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Lsi10G003410 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G003410
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic
Genome locationchr10:5362667..5364545
RNA-Seq ExpressionLsi10G003410
SyntenyLsi10G003410
Gene Ontology termsNA
InterPro domainsIPR036410 - Heat shock protein DnaJ, cysteine-rich domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004153120.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucumis sativus]8.5e-4077.14Show/hide
Query:  ASSTSNNIFPFPAYKLLKSPPYTSKTKSFNIPFAA-ATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPE
        A+STS NIFPFP+Y++ +S    S      +PFAA  T +LLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCF+CQGFGLKSCP+CGKGGLTPE
Subjt:  ASSTSNNIFPFPAYKLLKSPPYTSKTKSFNIPFAA-ATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPE

Query:  QRGER
        QRGER
Subjt:  QRGER

XP_008459263.1 PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Cucumis melo]7.7e-4175.7Show/hide
Query:  AMASSTSNNIFPFPAYKLLKSPPYTSKTKSFNIPFAA-ATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLT
        A ++STS NIFPFP+Y++++S   T  + +  +PFAA  T +LLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCF+CQGFGLKSCP+CGKGGLT
Subjt:  AMASSTSNNIFPFPAYKLLKSPPYTSKTKSFNIPFAA-ATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLT

Query:  PEQRGER
        PEQRGER
Subjt:  PEQRGER

XP_022152486.1 uncharacterized protein LOC111020203 [Momordica charantia]1.6e-3874.55Show/hide
Query:  ASSTSNNIFPF------PAYKLLKSPPYTSKTKSFNIPFAAATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKG
        +S T N IFPF      P ++LL SPP   K +S NI F AA    LPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCF+CQGFGLKSCPECG G
Subjt:  ASSTSNNIFPF------PAYKLLKSPPYTSKTKSFNIPFAAATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKG

Query:  GLTPEQRGER
        GLTPEQRGER
Subjt:  GLTPEQRGER

XP_023521952.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [Cucurbita pepo subsp. pepo]4.7e-3873.79Show/hide
Query:  SSTSNNIFPFPAYKLLKSPPYTSKTKSFNIPFAAATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPEQR
        S+ S   FPFP +     P   S++K  NIPFAAA +  LPKRCQ CGGKGAIDCPGCKGTG+NKKNGNIFERWKCF+CQGFGLKSCP+CGKGGLTPEQR
Subjt:  SSTSNNIFPFPAYKLLKSPPYTSKTKSFNIPFAAATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPEQR

Query:  GER
        GER
Subjt:  GER

XP_038901776.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Benincasa hispida]1.9e-4786.36Show/hide
Query:  MAMASSTSNNIFPFPAYKLLK-SPPYTSKTKSFNIPF--AAATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKG
        MAMA ++SNNIFPF  Y+L++ SPPYTSKTKS NI    AAA RSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKG
Subjt:  MAMASSTSNNIFPFPAYKLLK-SPPYTSKTKSFNIPF--AAATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKG

Query:  GLTPEQRGER
        GLTPEQRGER
Subjt:  GLTPEQRGER

TrEMBL top hitse value%identityAlignment
A0A0A0LIM5 Uncharacterized protein4.1e-4077.14Show/hide
Query:  ASSTSNNIFPFPAYKLLKSPPYTSKTKSFNIPFAA-ATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPE
        A+STS NIFPFP+Y++ +S    S      +PFAA  T +LLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCF+CQGFGLKSCP+CGKGGLTPE
Subjt:  ASSTSNNIFPFPAYKLLKSPPYTSKTKSFNIPFAA-ATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPE

Query:  QRGER
        QRGER
Subjt:  QRGER

A0A1S3C9W1 protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic3.7e-4175.7Show/hide
Query:  AMASSTSNNIFPFPAYKLLKSPPYTSKTKSFNIPFAA-ATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLT
        A ++STS NIFPFP+Y++++S   T  + +  +PFAA  T +LLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCF+CQGFGLKSCP+CGKGGLT
Subjt:  AMASSTSNNIFPFPAYKLLKSPPYTSKTKSFNIPFAA-ATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLT

Query:  PEQRGER
        PEQRGER
Subjt:  PEQRGER

A0A6J1DHW0 uncharacterized protein LOC1110202037.8e-3974.55Show/hide
Query:  ASSTSNNIFPF------PAYKLLKSPPYTSKTKSFNIPFAAATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKG
        +S T N IFPF      P ++LL SPP   K +S NI F AA    LPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCF+CQGFGLKSCPECG G
Subjt:  ASSTSNNIFPF------PAYKLLKSPPYTSKTKSFNIPFAAATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKG

Query:  GLTPEQRGER
        GLTPEQRGER
Subjt:  GLTPEQRGER

A0A6J1HLG5 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic2.9e-3872.82Show/hide
Query:  SSTSNNIFPFPAYKLLKSPPYTSKTKSFNIPFAAATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPEQR
        S+ S + FPFP +     P    ++K  NIPFAAA +  LPKRCQ CGGKGAIDCPGCKGTG+NKKNGNIFERWKCF+CQGFGLKSCP+CGKGGLTPEQR
Subjt:  SSTSNNIFPFPAYKLLKSPPYTSKTKSFNIPFAAATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPEQR

Query:  GER
        GER
Subjt:  GER

A0A6J1JSI3 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic1.9e-3772.82Show/hide
Query:  SSTSNNIFPFPAYKLLKSPPYTSKTKSFNIPFAAATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPEQR
        S+ S   FPFP +     P   S++K  NIPFAAA +  LPKRCQ CGGKGAIDC GCKGTG+NKKNGNIFERWKCF+CQGFGLKSCP+CGKGGLTPEQR
Subjt:  SSTSNNIFPFPAYKLLKSPPYTSKTKSFNIPFAAATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPEQR

Query:  GER
        GER
Subjt:  GER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G22630.1 unknown protein2.0e-3187.1Show/hide
Query:  KRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPEQRGER
        K C+ CG KGAI+CPGCKGTGKNKKNGN+FERWKCFDCQGFG+KSCP+CGKGGLTPEQRGER
Subjt:  KRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPEQRGER


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATGGCTAGCTCTACCTCTAACAACATCTTCCCATTTCCGGCCTATAAACTTCTCAAATCGCCGCCGTATACAAGTAAAACTAAATCATTTAACATTCCTTTTGC
TGCAGCCACAAGATCTTTGCTGCCCAAAAGATGCCAGAAATGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGGCACGGGAAAGAACAAGAAAAACGGAAACA
TTTTCGAGCGTTGGAAATGTTTTGATTGTCAAGGATTTGGATTAAAGAGTTGTCCTGAATGTGGAAAAGGAGGACTCACCCCTGAACAAAGGGGAGAAAGATAA
mRNA sequenceShow/hide mRNA sequence
TAGTGGTGTAGCAAAGAGGTATGGATAATGTTGAGATCAGTTGATAGATCATAAAGAAGAAGAAAAGTAGGAAGACGATGGCCATGGCTAGCTCTACCTCTAACAACATC
TTCCCATTTCCGGCCTATAAACTTCTCAAATCGCCGCCGTATACAAGTAAAACTAAATCATTTAACATTCCTTTTGCTGCAGCCACAAGATCTTTGCTGCCCAAAAGATG
CCAGAAATGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGGCACGGGAAAGAACAAGAAAAACGGAAACATTTTCGAGCGTTGGAAATGTTTTGATTGTCAAG
GATTTGGATTAAAGAGTTGTCCTGAATGTGGAAAAGGAGGACTCACCCCTGAACAAAGGGGAGAAAGATAATGCATATACACTTCTTTAAAGCTCTCAAATTAACCTTTA
TAATATCTACACTTTAATTTCTTCTTTTTCTAGTGCAATGATGTATTTATATTTCATAAAGTTTTCTAATTTAAAGGTTTTATTATATTTTGTATATTAAATGTATTTGG
TTTTTTCTTCTTACATTTAGAATTTTGCCAAAGAGAAATTAGGGTAGTGAGAATATTCCCAAAATCCAACTTTATTACTAACATTAAGTATACCTAAACTAGAGGCTTTA
TTCAAACTCTCTTTGTGGGCTAAAATAAATTATTTGAATTACAACAAATGCAAATGTAGAAATCTCGGTCTTTTTTTAAAATACTTGGGGTAGGAGGATTCAAACTACAG
ACTTCGTGATTTCTAGCACACTCTATGCCAGTTGAACTATGCTCGATTTAGCTGGAGATTTTAGTCTTTGATCCATTGAAATTAGTAGATATTTTAGCCTAACCAAGCTG
ATATTAGCATTAAAATAGATTGTTTTTAAATCCAAAAATAATAATAATATAAGTTTAGACCATTATGGTGGG
Protein sequenceShow/hide protein sequence
MAMASSTSNNIFPFPAYKLLKSPPYTSKTKSFNIPFAAATRSLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPEQRGER