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Lsi10G002180 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G002180
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr10:3541506..3542241
RNA-Seq ExpressionLsi10G002180
SyntenyLsi10G002180
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648878.1 hypothetical protein Csa_007793, partial [Cucumis sativus]2.4e-0541.67Show/hide
Query:  REYPNFTLTDRFLLTKIVLHKFGFSIAKRIARPTSNHYSILLSV-----RGVPFCFENMWVQFDDTLPMIEY
        R Y   TL DRFL+T+    KF  + +KR+ RP S+HY+I+LS+        PF FENMW+   D   +++Y
Subjt:  REYPNFTLTDRFLLTKIVLHKFGFSIAKRIARPTSNHYSILLSV-----RGVPFCFENMWVQFDDTLPMIEY
RVW33883.1 hypothetical protein CK203_082947 [Vitis vinifera]7.6e-0442.19Show/hide
Query:  REYPNFTLTDRFLLTKIVLHKFGFSIAKRIARPTSNHYSILLSVRGV-----PFCFENMWVQFD
        R   ++   DRFL+T+  L +F  ++  R+ RPTS+H+ ILL   G+     PF FENMW++FD
Subjt:  REYPNFTLTDRFLLTKIVLHKFGFSIAKRIARPTSNHYSILLSVRGV-----PFCFENMWVQFD
TrEMBL top hitse value%identityAlignment
A0A438DEH5 Uncharacterized protein3.7e-0442.19Show/hide
Query:  REYPNFTLTDRFLLTKIVLHKFGFSIAKRIARPTSNHYSILLSVRGV-----PFCFENMWVQFD
        R   ++   DRFL+T+  L +F  ++  R+ RPTS+H+ ILL   G+     PF FENMW++FD
Subjt:  REYPNFTLTDRFLLTKIVLHKFGFSIAKRIARPTSNHYSILLSVRGV-----PFCFENMWVQFD
A0A438F0G1 LINE-1 retrotransposable element ORF2 protein6.3e-0434.95Show/hide
Query:  KIGSPLSRFKAIGASVRLLSKLQMHWEVLSSFGMTLLTSREYPNFTLTDRFLLTKIVLHKFGFSIAKRIARPTSNHYSILLSVRGV-----PFCFENMWV
        ++   + RF  I   + LL  L +H  VL+  G      R   ++   DRFL+T+  L +F   +  R+ RPTS+H+ ILL   G+     PF FENMW+
Subjt:  KIGSPLSRFKAIGASVRLLSKLQMHWEVLSSFGMTLLTSREYPNFTLTDRFLLTKIVLHKFGFSIAKRIARPTSNHYSILLSVRGV-----PFCFENMWV

Query:  QFD
        + D
Subjt:  QFD
A0A438IPD5 SAM_MT_RSMB_NOP domain-containing protein8.2e-0445.16Show/hide
Query:  REYPNFTLTDRFLLTKIVLHKFGFSIAKRIARPTSNHYSILLSVRGV-----PFCFENMWVQ
        RE  ++   DRFL+T+  L  F   I  R+ RPTS+H+ ILL  RG+     PF FENMW++
Subjt:  REYPNFTLTDRFLLTKIVLHKFGFSIAKRIARPTSNHYSILLSVRGV-----PFCFENMWVQ
A0A6J1E2G6 uncharacterized protein LOC1110254056.3e-0443.28Show/hide
Query:  NFTLTDRFLLTKIVLHKFGFSIAKRIARPTSNHYSILLSVRG-----VPFCFENMWVQFDDTLPMIE
        +F+L D FLLT   + K G  IAKR+ R TS+H+ ILL          PF FENMW+      P +E
Subjt:  NFTLTDRFLLTKIVLHKFGFSIAKRIARPTSNHYSILLSVRG-----VPFCFENMWVQFDDTLPMIE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAAGATAGGGTCACCATTAAGTCGCTTCAAAGCTATAGGCGCATCGGTTAGACTACTCTCGAAGCTACAGATGCATTGGGAGGTATTGTCATCATTTGGA
ATGACTCTTCTCACTTCAAGGGAGTACCCCAATTTCACCCTCACTGACAGATTTTTGCTCACGAAAATTGTCCTACATAAATTTGGTTTCTCTATAGCAAAGAGG
ATTGCAAGACCCACTTCTAACCATTACTCCATTCTTCTTTCCGTTAGGGGTGTTCCCTTTTGTTTTGAGAATATGTGGGTTCAGTTTGATGATACCTTGCCTATG
ATTGAGTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTACAAGATAGGGTCACCATTAAGTCGCTTCAAAGCTATAGGCGCATCGGTTAGACTACTCTCGAAGCTACAGATGCATTGGGAGGTATTGTCATCATTTGGA
ATGACTCTTCTCACTTCAAGGGAGTACCCCAATTTCACCCTCACTGACAGATTTTTGCTCACGAAAATTGTCCTACATAAATTTGGTTTCTCTATAGCAAAGAGG
ATTGCAAGACCCACTTCTAACCATTACTCCATTCTTCTTTCCGTTAGGGGTGTTCCCTTTTGTTTTGAGAATATGTGGGTTCAGTTTGATGATACCTTGCCTATG
ATTGAGTATTAG
Protein sequenceShow/hide protein sequence
MYKIGSPLSRFKAIGASVRLLSKLQMHWEVLSSFGMTLLTSREYPNFTLTDRFLLTKIVLHKFGFSIAKRIARPTSNHYSILLSVRGVPFCFENMWVQFDDTLPM
IEY