; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G000990 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G000990
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionGlycine-rich RNA-binding protein 3
Genome locationchr10:1564931..1566740
RNA-Seq ExpressionLsi10G000990
SyntenyLsi10G000990
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570903.1 Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]4.4e-4279.84Show/hide
Query:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQ--SSSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSR
        MSN NTL+ L R+ LTNIQTP+LSFR FCSQ  SSSSSAPSSSPSAPNNKLFVAGLSWS+DERSLKDAFSSFGEVTE          VRI+YDKDSGRSR
Subjt:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQ--SSSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSR

Query:  GFGFVNFTNGNDAQCAKDAMDGKA
        GFGFVNFTN +DAQ AKDAMDGKA
Subjt:  GFGFVNFTNGNDAQCAKDAMDGKA

KAG7010748.1 Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]4.4e-4279.84Show/hide
Query:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQ--SSSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSR
        MSN NTL+ L R+ LTNIQTP+LSFR FCSQ  SSSSSAPSSSPSAPNNKLFVAGLSWS+DERSLKDAFSSFGEVTE          VRI+YDKDSGRSR
Subjt:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQ--SSSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSR

Query:  GFGFVNFTNGNDAQCAKDAMDGKA
        GFGFVNFTN +DAQ AKDAMDGKA
Subjt:  GFGFVNFTNGNDAQCAKDAMDGKA

XP_022944150.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata]3.3e-4279.84Show/hide
Query:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQSSS--SSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSR
        MSN N L+LL R+ LTNIQTP+LSFR FCSQSSS  SSAPSSSPSAPNNKLFVAGLSWS+DERSLKDAFSSFGEVTE          VRI+YDKDSGRSR
Subjt:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQSSS--SSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSR

Query:  GFGFVNFTNGNDAQCAKDAMDGKA
        GFGFVNFTN +DAQ AKDAMDGKA
Subjt:  GFGFVNFTNGNDAQCAKDAMDGKA

XP_022986397.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]3.3e-4279.84Show/hide
Query:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQSSS--SSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSR
        MSN N L+LL R+ LTNIQTP+LSFR FCSQSSS  SSAPSSSPSAPNNKLFVAGLSWS+DERSLKDAFSSFGEVTE          VRI+YDKDSGRSR
Subjt:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQSSS--SSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSR

Query:  GFGFVNFTNGNDAQCAKDAMDGKA
        GFGFVNFTN +DAQ AKDAMDGKA
Subjt:  GFGFVNFTNGNDAQCAKDAMDGKA

XP_038902171.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Benincasa hispida]6.7e-4382.11Show/hide
Query:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQ-SSSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRG
        MSN N+LILLGRK LTN QT ILSFRYF SQ +SSSSAPSSSPSAPN++LFVAGLSWSMDERSLKDAFSSFGEVTE          VRI+YDKDSGRSRG
Subjt:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQ-SSSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRG

Query:  FGFVNFTNGNDAQCAKDAMDGKA
        FGFVNFTN NDAQCAKDAMDGKA
Subjt:  FGFVNFTNGNDAQCAKDAMDGKA

TrEMBL top hitse value%identityAlignment
A0A0A0LQB7 RRM domain-containing protein2.0e-4077.05Show/hide
Query:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQSSSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGF
        MSN NT +LL RK LTNIQTP L FR FCSQS+S   P SS  +PNNKLFVAGLSWSMDERSLKDAFSSFGEVTE          VRI+YDKDSGRSRGF
Subjt:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQSSSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGF

Query:  GFVNFTNGNDAQCAKDAMDGKA
        GFVNF NGNDAQCAKDAMDGKA
Subjt:  GFVNFTNGNDAQCAKDAMDGKA

A0A1S3C2R4 glycine-rich RNA-binding protein 3, mitochondrial2.3e-4179.51Show/hide
Query:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQSSSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGF
        MSN NTL+LL RK LTNIQTPIL+FR FCSQ  S+SA SSSPSAP+NKLFVAGLSWSMDERSLKDAFSSFGEVTE          VRI+YDKDSGRSRGF
Subjt:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQSSSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGF

Query:  GFVNFTNGNDAQCAKDAMDGKA
        GFV+F N NDAQCAKDAMDGKA
Subjt:  GFVNFTNGNDAQCAKDAMDGKA

A0A5D3CH06 Glycine-rich RNA-binding protein 32.3e-4179.51Show/hide
Query:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQSSSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGF
        MSN NTL+LL RK LTNIQTPIL+FR FCSQ  S+SA SSSPSAP+NKLFVAGLSWSMDERSLKDAFSSFGEVTE          VRI+YDKDSGRSRGF
Subjt:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQSSSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGF

Query:  GFVNFTNGNDAQCAKDAMDGKA
        GFV+F N NDAQCAKDAMDGKA
Subjt:  GFVNFTNGNDAQCAKDAMDGKA

A0A6J1FYH8 glycine-rich RNA-binding protein 4, mitochondrial-like1.6e-4279.84Show/hide
Query:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQSSS--SSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSR
        MSN N L+LL R+ LTNIQTP+LSFR FCSQSSS  SSAPSSSPSAPNNKLFVAGLSWS+DERSLKDAFSSFGEVTE          VRI+YDKDSGRSR
Subjt:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQSSS--SSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSR

Query:  GFGFVNFTNGNDAQCAKDAMDGKA
        GFGFVNFTN +DAQ AKDAMDGKA
Subjt:  GFGFVNFTNGNDAQCAKDAMDGKA

A0A6J1J7F1 glycine-rich RNA-binding protein 4, mitochondrial-like1.6e-4279.84Show/hide
Query:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQSSS--SSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSR
        MSN N L+LL R+ LTNIQTP+LSFR FCSQSSS  SSAPSSSPSAPNNKLFVAGLSWS+DERSLKDAFSSFGEVTE          VRI+YDKDSGRSR
Subjt:  MSNKNTLILLGRKTLTNIQTPILSFRYFCSQSSS--SSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSR

Query:  GFGFVNFTNGNDAQCAKDAMDGKA
        GFGFVNFTN +DAQ AKDAMDGKA
Subjt:  GFGFVNFTNGNDAQCAKDAMDGKA

SwissProt top hitse value%identityAlignment
P39697 40S ribosomal protein S19, mitochondrial4.6e-1047.37Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGK
        + KL++ GLS   DE SLKDAFSSF  VTE           R++ +K +GRSRG+GFVNF + + A  A  AM+G+
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGK

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial1.1e-1143.42Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGK
        ++KLF+ G+++SMDE SL++AF+ +GEV +           R++ D+++GRSRGFGFV FT+   A  A  A+DG+
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGK

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial1.9e-1146.81Show/hide
Query:  SQSSSSSAPS--SSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGK
        SQSS+    S   S    ++KLFV GLSW  D+ SLK AF+SFGEVTE            ++ D+++GRSRGFGFV+F+  + A  A   MDGK
Subjt:  SQSSSSSAPS--SSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGK

Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial8.4e-1244.74Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGK
        + KLF+ GLSW  D+ SL+DAF+ FG+V +           +++ D+++GRSRGFGFVNF +   A  A   MDGK
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGK

W8E7I1 RNA-binding protein 33.5e-1043.75Show/hide
Query:  SAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGKA
        S+   KLFV GL+++ DER+L+D FSSFG ++E          V ++ D+++ RSRGFGF+ FTN   A  A  AM+G++
Subjt:  SAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGKA

Arabidopsis top hitse value%identityAlignment
AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.8e-2254.24Show/hide
Query:  KNTLILLGRKTLTNIQTPILSFRYFCSQSSSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFV
        KN + LL R+     Q  I S  +F  Q  +SS+ S     P++KLF+ GLSWS+DE+SLKDAFSSFGEV E          VRI YDK SGRSRGFGFV
Subjt:  KNTLILLGRKTLTNIQTPILSFRYFCSQSSSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFV

Query:  NFTNGNDAQCAKDAMDGK
        +F    DA  AKDAMDGK
Subjt:  NFTNGNDAQCAKDAMDGK

AT4G13850.1 glycine-rich RNA-binding protein 25.9e-1344.74Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGK
        + KLF+ GLSW  D+ SL+DAF+ FG+V +           +++ D+++GRSRGFGFVNF +   A  A   MDGK
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGK

AT4G13850.2 glycine-rich RNA-binding protein 25.9e-1344.74Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGK
        + KLF+ GLSW  D+ SL+DAF+ FG+V +           +++ D+++GRSRGFGFVNF +   A  A   MDGK
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGK

AT4G13850.3 glycine-rich RNA-binding protein 25.9e-1344.74Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGK
        + KLF+ GLSW  D+ SL+DAF+ FG+V +           +++ D+++GRSRGFGFVNF +   A  A   MDGK
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGK

AT4G13850.4 glycine-rich RNA-binding protein 25.9e-1344.74Show/hide
Query:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGK
        + KLF+ GLSW  D+ SL+DAF+ FG+V +           +++ D+++GRSRGFGFVNF +   A  A   MDGK
Subjt:  NNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNFTNGNDAQCAKDAMDGK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAACAAGAACACCTTGATACTGCTTGGCAGAAAAACACTCACCAATATCCAAACCCCAATTCTGAGCTTTCGTTACTTCTGTTCTCAATCCTCCTCCTCC
TCGGCTCCCTCTTCTTCTCCTTCTGCACCAAACAATAAGCTTTTCGTTGCAGGGTTGTCTTGGTCGATGGACGAGAGATCATTGAAAGACGCGTTTTCTTCCTTT
GGGGAGGTTACTGAAGATTTGAATGGCTTATATGTTCTCTTGACAGTCAGGATACTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTGAACTTT
ACAAATGGAAATGATGCTCAATGTGCAAAAGATGCGATGGATGGAAAGGCAAGTGTGGAAACCAATAGTATAAAGAACCTCAAGTTAGTATTGTTTAATAATGGC
AGACAAATGCAATATCAAATTTCTTGTTTGTAG
mRNA sequenceShow/hide mRNA sequence
TTCTTGCGTGGATTCTGCCTTTTGGTCTCTACTTCAACATTTCGAGAAGTGGTTGGCTCAGCTGGACTGAAACTGTGAATATCGGTGCTCTGTTGGGGGAGATTC
TGAGTTTAAATCATGGAACAAAAAGTGCCCAGAGTGTTAGTTCTTTGGATTTGTAAATTGGGTTTTTGAGGATTTGTTGCTAGTGAGGATTAGACGGTTGTTAAC
TTTTTGTGTAATTTTCTTTCGATTCTTCTTAATCGTATTGACTTTCAAGAACAATCAGCTCTGTGGTGACGTATTAATCGGTTTAAACGCACATTCTAAAATCAC
ATCAATTGGCAAGCTTTGTAATAGCAAAATTTTAGTTCCCATCGCCGAACTCGATCACAAGCAAGAACAAATTATGAGCAACAAGAACACCTTGATACTGCTTGG
CAGAAAAACACTCACCAATATCCAAACCCCAATTCTGAGCTTTCGTTACTTCTGTTCTCAATCCTCCTCCTCCTCGGCTCCCTCTTCTTCTCCTTCTGCACCAAA
CAATAAGCTTTTCGTTGCAGGGTTGTCTTGGTCGATGGACGAGAGATCATTGAAAGACGCGTTTTCTTCCTTTGGGGAGGTTACTGAAGATTTGAATGGCTTATA
TGTTCTCTTGACAGTCAGGATACTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTGAACTTTACAAATGGAAATGATGCTCAATGTGCAAAAGA
TGCGATGGATGGAAAGGCAAGTGTGGAAACCAATAGTATAAAGAACCTCAAGTTAGTATTGTTTAATAATGGCAGACAAATGCAATATCAAATTTCTTGTTTGTA
G
Protein sequenceShow/hide protein sequence
MSNKNTLILLGRKTLTNIQTPILSFRYFCSQSSSSSAPSSSPSAPNNKLFVAGLSWSMDERSLKDAFSSFGEVTEDLNGLYVLLTVRILYDKDSGRSRGFGFVNF
TNGNDAQCAKDAMDGKASVETNSIKNLKLVLFNNGRQMQYQISCL