CuGenDBv2

Gene ID	Lsi10G000510
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	F-box protein SNE
Genome location	chr10:801765..802223
RNA-Seq Expression	Lsi10G000510
Synteny	Lsi10G000510
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0060791.1 F-box protein SNE [Cucumis melo var. makuwa]

1.1e-77

96.71

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRI GDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV

XP_004140002.1 F-box protein SNE [Cucumis sativus]

1.7e-78

97.37

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRI G+ASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV

XP_016903159.1 PREDICTED: F-box protein SNE [Cucumis melo]

4.2e-77

96.05

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRI GDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV

XP_022947535.1 F-box protein SNE-like [Cucurbita moschata]

5.5e-77

95.39

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEKRRKFLINDNLDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE VCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+SGDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV

XP_038902594.1 F-box protein SNE [Benincasa hispida]

5.4e-80

99.34

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRI GDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAT5 F-box domain-containing protein

8.3e-79

97.37

Show/hide

Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRI G+ASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV

A0A1S4E4K7 F-box protein SNE

2.1e-77

96.05

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRI GDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV

A0A5A7V4V6 F-box protein SNE

5.4e-78

96.71

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV
        SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRI GDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV

A0A6J1G764 F-box protein SNE-like

2.7e-77

95.39

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEKRRKFLINDNLDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE VCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+SGDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV

A0A6J1I140 F-box protein SNE-like

2.7e-77

95.39

Show/hide

Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEKRRKFLINDNLDILIEILKRLDGPSLGVA CVCRLWCTIAR+ESVWE VCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGY

Query:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV
        S++VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+SGDASALSLMFLCNTVNV
Subjt:  SDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

1.6e-10

32.54

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Query:  DILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSP--LPSSVKSVVAALGGYKRLYMVSIRP-------VLSRLGYSDLVRRVWTQDEV
        D++ E+L+R +  +L  A CV R W  +A  E +WE  C R   +       +++VV +LGG++RL+ V IRP       V  + G      R+  +D+V
Subjt:  DILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSP--LPSSVKSVVAALGGYKRLYMVSIRP-------VLSRLGYSDLVRRVWTQDEV

Query:  QLSLSLFCVDYYERLTGSGRISGDAS
        QLSLSLF + +++ +    +  G+ S
Subjt:  QLSLSLFCVDYYERLTGSGRISGDAS

Q9LUB6 F-box protein SNE

2.4e-35

53.9

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Query:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL
        + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE++CFR V SP PS S++SVV+ALGGY+ LY + IRPVL+R 
Subjt:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV
            L + +WT+D++QLSLSL+CV YYERL   G   GDA   SL+FL   VNV
Subjt:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV

Q9STX3 F-box protein GID2

1.7e-12

35.9

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Query:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH T+     + ++SVV ALGG++RL+ + + P LS+       R  + +DE++L+
Subjt:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLS

Query:  LSLFCVDYYERLTGSGR
        LSL  + YYE+++ + R
Subjt:  LSLFCVDYYERLTGSGR

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

1.2e-13

35.9

Show/hide

Query:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH T+     + ++SVV ALGG++RL+ + + P LS+       R  + +DE++L+
Subjt:  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLS

Query:  LSLFCVDYYERLTGSGR
        LSL  + YYE+++ + R
Subjt:  LSLFCVDYYERLTGSGR

AT5G48170.1 F-box family protein

1.7e-36

53.9

Show/hide

Query:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL
        + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE++CFR V SP PS S++SVV+ALGGY+ LY + IRPVL+R 
Subjt:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV
            L + +WT+D++QLSLSL+CV YYERL   G   GDA   SL+FL   VNV
Subjt:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCAGAAGAATCACATACCAGAACCGAATGAGAAGAGGCGGAAGTTCTTAATCAACGACAATCTCGACATTCTGATCGAAATCCTCAAGCGGCTAGACGGACCG
TCGCTCGGCGTCGCAACCTGCGTCTGCCGGCTCTGGTGCACAATCGCTCGAAGTGAATCGGTGTGGGAACAGGTTTGCTTCCGTCACGTAACATCGCCGCTACCG
TCGTCGGTGAAATCGGTGGTGGCCGCCTTGGGAGGGTACAAGCGGTTGTACATGGTTAGCATACGGCCGGTACTGAGTCGACTCGGGTACTCGGACCTGGTGAGG
CGAGTTTGGACTCAGGATGAGGTTCAACTTTCACTTTCTCTGTTTTGTGTAGATTATTACGAGCGACTCACTGGGAGTGGGAGAATCAGCGGCGATGCGTCCGCA
TTGTCCCTCATGTTCCTCTGCAACACCGTCAACGTCTGA

mRNA sequence

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Protein sequence

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MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVR
RVWTQDEVQLSLSLFCVDYYERLTGSGRISGDASALSLMFLCNTVNV

Lsi10G000510 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome