGSIKYSRFEIEA

Lsi10G000430 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome