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Lsi10G002170 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G002170
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description30S ribosomal protein S5
Genome locationchr10:3534063..3538617
RNA-Seq ExpressionLsi10G002170
SyntenyLsi10G002170
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005763 - mitochondrial small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000851 - Ribosomal protein S5
IPR005324 - Ribosomal protein S5, C-terminal
IPR014721 - Ribosomal protein S5 domain 2-type fold, subgroup
IPR020568 - Ribosomal protein S5 domain 2-type fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066311.1 putative 37S ribosomal protein S5 [Cucumis melo var. makuwa]1.6e-3084.71Show/hide
Query:  HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVEKYLL
        H +    + + VYLWPAST TGM AGKTVQTVLNLAGFKNVKSKVVGSRNPLNT+RALFKALNAIETPKDIQEKFGRTVVEKYLL
Subjt:  HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVEKYLL

XP_004151847.1 probable 37S ribosomal protein S5, mitochondrial [Cucumis sativus]2.7e-3060.94Show/hide
Query:  SYHGLL-----RGPAPACTLKTSSGR----VRWVAPQQ-----HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRA
        +YHG++     +GPA    L+ +  +    + +V   +     H +    + + +YLWPAST TGM AGKTVQTVLNLAGFKNVKSKV+GSRNPLNT+RA
Subjt:  SYHGLL-----RGPAPACTLKTSSGR----VRWVAPQQ-----HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRA

Query:  LFKALNAIETPKDIQEKFGRTVVEKYLL
        LFKALNAIETPKDIQEKFGRTVVEKYLL
Subjt:  LFKALNAIETPKDIQEKFGRTVVEKYLL

XP_008462792.1 PREDICTED: probable 37S ribosomal protein S5, mitochondrial [Cucumis melo]1.6e-3062.5Show/hide
Query:  SYHGLL-----RGPAPACTLKTSSGR----VRWVAPQQ-----HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRA
        +YHG++     +GPA    L+ +  +    + +V   +     H +    + + VYLWPAST TGM AGKTVQTVLNLAGFKNVKSKVVGSRNPLNT+RA
Subjt:  SYHGLL-----RGPAPACTLKTSSGR----VRWVAPQQ-----HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRA

Query:  LFKALNAIETPKDIQEKFGRTVVEKYLL
        LFKALNAIETPKDIQEKFGRTVVEKYLL
Subjt:  LFKALNAIETPKDIQEKFGRTVVEKYLL

XP_022148602.1 uncharacterized protein LOC111017222 [Momordica charantia]1.3e-2961.72Show/hide
Query:  SYHGLL-----RGPAPACTLKTSSGR----VRWVAPQQ-----HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRA
        +YHG++     +GPA    L+ +  +    + +V   +     H +    + + VYLWPAST TGM AGKTVQTVLNLAGFKNVKSKVVGSRNP NTL+A
Subjt:  SYHGLL-----RGPAPACTLKTSSGR----VRWVAPQQ-----HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRA

Query:  LFKALNAIETPKDIQEKFGRTVVEKYLL
        LFKALNAIETPKDIQEKFGRTVVEKYLL
Subjt:  LFKALNAIETPKDIQEKFGRTVVEKYLL

XP_038902106.1 uncharacterized protein LOC120088744 [Benincasa hispida]4.6e-3062.5Show/hide
Query:  SYHGLL-----RGPAPACTLKTSSGR----VRWVAPQQ-----HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRA
        +YHG++     +GPA    L+ +  +    + +V   +     H +    + + VYLWPA T TGM AGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRA
Subjt:  SYHGLL-----RGPAPACTLKTSSGR----VRWVAPQQ-----HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRA

Query:  LFKALNAIETPKDIQEKFGRTVVEKYLL
        LFKALNAIETPKDIQEKFGRTVVEKYLL
Subjt:  LFKALNAIETPKDIQEKFGRTVVEKYLL

TrEMBL top hitse value%identityAlignment
A0A0A0LRA1 Ribosomal_S5_C domain-containing protein3.3e-5876.79Show/hide
Query:  MLLSRHMRNASKIFIMWNAMRSTQLHMQYRRHTRKQRYSTISNFLLSASKVSSLSYHGLLRGPAPACTLKTSSGRVRWVAPQQHILAAGQQPSLVYLWPA
        MLLSRHMRN SKIFIMWN MRSTQLHMQ+RRHTRKQRYSTISN LLSASKV S S HG LRGPAP+           W  P++ I          YLWPA
Subjt:  MLLSRHMRNASKIFIMWNAMRSTQLHMQYRRHTRKQRYSTISNFLLSASKVSSLSYHGLLRGPAPACTLKTSSGRVRWVAPQQHILAAGQQPSLVYLWPA

Query:  STATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVEKYLL
        ST TGM AGKTVQTVLNLAGFKNVKSKV+GSRNPLNT+RALFKALNAIETPKDIQEKFGRTVVEKYLL
Subjt:  STATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVEKYLL

A0A1S3CJC3 probable 37S ribosomal protein S5, mitochondrial7.7e-3162.5Show/hide
Query:  SYHGLL-----RGPAPACTLKTSSGR----VRWVAPQQ-----HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRA
        +YHG++     +GPA    L+ +  +    + +V   +     H +    + + VYLWPAST TGM AGKTVQTVLNLAGFKNVKSKVVGSRNPLNT+RA
Subjt:  SYHGLL-----RGPAPACTLKTSSGR----VRWVAPQQ-----HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRA

Query:  LFKALNAIETPKDIQEKFGRTVVEKYLL
        LFKALNAIETPKDIQEKFGRTVVEKYLL
Subjt:  LFKALNAIETPKDIQEKFGRTVVEKYLL

A0A5A7VKZ9 Putative 37S ribosomal protein S57.7e-3184.71Show/hide
Query:  HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVEKYLL
        H +    + + VYLWPAST TGM AGKTVQTVLNLAGFKNVKSKVVGSRNPLNT+RALFKALNAIETPKDIQEKFGRTVVEKYLL
Subjt:  HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVEKYLL

A0A5D3BRU3 Putative 37S ribosomal protein S57.7e-3162.5Show/hide
Query:  SYHGLL-----RGPAPACTLKTSSGR----VRWVAPQQ-----HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRA
        +YHG++     +GPA    L+ +  +    + +V   +     H +    + + VYLWPAST TGM AGKTVQTVLNLAGFKNVKSKVVGSRNPLNT+RA
Subjt:  SYHGLL-----RGPAPACTLKTSSGR----VRWVAPQQ-----HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRA

Query:  LFKALNAIETPKDIQEKFGRTVVEKYLL
        LFKALNAIETPKDIQEKFGRTVVEKYLL
Subjt:  LFKALNAIETPKDIQEKFGRTVVEKYLL

A0A6J1D5I3 uncharacterized protein LOC1110172226.5e-3061.72Show/hide
Query:  SYHGLL-----RGPAPACTLKTSSGR----VRWVAPQQ-----HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRA
        +YHG++     +GPA    L+ +  +    + +V   +     H +    + + VYLWPAST TGM AGKTVQTVLNLAGFKNVKSKVVGSRNP NTL+A
Subjt:  SYHGLL-----RGPAPACTLKTSSGR----VRWVAPQQ-----HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRA

Query:  LFKALNAIETPKDIQEKFGRTVVEKYLL
        LFKALNAIETPKDIQEKFGRTVVEKYLL
Subjt:  LFKALNAIETPKDIQEKFGRTVVEKYLL

SwissProt top hitse value%identityAlignment
B0RU65 30S ribosomal protein S56.5e-1141.98Show/hide
Query:  HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVE
        H + +G   + VY+ PAS  TG+ AG  ++ VL   G KNV +K VGSRNP+N +RA  K L+ +++P  +  K G+ V E
Subjt:  HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVE

P66586 30S ribosomal protein S56.5e-1141.98Show/hide
Query:  HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVE
        H + +G   + VY+ PAS  TG+ AG  ++ VL   G KNV +K VGSRNP+N +RA  K L+ +++P  +  K G+ V E
Subjt:  HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVE

Q1IFU9 30S ribosomal protein S53.8e-1143.9Show/hide
Query:  QHILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVE
        Q+   A    S VY+ PAS  TG+ AG  ++ VL +AG +NV +K  GS NP+N + A FK L A+++P+ I  K G+TV E
Subjt:  QHILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVE

Q3BWW6 30S ribosomal protein S56.5e-1141.98Show/hide
Query:  HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVE
        H + +G   + VY+ PAS  TG+ AG  ++ VL   G KNV +K VGSRNP+N +RA  K L+ +++P  +  K G+ V E
Subjt:  HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVE

Q4URF6 30S ribosomal protein S56.5e-1141.98Show/hide
Query:  HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVE
        H + +G   + VY+ PAS  TG+ AG  ++ VL   G KNV +K VGSRNP+N +RA  K L+ +++P  +  K G+ V E
Subjt:  HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVE

Arabidopsis top hitse value%identityAlignment
AT1G64880.1 Ribosomal protein S5 family protein1.0e-2765.88Show/hide
Query:  HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVEKYLL
        H +    + + +YLWPA T TGM AG+ V+T+L LAGFKN+KSKV+GSRN  NT++A+ KALNA+ETPKD+QEKFGRTVVEKYLL
Subjt:  HILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFGRTVVEKYLL

AT2G33800.1 Ribosomal protein S5 family protein8.4e-0640Show/hide
Query:  VYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFG
        V L PAS  TG+ AG  V+ VL +AG +N   K +GS N LN  RA   A+  +   +D+ ++ G
Subjt:  VYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKDIQEKFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATAAATGCCATAATTAAGAACAGTTTCCGGCCACGTCCTATTTTGGATCATTACAATATCGTTCAGTGTCGTATTCTGCCGTGCAAGAAAGTTTCTACATCGAA
CTATTTTGTTATTGTTAATGATCATCCTTGTGGGATAGCTTGGGCTATTAGAGATAGACAAGTTTACATTGTTAGTGTGTACATTAATTTGATGCTATTAAGCAGGCACA
TGAGAAATGCTTCCAAAATCTTCATTATGTGGAACGCCATGAGGAGCACACAATTGCACATGCAGTACAGACGGCATACAAGAAAACAAAGGTATTCAACCATTTCTAAT
TTTCTTCTCTCTGCATCAAAAGTTTCCTCGCTCTCTTATCATGGATTGTTGAGGGGTCCTGCCCCCGCCTGCACCTTGAAAACATCCAGTGGACGAGTAAGATGGGTTGC
ACCCCAACAACATATACTGGCTGCTGGACAACAACCATCACTTGTATATCTTTGGCCAGCATCAACTGCCACGGGCATGACAGCAGGGAAAACTGTTCAAACTGTTTTGA
ATCTGGCTGGTTTCAAAAATGTCAAATCTAAGGTTGTTGGCTCAAGAAACCCCCTCAACACTCTGAGGGCTCTCTTCAAAGCTCTGAATGCAATCGAGACTCCGAAGGAT
ATTCAAGAGAAGTTTGGGCGGACTGTTGTCGAGAAGTACTTGCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATAAATGCCATAATTAAGAACAGTTTCCGGCCACGTCCTATTTTGGATCATTACAATATCGTTCAGTGTCGTATTCTGCCGTGCAAGAAAGTTTCTACATCGAA
CTATTTTGTTATTGTTAATGATCATCCTTGTGGGATAGCTTGGGCTATTAGAGATAGACAAGTTTACATTGTTAGTGTGTACATTAATTTGATGCTATTAAGCAGGCACA
TGAGAAATGCTTCCAAAATCTTCATTATGTGGAACGCCATGAGGAGCACACAATTGCACATGCAGTACAGACGGCATACAAGAAAACAAAGGTATTCAACCATTTCTAAT
TTTCTTCTCTCTGCATCAAAAGTTTCCTCGCTCTCTTATCATGGATTGTTGAGGGGTCCTGCCCCCGCCTGCACCTTGAAAACATCCAGTGGACGAGTAAGATGGGTTGC
ACCCCAACAACATATACTGGCTGCTGGACAACAACCATCACTTGTATATCTTTGGCCAGCATCAACTGCCACGGGCATGACAGCAGGGAAAACTGTTCAAACTGTTTTGA
ATCTGGCTGGTTTCAAAAATGTCAAATCTAAGGTTGTTGGCTCAAGAAACCCCCTCAACACTCTGAGGGCTCTCTTCAAAGCTCTGAATGCAATCGAGACTCCGAAGGAT
ATTCAAGAGAAGTTTGGGCGGACTGTTGTCGAGAAGTACTTGCTATAATAGGAAGTTTTCTTTTTCCTTCTTTCCCATACTTTCTCAAGTTGAGTCTTTTTTTCTCCCCT
TTCCTTTTTTTTTTTCCAACTCGAAAGGTGCTGATTCTCAAGTAGATGTACAAAAAGGAATTTTGATATTTAAGAAATCATGGTTGTAACTTCTGTTAAAGTTTTGATCA
TCTCCCTTTTAAAACTCAAGGGCATATCATTTTACAATGAACCTGTAGGACAGATGCTGTTCAAGTAAGATGGTCAGTCTCTTTTTACATCAATAATCAAGACAACATCA
TTTTCAGCACTCCTTCTGATTCTATCCACCTTTTTTTATGAGTATGTAACATTGCATTGTGGATAGGCACTCTAGTTGAACCTTTTTAATCAATTGTTGTAGATCACTTT
CAGTAGAGGCCCTTTTGGATTCCTTGTTTTGTTTTGTTTTTTTTTTAATTCAGCATAGTGAGT
Protein sequenceShow/hide protein sequence
MEINAIIKNSFRPRPILDHYNIVQCRILPCKKVSTSNYFVIVNDHPCGIAWAIRDRQVYIVSVYINLMLLSRHMRNASKIFIMWNAMRSTQLHMQYRRHTRKQRYSTISN
FLLSASKVSSLSYHGLLRGPAPACTLKTSSGRVRWVAPQQHILAAGQQPSLVYLWPASTATGMTAGKTVQTVLNLAGFKNVKSKVVGSRNPLNTLRALFKALNAIETPKD
IQEKFGRTVVEKYLL