; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G002580 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G002580
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionbinding partner of ACD11 1-like
Genome locationchr10:4191090..4193521
RNA-Seq ExpressionLsi10G002580
SyntenyLsi10G002580
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042981.1 binding partner of ACD11 1-like isoform X1 [Cucumis melo var. makuwa]1.0e-11292.46Show/hide
Query:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD
        MATRTVRVTNVSLSATEKDLRDFFSFSGEIE+VEMR DNERSQ+ FVTFKDPKGAETSILLSGATIVDQPV+I+SAPDYNLPAV AS PVAVPVSTPA D
Subjt:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD

Query:  NTTS-GTSGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSTAG
        NTTS  T+ GSAIQK EDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVS AG
Subjt:  NTTS-GTSGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSTAG

Query:  SAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLA-EDQGKHVGNSS
        SA+M NRYVLTGASWV+QTFQRVAKAAVDVSQKTKEKVLA EDQGKHVGNSS
Subjt:  SAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLA-EDQGKHVGNSS

XP_004148092.1 binding partner of ACD11 1 [Cucumis sativus]1.3e-11292.49Show/hide
Query:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD
        MATRTVRVTNVSLSATEKDLRDFFSFSGEIE+VEMR DNERSQ+ FVTFKD KGAETSILLSGATIVDQPV+I+SAPDYNLPAV AS PVAVPVSTPA D
Subjt:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD

Query:  NTTSGT--SGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSTA
        NTTS T  + GSA+QKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVS A
Subjt:  NTTSGT--SGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSTA

Query:  GSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLA-EDQGKHVGNSS
        GSAIMTNRYVLTGASWV+QTFQRVAKAAVDVSQKTKEKVLA EDQGKHVGNSS
Subjt:  GSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLA-EDQGKHVGNSS

XP_023512142.1 binding partner of ACD11 1-like isoform X2 [Cucurbita pepo subsp. pepo]1.6e-10286.45Show/hide
Query:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD
        MA RTVRVTNVSL ATEK+LR+FFSFSGEIE+VEMRKDNE+ QV FVTFKDPKGAETSILLSGATIVDQP++I SAPDYNLPAV ASDP A   S PAT+
Subjt:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD

Query:  NT---TSGTSG--GSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAV
        NT   T+GT+G  GSA+QKAEDVVSSMLAKGF LGKDALN+AKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAV
Subjt:  NT---TSGTSG--GSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAV

Query:  STAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAED-QGKH
        + AGSAIMTNRYV TGASWV+QTFQRVAKAAVDVSQKTKEK+LAED QGKH
Subjt:  STAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAED-QGKH

XP_038900617.1 binding partner of ACD11 1-like isoform X1 [Benincasa hispida]1.1e-11493.23Show/hide
Query:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD
        MA RTVRVTNVSLS TEKDLRDFFSFSGEIE+VEMRKD ERSQ+ FVTFKDPKGAETSILLSGATIVDQPV+IASAPDYNLPAV AS PVA+PVSTPATD
Subjt:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD

Query:  NTTSGTS-GGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSTAG
        NT SGTS  GSA+QKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVS AG
Subjt:  NTTSGTS-GGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSTAG

Query:  SAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAEDQGKHVGNSS
        SAIMTNRYVLTGASWV+QTFQRVAKAAVDVSQKTKEKVL EDQGKHVGNSS
Subjt:  SAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAEDQGKHVGNSS

XP_038900618.1 binding partner of ACD11 1-like isoform X2 [Benincasa hispida]7.1e-11493.55Show/hide
Query:  RTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTT
        RTVRVTNVSLS TEKDLRDFFSFSGEIE+VEMRKD ERSQ+ FVTFKDPKGAETSILLSGATIVDQPV+IASAPDYNLPAV AS PVA+PVSTPATDNT 
Subjt:  RTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTT

Query:  SGTS-GGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSTAGSAI
        SGTS  GSA+QKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVS AGSAI
Subjt:  SGTS-GGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSTAGSAI

Query:  MTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAEDQGKHVGNSS
        MTNRYVLTGASWV+QTFQRVAKAAVDVSQKTKEKVL EDQGKHVGNSS
Subjt:  MTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAEDQGKHVGNSS

TrEMBL top hitse value%identityAlignment
A0A0A0LRG1 RRM domain-containing protein6.5e-11392.49Show/hide
Query:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD
        MATRTVRVTNVSLSATEKDLRDFFSFSGEIE+VEMR DNERSQ+ FVTFKD KGAETSILLSGATIVDQPV+I+SAPDYNLPAV AS PVAVPVSTPA D
Subjt:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD

Query:  NTTSGT--SGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSTA
        NTTS T  + GSA+QKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVS A
Subjt:  NTTSGT--SGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSTA

Query:  GSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLA-EDQGKHVGNSS
        GSAIMTNRYVLTGASWV+QTFQRVAKAAVDVSQKTKEKVLA EDQGKHVGNSS
Subjt:  GSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLA-EDQGKHVGNSS

A0A1S4E2B3 binding partner of ACD11 1-like isoform X11.3e-10091.7Show/hide
Query:  FSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTS-GTSGGSAIQKAEDVVSSM
        FSFSGEIE+VEMR DNERSQ+ FVTFKDPKGAETSILLSGATIVDQPV+I+SAPDYNLPAV AS PVAVPVSTPA DNTTS  T+ GSAIQK EDVVSSM
Subjt:  FSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTS-GTSGGSAIQKAEDVVSSM

Query:  LAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSTAGSAIMTNRYVLTGASWVTQTFQRV
        LAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVS AGSA+M NRYVLTGASWV+QTFQRV
Subjt:  LAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSTAGSAIMTNRYVLTGASWVTQTFQRV

Query:  AKAAVDVSQKTKEKVLA-EDQGKHVGNSS
        AKAAVDVSQKTKEKVLA EDQGKHVGNSS
Subjt:  AKAAVDVSQKTKEKVLA-EDQGKHVGNSS

A0A5A7TN24 Binding partner of ACD11 1-like isoform X15.0e-11392.46Show/hide
Query:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD
        MATRTVRVTNVSLSATEKDLRDFFSFSGEIE+VEMR DNERSQ+ FVTFKDPKGAETSILLSGATIVDQPV+I+SAPDYNLPAV AS PVAVPVSTPA D
Subjt:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD

Query:  NTTS-GTSGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSTAG
        NTTS  T+ GSAIQK EDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVS AG
Subjt:  NTTS-GTSGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSTAG

Query:  SAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLA-EDQGKHVGNSS
        SA+M NRYVLTGASWV+QTFQRVAKAAVDVSQKTKEKVLA EDQGKHVGNSS
Subjt:  SAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLA-EDQGKHVGNSS

A0A6J1FT10 binding partner of ACD11 1-like isoform X25.7e-10183.66Show/hide
Query:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD
        MA RTVRVTNVSL ATEK+LR+FFSFSGEIE+VEMRKDNE+ QV FVTFKDPKGAETSILLSGATIVDQP++I SAPDYNLPAV ASDP A   S PAT+
Subjt:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD

Query:  NT---------TSGTSG--GSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSE
        NT         T+GT+G  GSA+QKAEDVVSSMLAKGF LGKDALN+AKSFDERH+LTSTAS KVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSE
Subjt:  NT---------TSGTSG--GSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSE

Query:  KTKAAVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAED-QGKH
        KTKAAV+ AGSAIMTNRYV TGASWV+QTFQRVAKAAVDVSQKTKEK+LAED QGKH
Subjt:  KTKAAVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAED-QGKH

A0A6J1JGG3 binding partner of ACD11 1-like isoform X24.4e-10184.65Show/hide
Query:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD
        MA RTVRVTNVSL ATEK+LR+FFSFSGEIE+VEMRKDNE+ QV FVTFKDPKGAETSILLSGATIVDQP++I SAPDYNLPAV ASDP A   S PA +
Subjt:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD

Query:  NT------TSGTSG--GSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTK
        NT      T+GT+G  GSA+QKAEDVVSSMLAKGF LGKDALN+AKSFDERHQLT TASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTK
Subjt:  NT------TSGTSG--GSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTK

Query:  AAVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAED-QGKH
        AAV+ AGSAIMTNRYV TGASWV+QTFQRVAKAAVDVSQKTKEK+LAED QGKH
Subjt:  AAVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAED-QGKH

SwissProt top hitse value%identityAlignment
P87216 Protein vip11.4e-0828.86Show/hide
Query:  VRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTSG
        V VTN+S   TEK + DFFSF G++  +   K  E +Q   + F+ P   +T++LL  A +    + I S                      A   T  G
Subjt:  VRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTSG

Query:  TSGGSAIQKAED-----VVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTV-VNEKVREMDEKFQVSEK---TKAAVS
         +GG    + ED     ++S +L++G+ L    L K+   D+ + ++S     + S      LS   SV     V EK  E+D KF +S+K   T + VS
Subjt:  TSGGSAIQKAED-----VVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTV-VNEKVREMDEKFQVSEK---TKAAVS

Query:  T
        T
Subjt:  T

Q9LFD5 Binding partner of ACD11 11.1e-5955.33Show/hide
Query:  RTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTT
        R+V+V N+S  ATE D+++FFSFSGE+E +++ + NE S   +VTFK+ +GAET++LLSGA+I DQ V I  AP+Y+ PA             P  +  +
Subjt:  RTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTT

Query:  SGTSGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKA-------AVS
        SG    S +QKAEDVVSSMLAKGF LGKDA+ KAK+FDE+H  TSTA++ VASLDQKIGLS+K++ GT++VNEK++ +D+ FQV+E+TK+        VS
Subjt:  SGTSGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKA-------AVS

Query:  TAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAE
        +AGSA+M NRYVLTG SW    F RVA+AA +V QKTKEKV AE
Subjt:  TAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAE

Arabidopsis top hitse value%identityAlignment
AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.7e-7059.92Show/hide
Query:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD
        M   TV+V+NVSL AT++DL++FFSFSG+I Y+E + + ER+++ +VTFKD +GAET++LLSGATIVD  V ++ APDY L       P A+  S    D
Subjt:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD

Query:  NTTSGTSGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAA------
        +  S  +G S ++KAEDVVSSMLAKGF LGKDA+ KAKS DE+HQLTSTAS+KVAS D+KIG ++KI+ GT VV EKVRE+D+K+QVSEKTK+A      
Subjt:  NTTSGTSGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAA------

Query:  -VSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKV-LAEDQGK
         VS AGSAIM NRYVLTGA+WVT  F +VAKAA +V QK KEKV +AE++ K
Subjt:  -VSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKV-LAEDQGK

AT5G16840.1 binding partner of acd11 17.5e-6155.33Show/hide
Query:  RTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTT
        R+V+V N+S  ATE D+++FFSFSGE+E +++ + NE S   +VTFK+ +GAET++LLSGA+I DQ V I  AP+Y+ PA             P  +  +
Subjt:  RTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTT

Query:  SGTSGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKA-------AVS
        SG    S +QKAEDVVSSMLAKGF LGKDA+ KAK+FDE+H  TSTA++ VASLDQKIGLS+K++ GT++VNEK++ +D+ FQV+E+TK+        VS
Subjt:  SGTSGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKA-------AVS

Query:  TAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAE
        +AGSA+M NRYVLTG SW    F RVA+AA +V QKTKEKV AE
Subjt:  TAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAE

AT5G16840.2 binding partner of acd11 13.0e-6255.33Show/hide
Query:  RTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTT
        R+V+V N+S  ATE D+++FFSFSGE+E ++++  NE S   +VTFK+ +GAET++LLSGA+I DQ V I  AP+Y+ PA             P  +  +
Subjt:  RTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTT

Query:  SGTSGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKA-------AVS
        SG    S +QKAEDVVSSMLAKGF LGKDA+ KAK+FDE+H  TSTA++ VASLDQKIGLS+K++ GT++VNEK++ +D+ FQV+E+TK+        VS
Subjt:  SGTSGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKA-------AVS

Query:  TAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAE
        +AGSA+M NRYVLTG SW    F RVA+AA +V QKTKEKV AE
Subjt:  TAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAE

AT5G16840.3 binding partner of acd11 18.8e-6255.47Show/hide
Query:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD
        MA R+V+V N+S  ATE D+++FFSFSGE+E +++ + NE S   +VTFK+ +GAET++LLSGA+I DQ V I  AP+Y+ PA             P  +
Subjt:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD

Query:  NTTSGTSGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKA-------
          +SG    S +QKAEDVVSSMLAKGF LGKDA+ KAK+FDE+H  TSTA++ VASLDQKIGLS+K++ GT++VNEK++ +D+ FQV+E+TK+       
Subjt:  NTTSGTSGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKA-------

Query:  AVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAE
         VS+AGSA+M NRYVLTG SW    F RVA+AA +V QKTKEKV AE
Subjt:  AVSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKVLAE

AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.8e-6757.77Show/hide
Query:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD
        M+  TV+V+NVSL ATE+DL++FFSFSG+I Y+E + +N+ S++ +VTFKD +GAET++LL+G+TIVD  VT+  +PDY LP     D +A   S   ++
Subjt:  MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATD

Query:  NTTSGT-SGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAA-----
         ++S T    S  +KAEDVVS M++KGF LGKDA+ KAKS DE+HQLTSTAS++V S D++IG +EKI+ GTTVV+EKV+E+D+KFQV+EKTK+A     
Subjt:  NTTSGT-SGGSAIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAA-----

Query:  --VSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKV-LAEDQ
          VS AGSAIM NRYVLTGA+WVT  F RV+KAA +V QK KEKV LAE++
Subjt:  --VSTAGSAIMTNRYVLTGASWVTQTFQRVAKAAVDVSQKTKEKV-LAEDQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGAGAACGGTGAGAGTTACTAATGTCTCCTTAAGCGCGACAGAGAAAGATTTGAGAGACTTTTTTTCTTTTTCCGGTGAAATTGAATATGTCGAAATGCGAAA
GGACAATGAGCGATCTCAAGTTGTATTTGTTACCTTTAAGGATCCGAAAGGGGCAGAGACATCGATTCTACTCTCGGGAGCTACAATTGTTGATCAGCCTGTAACCATTG
CTTCTGCTCCAGATTACAACCTTCCTGCTGTTGTTGCCAGTGACCCTGTAGCTGTACCAGTGTCTACTCCAGCTACAGACAACACGACCTCTGGTACTTCTGGTGGATCT
GCAATACAAAAGGCAGAGGATGTTGTCAGCAGCATGCTGGCCAAAGGCTTCACTTTGGGCAAAGATGCCCTTAATAAGGCAAAGTCTTTTGATGAGAGGCACCAATTGAC
TTCGACAGCCTCATCCAAAGTCGCTTCTCTTGACCAAAAGATCGGCCTTAGCGAGAAAATTAGTGTTGGCACAACGGTGGTGAATGAGAAAGTGAGGGAAATGGATGAGA
AATTTCAAGTGTCTGAGAAAACCAAGGCAGCTGTGAGCACTGCAGGATCAGCCATAATGACTAACCGCTACGTCTTAACCGGGGCTTCCTGGGTTACCCAGACATTTCAA
AGAGTTGCGAAAGCTGCTGTAGATGTTAGCCAGAAAACGAAGGAGAAGGTTTTAGCTGAGGATCAAGGTAAACATGTGGGAAATTCTTCTTAA
mRNA sequenceShow/hide mRNA sequence
CTTCATTTCGCCATGTGTATTACTACGAACCTAAACAACCGCCAAGCCACAACACCATACAACTCTCAAGGCCATTCTTCCTTCTTCCTCTCCCCTCTCTCTCTAAGAAC
TTGGATTGGGAAATCTCTCAAGTGGATCGGACAGAAGCATCATGGCGACGAGAACGGTGAGAGTTACTAATGTCTCCTTAAGCGCGACAGAGAAAGATTTGAGAGACTTT
TTTTCTTTTTCCGGTGAAATTGAATATGTCGAAATGCGAAAGGACAATGAGCGATCTCAAGTTGTATTTGTTACCTTTAAGGATCCGAAAGGGGCAGAGACATCGATTCT
ACTCTCGGGAGCTACAATTGTTGATCAGCCTGTAACCATTGCTTCTGCTCCAGATTACAACCTTCCTGCTGTTGTTGCCAGTGACCCTGTAGCTGTACCAGTGTCTACTC
CAGCTACAGACAACACGACCTCTGGTACTTCTGGTGGATCTGCAATACAAAAGGCAGAGGATGTTGTCAGCAGCATGCTGGCCAAAGGCTTCACTTTGGGCAAAGATGCC
CTTAATAAGGCAAAGTCTTTTGATGAGAGGCACCAATTGACTTCGACAGCCTCATCCAAAGTCGCTTCTCTTGACCAAAAGATCGGCCTTAGCGAGAAAATTAGTGTTGG
CACAACGGTGGTGAATGAGAAAGTGAGGGAAATGGATGAGAAATTTCAAGTGTCTGAGAAAACCAAGGCAGCTGTGAGCACTGCAGGATCAGCCATAATGACTAACCGCT
ACGTCTTAACCGGGGCTTCCTGGGTTACCCAGACATTTCAAAGAGTTGCGAAAGCTGCTGTAGATGTTAGCCAGAAAACGAAGGAGAAGGTTTTAGCTGAGGATCAAGGT
AAACATGTGGGAAATTCTTCTTAAGTCATCCAAGAATTGCTGCGCTCTAAATATATAAAATCATATATGTTTGGCCAAAACAATTTGAGGTACCAATTCTTAGCTTGTTA
TTTTCATCTGAGTTTGATATATTTTTAATGCTTTATTTTAGTTTTAGTATTAGGGAGTACACATATAAGCTACATTACATGCTTATGTTGTAATTCAACAGTAAGAAAAG
CATATATGCTATGTGATAAAGTATCCAGAGCTCTTCTTTGTTTCTATTATAGATGGAATATCCCTTTTCCTTTTTA
Protein sequenceShow/hide protein sequence
MATRTVRVTNVSLSATEKDLRDFFSFSGEIEYVEMRKDNERSQVVFVTFKDPKGAETSILLSGATIVDQPVTIASAPDYNLPAVVASDPVAVPVSTPATDNTTSGTSGGS
AIQKAEDVVSSMLAKGFTLGKDALNKAKSFDERHQLTSTASSKVASLDQKIGLSEKISVGTTVVNEKVREMDEKFQVSEKTKAAVSTAGSAIMTNRYVLTGASWVTQTFQ
RVAKAAVDVSQKTKEKVLAEDQGKHVGNSS