CuGenDBv2

Gene ID	Lsi10G002100
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Transmembrane protein 18
Genome location	chr10:3439823..3440395
RNA-Seq Expression	Lsi10G002100
Synteny	Lsi10G002100
Gene Ontology terms	GO:0009846 - pollen germination (biological process) GO:0009860 - pollen tube growth (biological process) GO:0052543 - callose deposition in cell wall (biological process) GO:0005640 - nuclear outer membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR026721 - Transmembrane protein 18

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7033663.1 Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.9e-36

84.38

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Query:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL
        MEELRSAMEEHMDQM DL+QKLSSELRSGLRPAVDNF+GFFHAIDWKEPWLMGLLGFHGLLLIITIFTRK TNFQMFLFLLAL     A ++ + L
Subjt:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL

XP_008462809.1 PREDICTED: transmembrane protein 18 [Cucumis melo]

7.3e-36

84.38

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Query:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL
        M+ELRSAMEEHMDQM DLIQKLSSELRSGLRPA+DNF+GFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFL AL     A  + K L
Subjt:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL

XP_022949841.1 transmembrane protein 18 [Cucurbita moschata]

1.9e-36

84.38

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Query:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL
        MEELRSAMEEHMDQM DL+QKLSSELRSGLRPAVDNF+GFFHAIDWKEPWLMGLLGFHGLLLIITIFTRK TNFQMFLFLLAL     A ++ + L
Subjt:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL

XP_023543279.1 transmembrane protein 18 [Cucurbita pepo subsp. pepo]

5.6e-36

83.33

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Query:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL
        MEELRSAMEEHMDQM DL+QKLSSELRSGLRPAVDNF+GFFHAIDWKEPWL+GLLGFHGLLLIITIFTRK TNFQMFLFLLAL     A ++ + L
Subjt:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL

XP_038900756.1 transmembrane protein 18 [Benincasa hispida]

8.6e-37

85.42

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Query:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL
        MEELRSAMEEHMDQM DLIQK+SSELRSG+RPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLAL     A ++ + L
Subjt:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LN62 Transmembrane protein 18

4.6e-36

93.98

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Query:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLAL
        M+ELRS MEEHMDQM DLIQKLSSELRSGLRPA+DNF+GFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLAL
Subjt:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLAL

A0A1S3CHQ8 Transmembrane protein 18

3.5e-36

84.38

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Query:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL
        M+ELRSAMEEHMDQM DLIQKLSSELRSGLRPA+DNF+GFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFL AL     A  + K L
Subjt:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL

A0A5A7VF36 Transmembrane protein 18

3.5e-36

84.38

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Query:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL
        M+ELRSAMEEHMDQM DLIQKLSSELRSGLRPA+DNF+GFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFL AL     A  + K L
Subjt:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL

A0A6J1GD63 Transmembrane protein 18

9.3e-37

84.38

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Query:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL
        MEELRSAMEEHMDQM DL+QKLSSELRSGLRPAVDNF+GFFHAIDWKEPWLMGLLGFHGLLLIITIFTRK TNFQMFLFLLAL     A ++ + L
Subjt:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL

A0A6J1ISM9 Transmembrane protein 18

9.3e-37

84.38

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Query:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL
        MEELRSAMEEHMDQM DL+QKLSSELRSGLRPAVDNF+GFFHAIDWKEPWLMGLLGFHGLLLIITIFTRK TNFQMFLFLLAL     A ++ + L
Subjt:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTL

SwissProt top hits

e value

%identity

Alignment

Q3TUD9 Transmembrane protein 18

1.0e-03

52.27

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Query:  DWKEPWLMGLLGFHGLLLIITIFTRKRTNFQM--FLFLLALVSS
        DW EPWL+GLL FH L L++T F+ +R   Q+  FL L+ LV S
Subjt:  DWKEPWLMGLLGFHGLLLIITIFTRKRTNFQM--FLFLLALVSS

Arabidopsis top hits

e value

%identity

Alignment

AT1G34350.1 unknown protein

9.2e-29

66.27

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Query:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLAL
        MEE+RSAME+ +D + DL++KLS ELR+G +PA DNF+GFFHAIDWKEPW+MGL+ FH LLL++T+ +R+  NF MFLFLLAL
Subjt:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLAL

AT1G34350.2 unknown protein

2.1e-28

65.85

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Query:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLA
        MEE+RSAME+ +D + DL++KLS ELR+G +PA DNF+GFFHAIDWKEPW+MGL+ FH LLL++T+ +R+  NF MFLFLLA
Subjt:  MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLA

Sequences

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CDS sequence

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ATGGAGGAGTTGAGATCTGCAATGGAGGAACATATGGACCAAATGGGGGATCTGATTCAGAAACTTTCCTCTGAACTCCGATCTGGTCTCCGTCCCGCCGTCGATAATTT
CGTCGGTTTCTTCCACGCCATTGACTGGAAGGAACCTTGGTTGATGGGGTTATTGGGTTTTCATGGATTGTTGCTGATAATAACTATCTTTACCAGGAAGCGTACCAACT
TCCAGATGTTCTTGTTCCTTCTTGCACTAGTGAGTTCGGGTCTAGCAATTAAGGTTATGAAAACTTTACTAACTCTTGAGCTTAGAGATGAATTCTGA

mRNA sequence

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Protein sequence

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MEELRSAMEEHMDQMGDLIQKLSSELRSGLRPAVDNFVGFFHAIDWKEPWLMGLLGFHGLLLIITIFTRKRTNFQMFLFLLALVSSGLAIKVMKTLLTLELRDEF

Lsi10G002100 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome