; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G002870 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G002870
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionexpressed protein localized to the inner membrane of the chloroplast.
Genome locationchr10:4621438..4630992
RNA-Seq ExpressionLsi10G002870
SyntenyLsi10G002870
Gene Ontology termsGO:0009706 - chloroplast inner membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010970.1 hypothetical protein SDJN02_27768, partial [Cucurbita argyrosperma subsp. argyrosperma]3.9e-6892.36Show/hide
Query:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK
        GL+KASDLSSKSISFGQAPK+AIQRKCSRTNHKLSVRAEYNDGGR+GGG+FVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDEYGFRRA+RPIYYD+GLEK
Subjt:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK

Query:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
        TRQTLN KI QLNSAIDNVSSRLRGGN TP+VPVEADPEIEATM
Subjt:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM

XP_022944447.1 uncharacterized protein LOC111448897 [Cucurbita moschata]6.7e-6892.36Show/hide
Query:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK
        GL+KASDLSSKSISFGQAPK+AIQRKCSRT+HKLSVRAEYNDGGR+GGG+FVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDEYGFRRA+RPIYYD+GLEK
Subjt:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK

Query:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
        TRQTLN KI QLNSAIDNVSSRLRGGN TPAVPVEADPEIEATM
Subjt:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM

XP_022986629.1 uncharacterized protein LOC111484314 [Cucurbita maxima]2.3e-6893.06Show/hide
Query:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK
        GL+KASDLSSKSISFGQAPK+AIQRKCSR+NHKLSVRAEYNDGGRSGGG+FVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDEYGFRRA+RPIYYD+GLEK
Subjt:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK

Query:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
        TRQTLN KI QLNSAIDNVSSRLRGGN TPAVPVEADPEIEATM
Subjt:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM

XP_023512433.1 uncharacterized protein LOC111777191 [Cucurbita pepo subsp. pepo]2.3e-6893.06Show/hide
Query:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK
        GL+KASDLSSKSISFGQ PK+AIQRKCSRTNHKLSVRAEYNDGGRSGGG+FVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDEYGFRRA+RPIYYD+GLEK
Subjt:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK

Query:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
        TRQTLN KI QLNSAIDNVSSRLRGGN TPAVPVEADPEIEATM
Subjt:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM

XP_038902580.1 uncharacterized protein LOC120089235 [Benincasa hispida]4.6e-6996.53Show/hide
Query:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK
        GL+KASDLSSKSISFGQAPK+AIQRK SRTN KLSVRAEYNDG RSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK
Subjt:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK

Query:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
        TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
Subjt:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM

TrEMBL top hitse value%identityAlignment
A0A1S3C9M4 uncharacterized protein LOC1034983951.2e-6791.72Show/hide
Query:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK
        GL+KASDLSSKS+SFGQ PK+AI+RKCS+TNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAY+FAPQIRRS+LNEDE+GFRRAKRP+YYDEGLEK
Subjt:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK

Query:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPV-EADPEIEATM
        TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPV EA+PEIEATM
Subjt:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPV-EADPEIEATM

A0A5D3CQ66 Uncharacterized protein1.2e-6791.72Show/hide
Query:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK
        GL+KASDLSSKS+SFGQ PK+AI+RKCS+TNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAY+FAPQIRRS+LNEDE+GFRRAKRP+YYDEGLEK
Subjt:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK

Query:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPV-EADPEIEATM
        TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPV EA+PEIEATM
Subjt:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPV-EADPEIEATM

A0A6J1D647 uncharacterized protein LOC1110172733.0e-6693.06Show/hide
Query:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK
        GL+KASDLSSKSI+FGQAPK+AIQ+KC RTN KLSVRAEYND GR GGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK
Subjt:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK

Query:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
        TRQTLNAKI QLNSAIDNVSSRLRGGNNTPAVPVEADPE EATM
Subjt:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM

A0A6J1FVP6 uncharacterized protein LOC1114488973.2e-6892.36Show/hide
Query:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK
        GL+KASDLSSKSISFGQAPK+AIQRKCSRT+HKLSVRAEYNDGGR+GGG+FVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDEYGFRRA+RPIYYD+GLEK
Subjt:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK

Query:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
        TRQTLN KI QLNSAIDNVSSRLRGGN TPAVPVEADPEIEATM
Subjt:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM

A0A6J1JGK4 uncharacterized protein LOC1114843141.1e-6893.06Show/hide
Query:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK
        GL+KASDLSSKSISFGQAPK+AIQRKCSR+NHKLSVRAEYNDGGRSGGG+FVAGFLLGGAVFGTLAYIFAPQIRRS+LNEDEYGFRRA+RPIYYD+GLEK
Subjt:  GLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEK

Query:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM
        TRQTLN KI QLNSAIDNVSSRLRGGN TPAVPVEADPEIEATM
Subjt:  TRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G42960.1 expressed protein localized to the inner membrane of the chloroplast.2.6e-1741.48Show/hide
Query:  SISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGG-GDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDE--GLEKTRQTLNAK
        S+SFG      +     RT   L++++ Y D   SG  G FV GF+LGG + G L  ++APQI +++   D     R      YDE   LEKTR+ L  K
Subjt:  SISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSGG-GDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDE--GLEKTRQTLNAK

Query:  ISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEAT
        I+QLNSAID+VSS+L+   +TP     +  EIEAT
Subjt:  ISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEAT

AT3G02900.1 unknown protein8.5e-3761.83Show/hide
Query:  VAIQRKCSRTNHKLSVRAEYNDGGRSGG-GDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEKTRQTLNAKISQLNSAIDNV
        + +Q K +R +HKLSV A Y  G + GG  DFV GFLLG AVFGTLAYIFAPQIRRS+L+E+EYGF++ ++P+YYDEGLE+ R+ LN KI QLNSAID V
Subjt:  VAIQRKCSRTNHKLSVRAEYNDGGRSGG-GDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEKTRQTLNAKISQLNSAIDNV

Query:  SSRLRGG-------NNTPAVPVEADPEIEAT
        SSRL+GG        ++P+VPVE D E EAT
Subjt:  SSRLRGG-------NNTPAVPVEADPEIEAT

AT3G02900.2 unknown protein8.5e-3761.83Show/hide
Query:  VAIQRKCSRTNHKLSVRAEYNDGGRSGG-GDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEKTRQTLNAKISQLNSAIDNV
        + +Q K +R +HKLSV A Y  G + GG  DFV GFLLG AVFGTLAYIFAPQIRRS+L+E+EYGF++ ++P+YYDEGLE+ R+ LN KI QLNSAID V
Subjt:  VAIQRKCSRTNHKLSVRAEYNDGGRSGG-GDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEKTRQTLNAKISQLNSAIDNV

Query:  SSRLRGG-------NNTPAVPVEADPEIEAT
        SSRL+GG        ++P+VPVE D E EAT
Subjt:  SSRLRGG-------NNTPAVPVEADPEIEAT

AT5G16660.1 unknown protein4.4e-4166.22Show/hide
Query:  VKASDLS--SKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSG-GGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLN-EDEYGFRRAKRPIYYDEGL
        VKA+ LS  +K  S  +   + I +K +RT  K SV A Y DG RSG  GDF+AGFLLGGAVFG +AYIFAPQIRRS+LN EDEYGF + K+P YYDEGL
Subjt:  VKASDLS--SKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSG-GGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLN-EDEYGFRRAKRPIYYDEGL

Query:  EKTRQTLNAKISQLNSAIDNVSSRLRG-GNNTPA--VPVEADPEIEAT
        EKTR+TLN KI QLNSAIDNVSSRLRG   NT +  VPVE DPE+EAT
Subjt:  EKTRQTLNAKISQLNSAIDNVSSRLRG-GNNTPA--VPVEADPEIEAT

AT5G16660.2 unknown protein5.3e-3965.54Show/hide
Query:  VKASDLS--SKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSG-GGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLN-EDEYGFRRAKRPIYYDEGL
        VKA+ LS  +K  S  +   + I +K +RT  K SV A   DG RSG  GDF+AGFLLGGAVFG +AYIFAPQIRRS+LN EDEYGF + K+P YYDEGL
Subjt:  VKASDLS--SKSISFGQAPKVAIQRKCSRTNHKLSVRAEYNDGGRSG-GGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLN-EDEYGFRRAKRPIYYDEGL

Query:  EKTRQTLNAKISQLNSAIDNVSSRLRG-GNNTPA--VPVEADPEIEAT
        EKTR+TLN KI QLNSAIDNVSSRLRG   NT +  VPVE DPE+EAT
Subjt:  EKTRQTLNAKISQLNSAIDNVSSRLRG-GNNTPA--VPVEADPEIEAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAATAGAGGTGAACAAAAGCCGGCTATCTTCAACACTCTCTTGTTCGTTCTGCCTCGTTTCTCTCTCTCTCCAATTCTCTCTAGATCTCTCCTCTGAGTCCTCTCC
TTCCACATGGCCGCCTGCTTTTCTCCGTCACTCTCCGTATCTGGCATGCCCTTACGTTGATGGATTTTGGATTAACATTGAGTTCGATGTAGATTGCTGTTCTGGAAGGG
GACTGGTCAAGGCCTCAGATCTCTCCTCAAAGTCCATTTCCTTTGGGCAAGCACCAAAAGTCGCCATTCAGAGGAAGTGCTCGAGAACCAACCACAAGTTATCAGTCCGT
GCTGAGTACAATGATGGTGGTAGAAGTGGAGGTGGGGATTTTGTGGCTGGTTTTCTTCTTGGGGGTGCTGTATTTGGAACCTTAGCTTATATTTTTGCTCCGCAGATCAG
GAGATCTCTACTAAATGAAGACGAGTACGGTTTTAGGAGGGCTAAGCGTCCAATCTACTACGACGAAGGTCTAGAGAAAACCAGACAGACGTTGAATGCAAAAATAAGCC
AATTGAATTCTGCGATTGATAACGTATCTTCACGTCTGAGAGGTGGCAACAATACTCCGGCTGTGCCAGTTGAAGCTGATCCTGAGATAGAAGCTACCATGTAA
mRNA sequenceShow/hide mRNA sequence
CTTCGGTCAACTTGGGGGTTCGCTTCCTGATCGGGGAAGCTACTCGATTTTGGGGAGATTTTTGCTAATACTACCAAGAGATATATGGTTCGAATTTTCGATGTTGATTT
GAAAGAGTGATAAATGTATAATTAATAATCTAGTTATATAATACAAAAATGGTAATAGAGGTGAACAAAAGCCGGCTATCTTCAACACTCTCTTGTTCGTTCTGCCTCGT
TTCTCTCTCTCTCCAATTCTCTCTAGATCTCTCCTCTGAGTCCTCTCCTTCCACATGGCCGCCTGCTTTTCTCCGTCACTCTCCGTATCTGGCATGCCCTTACGTTGATG
GATTTTGGATTAACATTGAGTTCGATGTAGATTGCTGTTCTGGAAGGGGACTGGTCAAGGCCTCAGATCTCTCCTCAAAGTCCATTTCCTTTGGGCAAGCACCAAAAGTC
GCCATTCAGAGGAAGTGCTCGAGAACCAACCACAAGTTATCAGTCCGTGCTGAGTACAATGATGGTGGTAGAAGTGGAGGTGGGGATTTTGTGGCTGGTTTTCTTCTTGG
GGGTGCTGTATTTGGAACCTTAGCTTATATTTTTGCTCCGCAGATCAGGAGATCTCTACTAAATGAAGACGAGTACGGTTTTAGGAGGGCTAAGCGTCCAATCTACTACG
ACGAAGGTCTAGAGAAAACCAGACAGACGTTGAATGCAAAAATAAGCCAATTGAATTCTGCGATTGATAACGTATCTTCACGTCTGAGAGGTGGCAACAATACTCCGGCT
GTGCCAGTTGAAGCTGATCCTGAGATAGAAGCTACCATGTAAATTCAATTTCGACATAATTGAAAAGGTTTGAAATTTTCACATCTTAGAGACCATATATTCATGTGACA
CATATGCCACCATTTTTAATTGAAAGTTTTTTGGATTGATCAAGATTAAAGTGGATTGTTTGTTACGGTTAAATTAGAATTGTTGGAAATATTGGAATACAAGCACTTAG
TTTAGGGCTAATAATTAAGTGTATAACAGCATTTTTAAAGAATTCAAATACAGGAAAATCTACCAATGATAGATTCTATTGTTGAATTGCAAATACAGGAAAATCTACCA
ATGATAGATTCTATTGTTAATAGATTCCTATTAGTAATAGTATCATTGATAGACTCTGAGAATTGGATCTT
Protein sequenceShow/hide protein sequence
MVIEVNKSRLSSTLSCSFCLVSLSLQFSLDLSSESSPSTWPPAFLRHSPYLACPYVDGFWINIEFDVDCCSGRGLVKASDLSSKSISFGQAPKVAIQRKCSRTNHKLSVR
AEYNDGGRSGGGDFVAGFLLGGAVFGTLAYIFAPQIRRSLLNEDEYGFRRAKRPIYYDEGLEKTRQTLNAKISQLNSAIDNVSSRLRGGNNTPAVPVEADPEIEATM