; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G001470 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G001470
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA-directed RNA polymerase subunit beta''
Genome locationchr10:2381740..2399576
RNA-Seq ExpressionLsi10G001470
SyntenyLsi10G001470
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR007081 - RNA polymerase Rpb1, domain 5
IPR007083 - RNA polymerase Rpb1, domain 4
IPR038120 - RNA polymerase Rpb1, funnel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AXU40565.1 RNA polymerase beta'' subunit [Gomphogyne cissiformis var. cissiformis]3.0e-11299.03Show/hide
Query:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
        ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
Subjt:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG

Query:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
        LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
Subjt:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD

Query:  DIYMGP
        DIYMGP
Subjt:  DIYMGP

YP_009456136.1 RNA polymerase beta'' subunit [Lagenaria siceraria]4.6e-113100Show/hide
Query:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
        ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
Subjt:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG

Query:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
        LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
Subjt:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD

Query:  DIYMGP
        DIYMGP
Subjt:  DIYMGP

YP_009560825.1 RpoC2 [Trichosanthes kirilowii]3.0e-11299.03Show/hide
Query:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
        ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
Subjt:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG

Query:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
        LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
Subjt:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD

Query:  DIYMGP
        DIYMGP
Subjt:  DIYMGP

YP_009751896.1 RNA polymerase beta'' subunit [Cyclanthera pedata]3.0e-11299.03Show/hide
Query:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
        ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
Subjt:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG

Query:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
        LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
Subjt:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD

Query:  DIYMGP
        DIY GP
Subjt:  DIYMGP

YP_009752486.1 RNA polymerase beta'' subunit [Trichosanthes tubiflora]7.8e-11399.03Show/hide
Query:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
        ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
Subjt:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG

Query:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
        LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISVSPGNRMIPERIFIQTLIGRVLAD
Subjt:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD

Query:  DIYMGP
        DIYMGP
Subjt:  DIYMGP

TrEMBL top hitse value%identityAlignment
A0A1P8LFL6 DNA-directed RNA polymerase1.4e-11299.03Show/hide
Query:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
        ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
Subjt:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG

Query:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
        LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
Subjt:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD

Query:  DIYMGP
        DIYMGP
Subjt:  DIYMGP

A0A2I6C070 DNA-directed RNA polymerase subunit beta''2.2e-113100Show/hide
Query:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
        ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
Subjt:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG

Query:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
        LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
Subjt:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD

Query:  DIYMGP
        DIYMGP
Subjt:  DIYMGP

A0A6H0EPT4 DNA-directed RNA polymerase subunit beta''1.4e-11299.03Show/hide
Query:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
        ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
Subjt:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG

Query:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
        LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
Subjt:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD

Query:  DIYMGP
        DIYMGP
Subjt:  DIYMGP

A0A6H0ERC0 DNA-directed RNA polymerase subunit beta''3.8e-11399.03Show/hide
Query:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
        ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
Subjt:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG

Query:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
        LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT+RGISVSPGNRMIPERIFIQTLIGRVLAD
Subjt:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD

Query:  DIYMGP
        DIYMGP
Subjt:  DIYMGP

A0A7G9IT27 DNA-directed RNA polymerase subunit beta''2.2e-113100Show/hide
Query:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
        ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
Subjt:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG

Query:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
        LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
Subjt:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD

Query:  DIYMGP
        DIYMGP
Subjt:  DIYMGP

SwissProt top hitse value%identityAlignment
B1A925 DNA-directed RNA polymerase subunit beta''1.1e-11297.09Show/hide
Query:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
        ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFR+TDPFNPVHIMSFSGARGNASQVHQLVGMRG
Subjt:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG

Query:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
        LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP NR +PERIFIQTLIGRVLAD
Subjt:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD

Query:  DIYMGP
        DIYMGP
Subjt:  DIYMGP

P38550 DNA-directed RNA polymerase subunit beta''1.8e-11297.09Show/hide
Query:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
        ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
Subjt:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG

Query:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
        LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISVSP N M+PERIFIQTLIGRVLAD
Subjt:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD

Query:  DIYMGP
        DIYMGP
Subjt:  DIYMGP

Q3C1G9 DNA-directed RNA polymerase subunit beta''1.8e-11297.09Show/hide
Query:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
        ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
Subjt:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG

Query:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
        LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGT RGISVSP N M+PERIFIQTLIGRVLAD
Subjt:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD

Query:  DIYMGP
        DIYMGP
Subjt:  DIYMGP

Q49L08 DNA-directed RNA polymerase subunit beta''4.8e-11397.57Show/hide
Query:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
        ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
Subjt:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG

Query:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
        LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRG+SVSP N M+PERIFIQTLIGRVLAD
Subjt:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD

Query:  DIYMGP
        DIYMGP
Subjt:  DIYMGP

Q4VZP3 DNA-directed RNA polymerase subunit beta''1.9e-11498.54Show/hide
Query:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
        ATSISLGIDDLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
Subjt:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG

Query:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD
        LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGI VSPGNRMIPERIFIQTLIGRVLAD
Subjt:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGNRMIPERIFIQTLIGRVLAD

Query:  DIYMGP
        DIYMGP
Subjt:  DIYMGP

Arabidopsis top hitse value%identityAlignment
AT3G57660.1 nuclear RNA polymerase A11.5e-0531.93Show/hide
Query:  NPVHIMSFSGARG---NASQVHQLVGMRGLMSDPQGQMID---LP--------------IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRR
        N + +M+ SGA+G   N  Q+   +G + L      +M+    LP              I      GL   EY   C   R+G+VDTAV+TS +GYL R 
Subjt:  NPVHIMSFSGARG---NASQVHQLVGMRGLMSDPQGQMID---LP--------------IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRR

Query:  LVEVVQHIVVRRTDCGTIR
        L++ ++ + V   DC T+R
Subjt:  LVEVVQHIVVRRTDCGTIR

AT4G35800.1 RNA polymerase II large subunit1.4e-0638.33Show/hide
Query:  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR
        ++++   GL+  E+     G R+G++DTAV+TS+ GY+ RRLV+ ++ I+V+    GT+R
Subjt:  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIR

AT5G60040.1 nuclear RNA polymerase C16.8e-0634.92Show/hide
Query:  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGIS
        + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V   +  T+R  S
Subjt:  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGIS

AT5G60040.2 nuclear RNA polymerase C16.8e-0634.92Show/hide
Query:  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGIS
        + ++   GL+ TE+     G R+G+VDTAV+T+  GY++RRL++ ++ ++V   +  T+R  S
Subjt:  IQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGIS

ATCG00170.1 DNA-directed RNA polymerase family protein6.0e-11195.65Show/hide
Query:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG
        ATSISLGIDDLLTIPSKGWLVQDAEQQS+ILEKHHHYGNVHAVEKLRQSIE+WYATSEYLRQEMNPNFRMTDPFNPVH+MSFSGARGNASQVHQLVGMRG
Subjt:  ATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRG

Query:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP--GNRMIPERIFIQTLIGRVL
        LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP   NRM+ ERIFIQTLIGRVL
Subjt:  LMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSP--GNRMIPERIFIQTLIGRVL

Query:  ADDIYMG
        ADDIY+G
Subjt:  ADDIYMG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGTTGATGGAAACTTGTCTGTTGTGAGGTGCATTTGCAGGGCACCTACACATTGGCATTGTTATCTGAAACGTTGGGTAAAGCGGTTTTCCCGTTTAAAAGAATT
TCTTCCTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTTATTTTGGAAAAACATC
ATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGGTATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACT
GACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACA
AATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAA
CATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCCGGAAAT
AGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCTTTCCATTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGTTGATGGAAACTTGTCTGTTGTGAGGTGCATTTGCAGGGCACCTACACATTGGCATTGTTATCTGAAACGTTGGGTAAAGCGGTTTTCCCGTTTAAAAGAATT
TCTTCCTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATCCCTTCTAAGGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTTATTTTGGAAAAACATC
ATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGGTATGGTATGCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACT
GACCCTTTTAATCCAGTCCATATAATGTCTTTTTCGGGAGCTCGAGGAAATGCATCTCAAGTACACCAATTAGTAGGTATGAGAGGATTAATGTCAGATCCACAAGGACA
AATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATATAATTTCTTGCTACGGAGCGCGGAAAGGAGTTGTGGATACTGCTGTACGAA
CATCGGATGCTGGATATCTTACACGCAGACTTGTTGAAGTAGTTCAACACATTGTTGTACGTAGAACCGATTGTGGAACCATCCGAGGGATTTCAGTGAGTCCCGGAAAT
AGGATGATTCCGGAAAGAATTTTTATCCAAACATTAATTGGTCGTGTATTAGCGGACGATATATATATGGGCCCTTTCCATTTTTAA
Protein sequenceShow/hide protein sequence
MEVDGNLSVVRCICRAPTHWHCYLKRWVKRFSRLKEFLPATSISLGIDDLLTIPSKGWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEVWYATSEYLRQEMNPNFRMT
DPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVSPGN
RMIPERIFIQTLIGRVLADDIYMGPFHF