; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G002420 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G002420
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptioncleavage and polyadenylation specificity factor subunit 3-II
Genome locationchr10:3996041..3996883
RNA-Seq ExpressionLsi10G002420
SyntenyLsi10G002420
Gene Ontology termsGO:0010197 - polar nucleus fusion (biological process)
GO:0016180 - snRNA processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR011108 - Zn-dependent metallo-hydrolase, RNA specificity domain
IPR036866 - Ribonuclease Z/Hydroxyacylglutathione hydrolase-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK06483.1 cleavage and polyadenylation specificity factor subunit 3-II [Cucumis melo var. makuwa]1.2e-13888.97Show/hide
Query:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF
        MDLVKFLSPKHVILVHGEKPKMA LKERIHSELGIPCHDPANNETVSISSTLS+KAEASSMFIQSCSTPNFKFLKRNL DKID +LKDLS KA  TS+M 
Subjt:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF

Query:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ
        IR+CSNPHFKHLN+NLDAKFDSSLSCGPELQVSDDRVNEG++VMENGKKTK +HQDELLLLLGEQEHEVRFA+CRPIYFG+LD  HV+D LSRKS+WLSQ
Subjt:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ

Query:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENE-SAMVFCCCSWLVADETLAWKIISILEKHNLSST
        L  KLS+ELSDRNVQNLGEYLQVES TLSICSKENCPYRTTNRIENE SAMVFCCCSWLVADE LAWKIISILEKH+L ST
Subjt:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENE-SAMVFCCCSWLVADETLAWKIISILEKHNLSST

XP_008459147.1 PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II [Cucumis melo]1.2e-13888.97Show/hide
Query:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF
        MDLVKFLSPKHVILVHGEKPKMA LKERIHSELGIPCHDPANNETVSISSTLS+KAEASSMFIQSCSTPNFKFLKRNL DKID +LKDLS KA  TS+M 
Subjt:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF

Query:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ
        IR+CSNPHFKHLN+NLDAKFDSSLSCGPELQVSDDRVNEG++VMENGKKTK +HQDELLLLLGEQEHEVRFA+CRPIYFG+LD  HV+D LSRKS+WLSQ
Subjt:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ

Query:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENE-SAMVFCCCSWLVADETLAWKIISILEKHNLSST
        L  KLS+ELSDRNVQNLGEYLQVES TLSICSKENCPYRTTNRIENE SAMVFCCCSWLVADE LAWKIISILEKH+L ST
Subjt:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENE-SAMVFCCCSWLVADETLAWKIISILEKHNLSST

XP_038901162.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Benincasa hispida]1.1e-14288.93Show/hide
Query:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF
        MDLVKFLSPKHVILVHGEKPKMA LK+RIHSELGIPC+DPANNETVSISSTLSVKAEAS MFIQSCSTPNFKFLKRNLN+K+D NLKDLSCKA GTS +F
Subjt:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF

Query:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ
        IRKCSN HFK+LN+NLD KFDSS SCGPELQVSDDRVNEG++VME GKKTKV+HQDE+LLLLGEQEHEVRFANCRPIYFGNL+ THV+DCLSRKS+WLSQ
Subjt:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ

Query:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENESAMVFCCCSWLVADETLAWKIISILEKHNLSST
        LFSKLSSELSD+NVQNLGEYLQVESFTLSICSKE+CPYRTTNRIENES +VFCCCSWL+ADE LAWKIISILEKHNL ST
Subjt:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENESAMVFCCCSWLVADETLAWKIISILEKHNLSST

XP_038901169.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X2 [Benincasa hispida]1.1e-14288.93Show/hide
Query:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF
        MDLVKFLSPKHVILVHGEKPKMA LK+RIHSELGIPC+DPANNETVSISSTLSVKAEAS MFIQSCSTPNFKFLKRNLN+K+D NLKDLSCKA GTS +F
Subjt:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF

Query:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ
        IRKCSN HFK+LN+NLD KFDSS SCGPELQVSDDRVNEG++VME GKKTKV+HQDE+LLLLGEQEHEVRFANCRPIYFGNL+ THV+DCLSRKS+WLSQ
Subjt:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ

Query:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENESAMVFCCCSWLVADETLAWKIISILEKHNLSST
        LFSKLSSELSD+NVQNLGEYLQVESFTLSICSKE+CPYRTTNRIENES +VFCCCSWL+ADE LAWKIISILEKHNL ST
Subjt:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENESAMVFCCCSWLVADETLAWKIISILEKHNLSST

XP_038901174.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X6 [Benincasa hispida]1.1e-14288.93Show/hide
Query:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF
        MDLVKFLSPKHVILVHGEKPKMA LK+RIHSELGIPC+DPANNETVSISSTLSVKAEAS MFIQSCSTPNFKFLKRNLN+K+D NLKDLSCKA GTS +F
Subjt:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF

Query:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ
        IRKCSN HFK+LN+NLD KFDSS SCGPELQVSDDRVNEG++VME GKKTKV+HQDE+LLLLGEQEHEVRFANCRPIYFGNL+ THV+DCLSRKS+WLSQ
Subjt:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ

Query:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENESAMVFCCCSWLVADETLAWKIISILEKHNLSST
        LFSKLSSELSD+NVQNLGEYLQVESFTLSICSKE+CPYRTTNRIENES +VFCCCSWL+ADE LAWKIISILEKHNL ST
Subjt:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENESAMVFCCCSWLVADETLAWKIISILEKHNLSST

TrEMBL top hitse value%identityAlignment
A0A1S3C9L2 cleavage and polyadenylation specificity factor subunit 3-II5.9e-13988.97Show/hide
Query:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF
        MDLVKFLSPKHVILVHGEKPKMA LKERIHSELGIPCHDPANNETVSISSTLS+KAEASSMFIQSCSTPNFKFLKRNL DKID +LKDLS KA  TS+M 
Subjt:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF

Query:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ
        IR+CSNPHFKHLN+NLDAKFDSSLSCGPELQVSDDRVNEG++VMENGKKTK +HQDELLLLLGEQEHEVRFA+CRPIYFG+LD  HV+D LSRKS+WLSQ
Subjt:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ

Query:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENE-SAMVFCCCSWLVADETLAWKIISILEKHNLSST
        L  KLS+ELSDRNVQNLGEYLQVES TLSICSKENCPYRTTNRIENE SAMVFCCCSWLVADE LAWKIISILEKH+L ST
Subjt:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENE-SAMVFCCCSWLVADETLAWKIISILEKHNLSST

A0A5A7TJQ1 Cleavage and polyadenylation specificity factor subunit 3-II1.3e-13888.97Show/hide
Query:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF
        MDLVKFLSPKHVILVHGEKPKMA LKERIHSELGIPCHDPANNETVSISSTLS+KAEASSMFIQSCSTPNFKFLKRNL DKID +LKDLS KA  TS+M 
Subjt:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF

Query:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ
        IR+CSNPHFKHLN+NLDAKFDSSLSCGPELQVSDDRVNEG++VMENGKKTK +HQDELLLLLGEQEHEVRFA+CRPIYFG+LD  HV D LSRKS+WLSQ
Subjt:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ

Query:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENES-AMVFCCCSWLVADETLAWKIISILEKHNLSST
        L  KLS+ELSDRNVQNLGEYLQVES TLSICSKENCPYRTTNRIENES AMVFCCCSWLVADE LAWKIISILEKH+L ST
Subjt:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENES-AMVFCCCSWLVADETLAWKIISILEKHNLSST

A0A5D3C3J3 Cleavage and polyadenylation specificity factor subunit 3-II5.9e-13988.97Show/hide
Query:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF
        MDLVKFLSPKHVILVHGEKPKMA LKERIHSELGIPCHDPANNETVSISSTLS+KAEASSMFIQSCSTPNFKFLKRNL DKID +LKDLS KA  TS+M 
Subjt:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF

Query:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ
        IR+CSNPHFKHLN+NLDAKFDSSLSCGPELQVSDDRVNEG++VMENGKKTK +HQDELLLLLGEQEHEVRFA+CRPIYFG+LD  HV+D LSRKS+WLSQ
Subjt:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ

Query:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENE-SAMVFCCCSWLVADETLAWKIISILEKHNLSST
        L  KLS+ELSDRNVQNLGEYLQVES TLSICSKENCPYRTTNRIENE SAMVFCCCSWLVADE LAWKIISILEKH+L ST
Subjt:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENE-SAMVFCCCSWLVADETLAWKIISILEKHNLSST

A0A6J1FTR8 cleavage and polyadenylation specificity factor subunit 3-II isoform X21.2e-13687.5Show/hide
Query:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF
        MDLVKFLSPKHVILVHGEKPKM  LKERIHSELGIPCHDPANNETVSISSTLS+KAE+SSMFIQSCSTPNFKFLKRNLNDKI+S  K+LS K  GTSSMF
Subjt:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF

Query:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ
         R+ SNPH KHLN+NLD KFDSSLSCGPEL+VSDDRVNEG++VMENGKKTKVVHQDELLLLLGEQEHEVRFANC PIYFG+LD THV+DC+SRKS+WLSQ
Subjt:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ

Query:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENESAMVFCCCSWLVADETLAWKIISILEKHNLSST
        L SKLSSELSDRNVQN GEYLQVESFTLSICSKE+CPYRTTNRIENESA  F CCSWLVADE LAW+IISILEKH+LSST
Subjt:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENESAMVFCCCSWLVADETLAWKIISILEKHNLSST

Q6E435 ACT11D09.91.5e-13788.61Show/hide
Query:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF
        MDLVKFLSPKHVILVHGEKPKMA LKERIHSELGIPCHDPANNETVSISSTLS+KAEASSMFIQSCSTPNFKFLKRNL DKID +LKDLS KA  TS+M 
Subjt:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF

Query:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ
        IR+CSNPHFKHLN+NLDAKFDSSLS GPELQVSDDRVNEG++VMENGKKTK +HQDELLLLLGEQEHEVRFA+CRPIYFG+LD  HV+D LSRKS+WLSQ
Subjt:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ

Query:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENES-AMVFCCCSWLVADETLAWKIISILEKHNLSST
        L  KLS+ELSDRNVQNLGEYLQVES TLSICSKENCPYRTTNRIENES AMVFCCCSWLVADE LAWKIISILEKH+L ST
Subjt:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENES-AMVFCCCSWLVADETLAWKIISILEKHNLSST

SwissProt top hitse value%identityAlignment
Q503E1 Integrator complex subunit 115.7e-0642.37Show/hide
Query:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEAS
        M L++   P++++LVHGE  KM  LK++I  E  I C  PAN ET +I +  SV  + S
Subjt:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEAS

Q54YL3 Integrator complex subunit 11 homolog8.9e-0730.08Show/hide
Query:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQS-----------------CSTPNFKFLKRNLNDKID
        + L+K  +P++VILVHGEK KM  L ++I  E+G+ C+ PAN  T+ I +  S+  + S   ++                   +  N   L  N N+  +
Subjt:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQS-----------------CSTPNFKFLKRNLNDKID

Query:  SNLKDLSCKAEGTSSMFIRKCSN
        ++LK +  K   TS++FI   +N
Subjt:  SNLKDLSCKAEGTSSMFIRKCSN

Q5NVE6 Integrator complex subunit 119.8e-0646.3Show/hide
Query:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSV
        M LV    P+ V+LVHGE  KM  LK++I  EL + C+ PAN ETV++ ++ S+
Subjt:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSV

Q5ZIH0 Integrator complex subunit 119.8e-0640.68Show/hide
Query:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEAS
        M L++   P++V+LVHGE  KM  LK++I  E  + C+ PAN ET +I +  S+  + S
Subjt:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEAS

Q8GUU3 Cleavage and polyadenylation specificity factor subunit 3-II2.5e-4137.73Show/hide
Query:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF
        MDL KFLSPK+V+LVHGEKP M  LKE+I SEL IPC  PAN ETVS +ST  +KA AS MF++SCS PNFKF                           
Subjt:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF

Query:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ
                                S   +L+V+D R  +GV+V+E  KK K+VHQDE+  +L E+ H V  A+C P+          VD        + Q
Subjt:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ

Query:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENESAMVFCCCSWLVADETLAWKIISILE
        L +K+   +S   +      LQV SF  S+C K+ C +R+++   + S  VF CC+W +AD  L W+II+ ++
Subjt:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENESAMVFCCCSWLVADETLAWKIISILE

Arabidopsis top hitse value%identityAlignment
AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II1.8e-4237.73Show/hide
Query:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF
        MDL KFLSPK+V+LVHGEKP M  LKE+I SEL IPC  PAN ETVS +ST  +KA AS MF++SCS PNFKF                           
Subjt:  MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMF

Query:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ
                                S   +L+V+D R  +GV+V+E  KK K+VHQDE+  +L E+ H V  A+C P+          VD        + Q
Subjt:  IRKCSNPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQ

Query:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENESAMVFCCCSWLVADETLAWKIISILE
        L +K+   +S   +      LQV SF  S+C K+ C +R+++   + S  VF CC+W +AD  L W+II+ ++
Subjt:  LFSKLSSELSDRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENESAMVFCCCSWLVADETLAWKIISILE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTTGTGAAATTCCTTAGTCCCAAGCATGTGATACTTGTACATGGAGAGAAACCTAAAATGGCTGCTTTAAAGGAGAGGATTCATTCTGAACTGGGAATC
CCATGTCATGATCCTGCAAATAATGAAACCGTATCCATTTCTTCAACTCTTTCTGTCAAAGCAGAAGCCTCAAGCATGTTTATTCAGAGTTGTTCCACTCCTAAT
TTCAAGTTCTTGAAAAGAAACTTGAATGATAAGATTGATTCCAATTTAAAAGATTTAAGTTGCAAAGCAGAAGGAACTTCAAGCATGTTTATACGCAAATGCTCA
AATCCCCATTTCAAGCATTTGAATAAAAATTTGGACGCCAAGTTTGATTCTAGTTTAAGTTGTGGTCCAGAGCTACAGGTAAGTGATGATAGAGTGAATGAAGGG
GTCATGGTGATGGAAAATGGTAAAAAAACAAAGGTGGTACACCAGGATGAACTATTGCTACTCTTGGGAGAACAAGAGCATGAGGTTAGGTTTGCTAATTGTAGA
CCCATATATTTTGGAAACTTAGATGTGACCCATGTTGTGGATTGCTTATCTAGAAAATCTGTATGGCTTTCCCAGCTATTTTCGAAGCTTTCAAGTGAACTTTCA
GACAGGAATGTTCAAAATCTTGGGGAGTATCTTCAAGTTGAATCATTTACACTGTCCATTTGCTCAAAAGAAAATTGCCCTTACAGAACTACAAATAGAATTGAA
AATGAATCTGCTATGGTATTCTGTTGCTGTAGTTGGCTAGTTGCAGATGAAACCCTTGCATGGAAAATCATTTCCATCTTGGAGAAGCATAATCTCAGTTCAACA
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCTTGTGAAATTCCTTAGTCCCAAGCATGTGATACTTGTACATGGAGAGAAACCTAAAATGGCTGCTTTAAAGGAGAGGATTCATTCTGAACTGGGAATC
CCATGTCATGATCCTGCAAATAATGAAACCGTATCCATTTCTTCAACTCTTTCTGTCAAAGCAGAAGCCTCAAGCATGTTTATTCAGAGTTGTTCCACTCCTAAT
TTCAAGTTCTTGAAAAGAAACTTGAATGATAAGATTGATTCCAATTTAAAAGATTTAAGTTGCAAAGCAGAAGGAACTTCAAGCATGTTTATACGCAAATGCTCA
AATCCCCATTTCAAGCATTTGAATAAAAATTTGGACGCCAAGTTTGATTCTAGTTTAAGTTGTGGTCCAGAGCTACAGGTAAGTGATGATAGAGTGAATGAAGGG
GTCATGGTGATGGAAAATGGTAAAAAAACAAAGGTGGTACACCAGGATGAACTATTGCTACTCTTGGGAGAACAAGAGCATGAGGTTAGGTTTGCTAATTGTAGA
CCCATATATTTTGGAAACTTAGATGTGACCCATGTTGTGGATTGCTTATCTAGAAAATCTGTATGGCTTTCCCAGCTATTTTCGAAGCTTTCAAGTGAACTTTCA
GACAGGAATGTTCAAAATCTTGGGGAGTATCTTCAAGTTGAATCATTTACACTGTCCATTTGCTCAAAAGAAAATTGCCCTTACAGAACTACAAATAGAATTGAA
AATGAATCTGCTATGGTATTCTGTTGCTGTAGTTGGCTAGTTGCAGATGAAACCCTTGCATGGAAAATCATTTCCATCTTGGAGAAGCATAATCTCAGTTCAACA
TAA
Protein sequenceShow/hide protein sequence
MDLVKFLSPKHVILVHGEKPKMAALKERIHSELGIPCHDPANNETVSISSTLSVKAEASSMFIQSCSTPNFKFLKRNLNDKIDSNLKDLSCKAEGTSSMFIRKCS
NPHFKHLNKNLDAKFDSSLSCGPELQVSDDRVNEGVMVMENGKKTKVVHQDELLLLLGEQEHEVRFANCRPIYFGNLDVTHVVDCLSRKSVWLSQLFSKLSSELS
DRNVQNLGEYLQVESFTLSICSKENCPYRTTNRIENESAMVFCCCSWLVADETLAWKIISILEKHNLSST