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Lsi10G002340 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G002340
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr10:3837872..3838111
RNA-Seq ExpressionLsi10G002340
SyntenyLsi10G002340
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043050.1 uncharacterized protein E6C27_scaffold75G001340 [Cucumis melo var. makuwa]4.5e-2278.48Show/hide
Query:  MSKVRSFRLALIMILMAIPKFAFFADCRMLRSEAEHDGVKEHDVDEKPKSLTPETKGSSSSGDRVFTLASGPSRKGAGH
        M KVRS  +ALIMILMAIP FA FA+ RMLRSEAE DGVKEHDVDEKPK L P+ K SSSSG+RV TLASGPSRKG GH
Subjt:  MSKVRSFRLALIMILMAIPKFAFFADCRMLRSEAEHDGVKEHDVDEKPKSLTPETKGSSSSGDRVFTLASGPSRKGAGH

KAE8652345.1 hypothetical protein Csa_022541, partial [Cucumis sativus]1.0e-2178.75Show/hide
Query:  MSKVRSFRLALIMILMAIPKFAFFADCRMLRSEAEHDGVKEHDVD-EKPKSLTPETKGSSSSGDRVFTLASGPSRKGAGH
        M K+RSF +ALIMILMAIP FA FA+ RMLRSEAE   VKEHDVD EKPK LTP+ K SSSSGDRVFTLASGPSRKG GH
Subjt:  MSKVRSFRLALIMILMAIPKFAFFADCRMLRSEAEHDGVKEHDVD-EKPKSLTPETKGSSSSGDRVFTLASGPSRKGAGH

KAG6604156.1 hypothetical protein SDJN03_04765, partial [Cucurbita argyrosperma subsp. sororia]1.5e-0447.06Show/hide
Query:  MSKVRSFRLALIMILMAIPKFAFFADCRMLRSEA--EHDGVKEHDV--DEKPKSLTPETKGSSSSGDR--VFTLASGPSRKGAGH
        M K+++  L LIM+LMA  +F    DCR LRS +  EH            +  + +PE  GS SSGD    FTLASGPSRKGAGH
Subjt:  MSKVRSFRLALIMILMAIPKFAFFADCRMLRSEA--EHDGVKEHDV--DEKPKSLTPETKGSSSSGDR--VFTLASGPSRKGAGH

TYK01636.1 uncharacterized protein E5676_scaffold38G00040 [Cucumis melo var. makuwa]2.9e-2177.22Show/hide
Query:  MSKVRSFRLALIMILMAIPKFAFFADCRMLRSEAEHDGVKEHDVDEKPKSLTPETKGSSSSGDRVFTLASGPSRKGAGH
        M KV S  +ALIMILMAIP FA FA+ RMLRSEAE DGVKEHDVDEKPK L P+ K SSSSG+RV TLASGPSRKG GH
Subjt:  MSKVRSFRLALIMILMAIPKFAFFADCRMLRSEAEHDGVKEHDVDEKPKSLTPETKGSSSSGDRVFTLASGPSRKGAGH

TrEMBL top hitse value%identityAlignment
A0A5A7TI98 Uncharacterized protein2.2e-2278.48Show/hide
Query:  MSKVRSFRLALIMILMAIPKFAFFADCRMLRSEAEHDGVKEHDVDEKPKSLTPETKGSSSSGDRVFTLASGPSRKGAGH
        M KVRS  +ALIMILMAIP FA FA+ RMLRSEAE DGVKEHDVDEKPK L P+ K SSSSG+RV TLASGPSRKG GH
Subjt:  MSKVRSFRLALIMILMAIPKFAFFADCRMLRSEAEHDGVKEHDVDEKPKSLTPETKGSSSSGDRVFTLASGPSRKGAGH

A0A5D3BTU1 Uncharacterized protein1.4e-2177.22Show/hide
Query:  MSKVRSFRLALIMILMAIPKFAFFADCRMLRSEAEHDGVKEHDVDEKPKSLTPETKGSSSSGDRVFTLASGPSRKGAGH
        M KV S  +ALIMILMAIP FA FA+ RMLRSEAE DGVKEHDVDEKPK L P+ K SSSSG+RV TLASGPSRKG GH
Subjt:  MSKVRSFRLALIMILMAIPKFAFFADCRMLRSEAEHDGVKEHDVDEKPKSLTPETKGSSSSGDRVFTLASGPSRKGAGH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCAAGGTGAGAAGCTTTCGCTTAGCTCTTATTATGATTCTAATGGCTATCCCCAAGTTTGCCTTTTTTGCCGATTGTAGAATGCTCCGATCGGAGGCCGAGCACGA
CGGTGTTAAAGAACACGATGTTGATGAAAAGCCAAAGAGCTTAACACCAGAGACGAAAGGTTCGAGTAGTAGTGGCGACCGAGTTTTTACGTTGGCTTCGGGACCGAGCA
GGAAGGGCGCCGGCCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCAAGGTGAGAAGCTTTCGCTTAGCTCTTATTATGATTCTAATGGCTATCCCCAAGTTTGCCTTTTTTGCCGATTGTAGAATGCTCCGATCGGAGGCCGAGCACGA
CGGTGTTAAAGAACACGATGTTGATGAAAAGCCAAAGAGCTTAACACCAGAGACGAAAGGTTCGAGTAGTAGTGGCGACCGAGTTTTTACGTTGGCTTCGGGACCGAGCA
GGAAGGGCGCCGGCCATTAG
Protein sequenceShow/hide protein sequence
MSKVRSFRLALIMILMAIPKFAFFADCRMLRSEAEHDGVKEHDVDEKPKSLTPETKGSSSSGDRVFTLASGPSRKGAGH