; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G001620 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G001620
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionProtein of unknown function (DUF1218)
Genome locationchr10:2598969..2599776
RNA-Seq ExpressionLsi10G001620
SyntenyLsi10G001620
Gene Ontology termsGO:0009855 - determination of bilateral symmetry (biological process)
GO:0010087 - phloem or xylem histogenesis (biological process)
GO:0010305 - leaf vascular tissue pattern formation (biological process)
GO:0010588 - cotyledon vascular tissue pattern formation (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009606 - Modifying wall lignin-1/2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151872.1 uncharacterized protein LOC101212188 [Cucumis sativus]1.1e-8097.47Show/hide
Query:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT
        MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQ ELEKSPPN+QISIACLIFT
Subjt:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT

Query:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAVGMSMLVIGA+GNNKSRA+CGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
Subjt:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

XP_008455827.1 PREDICTED: uncharacterized protein LOC103495927 [Cucumis melo]1.5e-8096.84Show/hide
Query:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT
        MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQ ELEKSPPN+QISIACL+FT
Subjt:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT

Query:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAVGMSMLVIGA+GNNKSRA+CGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
Subjt:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

XP_022944616.1 uncharacterized protein LOC111449022 [Cucurbita moschata]1.7e-7691.77Show/hide
Query:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT
        MKLVGVL+CLLVVAMDIVAGLLGIEADIAQNKVK+LRLWIFECRDPS QA++LGL AAG+LGLAH+IANLLGGCNCICSQ+ LEKSPPNKQISIACL+FT
Subjt:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT

Query:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAV MSMLVIGALGNNKSRA+CGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
Subjt:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

XP_023512382.1 uncharacterized protein LOC111777151 [Cucurbita pepo subsp. pepo]2.2e-7691.14Show/hide
Query:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT
        MKLVGVL+CLLVVAMDIVAGLLGIEADIAQNKVK+LRLWIFECRDPS QA++LGL AAG+LGLAH+IANLLGGCNCICSQ+ LEKSPPNKQIS+ACL+FT
Subjt:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT

Query:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAV MSMLVIGALGNNKSRA+CGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
Subjt:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

XP_038902419.1 uncharacterized protein LOC120089064 [Benincasa hispida]5.0e-8197.47Show/hide
Query:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT
        M+LVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQ+ELEKSPPNKQ+SIACLIFT
Subjt:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT

Query:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATA+E
Subjt:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

TrEMBL top hitse value%identityAlignment
A0A0A0LR43 Uncharacterized protein5.4e-8197.47Show/hide
Query:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT
        MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQ ELEKSPPN+QISIACLIFT
Subjt:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT

Query:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAVGMSMLVIGA+GNNKSRA+CGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
Subjt:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

A0A1S3C1S7 uncharacterized protein LOC1034959277.1e-8196.84Show/hide
Query:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT
        MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQ ELEKSPPN+QISIACL+FT
Subjt:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT

Query:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAVGMSMLVIGA+GNNKSRA+CGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
Subjt:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

A0A6J1CID0 uncharacterized protein LOC111011214 isoform X23.4e-7589.87Show/hide
Query:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT
        MK+VGVLICLLVVAMDIVAGLLGIEA+IAQNKVK LRLWIFECR+PSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQ+E++KSPPN+Q+S+ACLIFT
Subjt:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT

Query:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAVGMSMLVIG L NNKSRA+CGFTHHHFLSIGGILCFVH LFCVAYYV+ATA E
Subjt:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

A0A6J1FUW3 uncharacterized protein LOC1114490228.1e-7791.77Show/hide
Query:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT
        MKLVGVL+CLLVVAMDIVAGLLGIEADIAQNKVK+LRLWIFECRDPS QA++LGL AAG+LGLAH+IANLLGGCNCICSQ+ LEKSPPNKQISIACL+FT
Subjt:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT

Query:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAV MSMLVIGALGNNKSRA+CGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
Subjt:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

A0A6J1JAZ6 uncharacterized protein LOC1114841455.8e-7590.51Show/hide
Query:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT
        MKLVGVL+CLLVVAMDIVAGLLGIEADIAQNKVK+LRLWIFECRDPS QA++LGL AAG+LGLAH+IANLLGGCNCICSQ+ LEKSPPNKQISIACL+FT
Subjt:  MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFT

Query:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        WIILAV MSMLVIGALGNNKSRA+CGFTHHHFLSIGGILCFVHG F VAYYVTATAAE
Subjt:  WIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G05291.1 Protein of unknown function (DUF1218)6.7e-2339.1Show/hide
Query:  VLICL-LVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNK---QISIACLIFTW
        +++C+ L V +DIVAG +G++A  AQ  VKH +L   EC+ PS+ AF LG+ A   L  AH+ AN++ GC+     Q L   P NK     ++ACL   W
Subjt:  VLICL-LVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNK---QISIACLIFTW

Query:  IILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAA
        ++   G  +L  G   N +SR  C FT++H  SIGG +CF+H +    YY+++  A
Subjt:  IILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAA

AT1G11500.1 Protein of unknown function (DUF1218)2.6e-2740.74Show/hide
Query:  VGVLICLLVVAMDIVAGLLGIEADIAQNKV------KHLRLWIFEC-RDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIAC
        +G L+ ++++  DI A +LGIEA+IAQ+K       +H R     C R PS+ AF  G+ A  LL + H++AN+LGGC  I S+Q+ +++  NK +++A 
Subjt:  VGVLICLLVVAMDIVAGLLGIEADIAQNKV------KHLRLWIFEC-RDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIAC

Query:  LIFTWIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        L+ +WI   V  S L+IG L N+++   C   H  F  IGGI C  HG+   AYYV+A AA+
Subjt:  LIFTWIILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

AT2G32280.1 Protein of unknown function (DUF1218)1.4e-6063.06Show/hide
Query:  KLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFTW
        K+ G+L+CL++V +D+ A +LGI+A++AQN+VKH+RLW+FECR+PS+ AF+LGLGAA +L +AH++ NL+GGC CICSQ E ++S   +QIS+ACL+ TW
Subjt:  KLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFTW

Query:  IILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE
        I+ AVG   +VIG + N+KSR++CGFTHHHFLSIGGILCF+H LFCVAYYV+ATAA+
Subjt:  IILAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE

AT4G21310.1 Protein of unknown function (DUF1218)5.4e-5766.23Show/hide
Query:  VGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFTWII
        VG  IC+L++AMD+ AG+LGIEA+IAQNKVKHL++WIFECRDPS  AFK GL A  LL LAH+ AN LGGC C+ S+Q+LEKS  NKQ+++A LIFTWII
Subjt:  VGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFTWII

Query:  LAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAA
        LA+  SML++G + N++SR  CG +HH  LSIGGILCFVHGLF VAYY++ATA+
Subjt:  LAVGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTTGGTTGGTGTGTTGATTTGTTTGTTGGTGGTAGCCATGGATATTGTGGCTGGCCTTCTTGGGATTGAAGCTGATATTGCACAAAACAAGGTGAAGCAT
CTTCGACTATGGATATTTGAATGTAGAGATCCAAGTGAGCAAGCTTTCAAATTGGGATTAGGAGCAGCAGGGCTTTTGGGATTAGCTCATATTATTGCTAATTTG
CTTGGTGGTTGCAATTGCATTTGCTCTCAACAAGAGCTTGAAAAATCTCCCCCAAATAAGCAAATCTCCATTGCATGCCTCATTTTCACTTGGATAATTCTTGCA
GTGGGAATGTCCATGCTGGTAATTGGGGCATTGGGGAACAACAAATCAAGAGCAACTTGTGGATTCACACACCATCATTTTCTGTCAATTGGAGGGATTTTGTGT
TTTGTTCATGGCTTGTTTTGTGTTGCTTATTACGTTACTGCCACTGCTGCTGAATAA
mRNA sequenceShow/hide mRNA sequence
TCTAAAGAAGCTTTTTACCTAAAAAAAAAAAAAGAAAAGAAAATGATGAACCACTCTGCTTTTAAAAGGCCATAAATAGTTGATTTCCCCCTCTCACCATCCTTT
GCTTTGATTTTCCCTCTCATAATAAAACAAAGTATACATCATGAAGTTGGTTGGTGTGTTGATTTGTTTGTTGGTGGTAGCCATGGATATTGTGGCTGGCCTTCT
TGGGATTGAAGCTGATATTGCACAAAACAAGGTGAAGCATCTTCGACTATGGATATTTGAATGTAGAGATCCAAGTGAGCAAGCTTTCAAATTGGGATTAGGAGC
AGCAGGGCTTTTGGGATTAGCTCATATTATTGCTAATTTGCTTGGTGGTTGCAATTGCATTTGCTCTCAACAAGAGCTTGAAAAATCTCCCCCAAATAAGCAAAT
CTCCATTGCATGCCTCATTTTCACTTGGATAATTCTTGCAGTGGGAATGTCCATGCTGGTAATTGGGGCATTGGGGAACAACAAATCAAGAGCAACTTGTGGATT
CACACACCATCATTTTCTGTCAATTGGAGGGATTTTGTGTTTTGTTCATGGCTTGTTTTGTGTTGCTTATTACGTTACTGCCACTGCTGCTGAATAATGGAAATT
TGGAAATTTTCCTTTTTT
Protein sequenceShow/hide protein sequence
MKLVGVLICLLVVAMDIVAGLLGIEADIAQNKVKHLRLWIFECRDPSEQAFKLGLGAAGLLGLAHIIANLLGGCNCICSQQELEKSPPNKQISIACLIFTWIILA
VGMSMLVIGALGNNKSRATCGFTHHHFLSIGGILCFVHGLFCVAYYVTATAAE