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Lsi10G001240 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G001240
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription initiation factor IIF subunit beta
Genome locationchr10:1905396..1907220
RNA-Seq ExpressionLsi10G001240
SyntenyLsi10G001240
Gene Ontology termsGO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0005674 - transcription factor TFIIF complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR003196 - Transcription initiation factor IIF, beta subunit
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily
IPR040450 - TFIIF beta subunit, HTH domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602326.1 General transcription factor IIF subunit 2, partial [Cucurbita argyrosperma subsp. sororia]5.8e-3275Show/hide
Query:  NMRPMPVIDVLSFGAAEKKKVVSKGLETK--------------RLFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC
        +MRPMP +DVLSFGAAEKKKVVSKG E K              RLFERQPYWTSKQLIQET  DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKE+C
Subjt:  NMRPMPVIDVLSFGAAEKKKVVSKGLETK--------------RLFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC

Query:  EETK
        EETK
Subjt:  EETK
XP_008465664.1 PREDICTED: general transcription factor IIF subunit 2 isoform X1 [Cucumis melo]9.9e-3275.96Show/hide
Query:  NMRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC
        +MRPMP +DVLSFGAAEKKKVVSKG ETKR              LFERQPYWTSKQLIQET  DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKES 
Subjt:  NMRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC

Query:  EETK
        EETK
Subjt:  EETK
XP_008465665.1 PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo]9.9e-3275.96Show/hide
Query:  NMRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC
        +MRPMP +DVLSFGAAEKKKVVSKG ETKR              LFERQPYWTSKQLIQET  DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKES 
Subjt:  NMRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC

Query:  EETK
        EETK
Subjt:  EETK
XP_022964851.1 general transcription factor IIF subunit 2-like [Cucurbita moschata]5.8e-3275Show/hide
Query:  NMRPMPVIDVLSFGAAEKKKVVSKGLETK--------------RLFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC
        +MRPMP +DVLSFGAAEKKKVVSKG E K              RLFERQPYWTSKQLIQET  DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKE+C
Subjt:  NMRPMPVIDVLSFGAAEKKKVVSKGLETK--------------RLFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC

Query:  EETK
        EETK
Subjt:  EETK
XP_022990432.1 general transcription factor IIF subunit 2-like [Cucurbita maxima]5.8e-3275Show/hide
Query:  NMRPMPVIDVLSFGAAEKKKVVSKGLETK--------------RLFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC
        +MRPMP +DVLSFGAAEKKKVVSKG E K              RLFERQPYWTSKQLIQET  DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKE+C
Subjt:  NMRPMPVIDVLSFGAAEKKKVVSKGLETK--------------RLFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC

Query:  EETK
        EETK
Subjt:  EETK
TrEMBL top hitse value%identityAlignment
A0A0A0KQP0 TFIIF_beta domain-containing protein2.4e-3174.04Show/hide
Query:  NMRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC
        +MRPMP +DVLSFGAAEKKKVVSKG ETKR              LFERQPYWTSKQLIQET  DQPEQYM +ILKDLCVYN KGV+QGTYELKPEY+ES 
Subjt:  NMRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC

Query:  EETK
        E+TK
Subjt:  EETK
A0A1S3CPB8 Transcription initiation factor IIF subunit beta4.8e-3275.96Show/hide
Query:  NMRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC
        +MRPMP +DVLSFGAAEKKKVVSKG ETKR              LFERQPYWTSKQLIQET  DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKES 
Subjt:  NMRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC

Query:  EETK
        EETK
Subjt:  EETK
A0A1S3CPE2 Transcription initiation factor IIF subunit beta4.8e-3275.96Show/hide
Query:  NMRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC
        +MRPMP +DVLSFGAAEKKKVVSKG ETKR              LFERQPYWTSKQLIQET  DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKES 
Subjt:  NMRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC

Query:  EETK
        EETK
Subjt:  EETK
A0A6J1HK34 Transcription initiation factor IIF subunit beta2.8e-3275Show/hide
Query:  NMRPMPVIDVLSFGAAEKKKVVSKGLETK--------------RLFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC
        +MRPMP +DVLSFGAAEKKKVVSKG E K              RLFERQPYWTSKQLIQET  DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKE+C
Subjt:  NMRPMPVIDVLSFGAAEKKKVVSKGLETK--------------RLFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC

Query:  EETK
        EETK
Subjt:  EETK
A0A6J1JIQ3 Transcription initiation factor IIF subunit beta2.8e-3275Show/hide
Query:  NMRPMPVIDVLSFGAAEKKKVVSKGLETK--------------RLFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC
        +MRPMP +DVLSFGAAEKKKVVSKG E K              RLFERQPYWTSKQLIQET  DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKE+C
Subjt:  NMRPMPVIDVLSFGAAEKKKVVSKGLETK--------------RLFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESC

Query:  EETK
        EETK
Subjt:  EETK
SwissProt top hitse value%identityAlignment
P13984 General transcription factor IIF subunit 21.3e-0542.37Show/hide
Query:  FERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK
        FE+  Y+  K L+  T   QP  Y+ +ILK++ V N+KG+++ T+ELKPEY+    E K
Subjt:  FERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK
Q01750 General transcription factor IIF subunit 21.3e-0540.68Show/hide
Query:  FERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK
        FE+  Y+  K L+  T   QP  Y+ +ILK++ + N+KG+++ T+ELKPEY+    E K
Subjt:  FERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK
Q03123 General transcription factor IIF subunit 24.3e-0642.37Show/hide
Query:  FERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK
        FE+  Y+  K L+  T   QP  Y+ +IL+D+ +YN+KG ++ T+ELKPEY+    E K
Subjt:  FERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK
Q2T9L9 General transcription factor IIF subunit 21.3e-0542.37Show/hide
Query:  FERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK
        FE+  Y+  K L+  T   QP  Y+  ILK++ V N+KG+++ T+ELKPEY+    E K
Subjt:  FERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK
Q8R0A0 General transcription factor IIF subunit 21.3e-0540.68Show/hide
Query:  FERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK
        FE+  Y+  K L+  T   QP  Y+ +ILK++ + N+KG+++ T+ELKPEY+    E K
Subjt:  FERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK
Arabidopsis top hitse value%identityAlignment
AT1G75510.1 Transcription initiation factor IIF, beta subunit1.5e-1748.57Show/hide
Query:  INMRPMP-VIDVLSFGAAEKKKVVS-KGLETKR--------------LFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYK
        ++MRPMP ++ ++S  + EK+K    K  E KR              LFE QP WT KQL+QET  DQP Q++ +IL +LCVYN +G  QGTYELKPEYK
Subjt:  INMRPMP-VIDVLSFGAAEKKKVVS-KGLETKR--------------LFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYK

Query:  ESCEE
        +S E+
Subjt:  ESCEE
AT3G52270.1 Transcription initiation factor IIF, beta subunit7.8e-1949.51Show/hide
Query:  INMRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKES
        ++MRPMP + ++   A EKKK+ ++  E KR              LFERQ  WT + LIQET  DQPEQ++  +LKDLC+YN KG  QGTYELKPEYK++
Subjt:  INMRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKES

Query:  CEE
         +E
Subjt:  CEE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAATAAATATGAGGCCTATGCCAGTGATAGACGTGTTGTCATTTGGAGCTGCTGAGAAGAAGAAAGTAGTGAGCAAGGGATTAGAAACAAAGAGGCTTTTT
GAAAGACAGCCATATTGGACGTCAAAACAATTGATACAAGAGACTGACTCTGACCAACCTGAACAATATATGACGAAAATACTTAAAGACCTTTGTGTCTACAAC
ATCAAAGGTGTTTACCAAGGAACGTATGAGCTGAAGCCAGAATACAAGGAATCATGTGAGGAAACGAAACTGCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACAATAAATATGAGGCCTATGCCAGTGATAGACGTGTTGTCATTTGGAGCTGCTGAGAAGAAGAAAGTAGTGAGCAAGGGATTAGAAACAAAGAGGCTTTTT
GAAAGACAGCCATATTGGACGTCAAAACAATTGATACAAGAGACTGACTCTGACCAACCTGAACAATATATGACGAAAATACTTAAAGACCTTTGTGTCTACAAC
ATCAAAGGTGTTTACCAAGGAACGTATGAGCTGAAGCCAGAATACAAGGAATCATGTGAGGAAACGAAACTGCAATAA
Protein sequenceShow/hide protein sequence
MTINMRPMPVIDVLSFGAAEKKKVVSKGLETKRLFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETKLQ