; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G003090 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G003090
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr10:4936356..4937036
RNA-Seq ExpressionLsi10G003090
SyntenyLsi10G003090
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GIL48267.1 hypothetical protein Vafri_4920, partial [Volvox africanus]1.9e-0455.06Show/hide
Query:  GLGSGDGGDDDG--GGGNDGDDGGSGICWDGGGVRGRRDRGGGGGDTIGDGGGVSGCDGGGNFCGGGVRGLRDGGGGDDSTGDGGGGDGIHCGGGVRGRR
        G G GDGG D G  GGG+ G DGG     DGGG  G    G GGGD  GDGGG  G DGGG+  GGG  G  DGGGGD   GDGGGGDG    GG  G  
Subjt:  GLGSGDGGDDDG--GGGNDGDDGGSGICWDGGGVRGRRDRGGGGGDTIGDGGGVSGCDGGGNFCGGGVRGLRDGGGGDDSTGDGGGGDGIHCGGGVRGRR

Query:  DG---GGGDNRGDGGVRGCLDGGGN-RGDGGVRGCRDGAGGNRCDGGVRGRRNGGGGG
        DG   GGGD  GDGG  G  DGGG+  GDGG  G  DG G    DGG  G  +GGG G
Subjt:  DG---GGGDNRGDGGVRGCLDGGGN-RGDGGVRGCRDGAGGNRCDGGVRGRRNGGGGG
KAG5442534.1 hypothetical protein CSKR_202554 [Clonorchis sinensis]1.1e-0455.56Show/hide
Query:  GLGSGDGGDDDGGGGNDGDDGGSGICWDGGGVRGRRDRGGGGGDTIGDGGGVSGCDGGGNFCGGGVRGLRDGGGGDDSTGDGGGGD-GIHCGGGVRGRRD
        G G GDGG  DGGGG+ G DGG G    GGG  G  D GGGGGD  G G G  G DGGG   GGG      GGGG D  GDGGGGD G   GGG  G  D
Subjt:  GLGSGDGGDDDGGGGNDGDDGGSGICWDGGGVRGRRDRGGGGGDTIGDGGGVSGCDGGGNFCGGGVRGLRDGGGGDDSTGDGGGGD-GIHCGGGVRGRRD

Query:  GGGGDNRGDGGVRGCLDGGGNRGDGGVRGCRDGAGGNRCDGGVRGRRNGGGGG
        GGGGD  GDGG  G  DGGG+ G GG  G   G GG   DGG  G  +G GGG
Subjt:  GGGGDNRGDGGVRGCLDGGGNRGDGGVRGCRDGAGGNRCDGGVRGRRNGGGGG
TrEMBL top hitse value%identityAlignment
A0A0A0LKZ5 Uncharacterized protein6.9e-1363.45Show/hide
Query:  MIFLGLCGLGSGDGGDDDGGGGNDGD--DGG-SGICWDGGG-VRGRRDRGGGGGDTIGDGGGVSGCDGGGNFCGGGVRGLRDGGG--GDDSTGDGGGGDG
        MIFLGLCG+G G+GG+D  G G DGD  DGG  GI W+GGG  RGR  R GGGGDTIGDGGG     GGG   GGGVRG RDGGG  G    G GGG  G
Subjt:  MIFLGLCGLGSGDGGDDDGGGGNDGD--DGG-SGICWDGGG-VRGRRDRGGGGGDTIGDGGGVSGCDGGGNFCGGGVRGLRDGGG--GDDSTGDGGGGDG

Query:  IHCGGGVRGRRDGGGGDNRGDGGVRGCLDGGGNRGDGGVRGCRDG
          C GGVR RRDGGGG NR DGGVRG  DGG  R  GG    RDG
Subjt:  IHCGGGVRGRRDGGGGDNRGDGGVRGCLDGGGNRGDGGVRGCRDG
R1CG17 Uncharacterized protein (Fragment)7.7e-0450.91Show/hide
Query:  GSGDGGDDDGGGGNDGDDGGSGICWDGGGVRGRRDRGGGGGDT--------IGDGGGVSGCDGG---GNFCGGGVRGLRDGGGGDDSTGDGGGGDGIHCG
        G GDGG D GGG  D D GG     DGGG  G  D GGG GDT         G GGG  G DGG   G   GGG  G  DGGGGD  T DGGGG+G   G
Subjt:  GSGDGGDDDGGGGNDGDDGGSGICWDGGGVRGRRDRGGGGGDT--------IGDGGGVSGCDGG---GNFCGGGVRGLRDGGGGDDSTGDGGGGDGIHCG

Query:  GGVRGRRDGGGGDNRGDGGVRGCLDGGGNRGD---GGVRGCRDGAGGN--RCDGGVRGRRNGGGG
        GG  G  DGGGGD   DGG  G  DGGG  G+   GG  G  DG GG+     GG  G   GGGG
Subjt:  GGVRGRRDGGGGDNRGDGGVRGCLDGGGNRGD---GGVRGCRDGAGGN--RCDGGVRGRRNGGGG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCTTTCTTGGACTTTGTGGGCTCGGTAGTGGTGATGGTGGCGATGACGATGGCGGTGGCGGCAACGATGGCGATGACGGTGGTAGTGGTATTTGTTGGGATGGTGG
TGGTGTTCGTGGCCGTCGTGATCGTGGTGGTGGTGGTGGTGACACCATCGGTGATGGCGGCGGTGTCTCGGGTTGTGACGGTGGTGGCAACTTTTGTGGTGGTGGTGTTC
GAGGCCTTCGTGATGGTGGTGGAGGCGATGACAGCACTGGTGATGGTGGTGGTGGCGATGGTATCCATTGTGGTGGTGGCGTTCGAGGACGTCGTGATGGTGGTGGTGGT
GACAACCGAGGTGATGGTGGCGTTCGAGGATGTCTTGATGGTGGTGGAAACCGGGGCGATGGTGGTGTTCGAGGATGTCGTGATGGTGCAGGTGGAAACCGATGTGATGG
CGGGGTTCGAGGACGTCGTAATGGTGGTGGTGGAGGCCGATTGTGTCTAGGAATGAAAGGCAGAGTGCAATTATGGCCCCAAAACCAACCTTCATTGGCAGAGCTAAGAG
TTGAGATGCATGCCCAAACGAAGAGAATGAACACTTTTGAACATATGAAAGCCATGGTTGGATATTATGAAGCTTTTCAATTGATAAAGAAACACAAACCTTATCAAAGT
TTTGTAAGAGTAAATTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCTTTCTTGGACTTTGTGGGCTCGGTAGTGGTGATGGTGGCGATGACGATGGCGGTGGCGGCAACGATGGCGATGACGGTGGTAGTGGTATTTGTTGGGATGGTGG
TGGTGTTCGTGGCCGTCGTGATCGTGGTGGTGGTGGTGGTGACACCATCGGTGATGGCGGCGGTGTCTCGGGTTGTGACGGTGGTGGCAACTTTTGTGGTGGTGGTGTTC
GAGGCCTTCGTGATGGTGGTGGAGGCGATGACAGCACTGGTGATGGTGGTGGTGGCGATGGTATCCATTGTGGTGGTGGCGTTCGAGGACGTCGTGATGGTGGTGGTGGT
GACAACCGAGGTGATGGTGGCGTTCGAGGATGTCTTGATGGTGGTGGAAACCGGGGCGATGGTGGTGTTCGAGGATGTCGTGATGGTGCAGGTGGAAACCGATGTGATGG
CGGGGTTCGAGGACGTCGTAATGGTGGTGGTGGAGGCCGATTGTGTCTAGGAATGAAAGGCAGAGTGCAATTATGGCCCCAAAACCAACCTTCATTGGCAGAGCTAAGAG
TTGAGATGCATGCCCAAACGAAGAGAATGAACACTTTTGAACATATGAAAGCCATGGTTGGATATTATGAAGCTTTTCAATTGATAAAGAAACACAAACCTTATCAAAGT
TTTGTAAGAGTAAATTTTTGA
Protein sequenceShow/hide protein sequence
MIFLGLCGLGSGDGGDDDGGGGNDGDDGGSGICWDGGGVRGRRDRGGGGGDTIGDGGGVSGCDGGGNFCGGGVRGLRDGGGGDDSTGDGGGGDGIHCGGGVRGRRDGGGG
DNRGDGGVRGCLDGGGNRGDGGVRGCRDGAGGNRCDGGVRGRRNGGGGGRLCLGMKGRVQLWPQNQPSLAELRVEMHAQTKRMNTFEHMKAMVGYYEAFQLIKKHKPYQS
FVRVNF