; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G003490 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G003490
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box protein
Genome locationchr10:5420811..5421854
RNA-Seq ExpressionLsi10G003490
SyntenyLsi10G003490
Gene Ontology termsNA
InterPro domainsIPR017451 - F-box associated interaction domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039382.1 F-box protein [Cucumis melo var. makuwa]8.0e-3348.31Show/hide
Query:  MHCLDSDT-MSCVATFEFDDNCSSIEIRNYCNGLMFVIK---DRYRAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNLK-
        +HC+D D+  S VA+F F+ + S I I N CNGL+++ K   D    GILNPMTNEF +I     E  +    GFGF P+TK YKLF+ +      NLK 
Subjt:  MHCLDSDT-MSCVATFEFDDNCSSIEIRNYCNGLMFVIK---DRYRAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNLK-

Query:  --YVMEVFTFGRSGTNRWKHLDCLPFIIYTDGAYLNGVIYWMGQ--VKQDEFLIYALDVETEKIEFIATLEVGPNSRN
          Y+ME+FTF  +G  +W+H + LPF+++  G YLNGVIYW+G+   K+ E +IYALDV+TE++E IATLE+GP  +N
Subjt:  --YVMEVFTFGRSGTNRWKHLDCLPFIIYTDGAYLNGVIYWMGQ--VKQDEFLIYALDVETEKIEFIATLEVGPNSRN

KAE8648955.1 hypothetical protein Csa_007901 [Cucumis sativus]1.9e-3448.57Show/hide
Query:  MHCLD-SDTMSCVATFEFDDN--CSSIEIRNYCNGLMFVIK---DRYRAGILNPMTNEFFKIG--GLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGT
        M+C+D + T + +A+F FD+N     I+I N CNGL+++ K   + +  GILNPMTNEFF +          ISC +GFGF  KTK YKLFK     E +
Subjt:  MHCLD-SDTMSCVATFEFDDN--CSSIEIRNYCNGLMFVIK---DRYRAGILNPMTNEFFKIG--GLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGT

Query:  NLKYVMEVFTFGRS-GTNRWKHLDCLPFIIYTDGAYLNGVIYWMGQVKQDEFLIYALDVETEKIEFIATLEVGPN
        +L  +MEV  FG++  T  W+HL CLPF+ Y DG YLNGVIYW+G+ K+++ +IY+L+VETEKIE I  L+V P+
Subjt:  NLKYVMEVFTFGRS-GTNRWKHLDCLPFIIYTDGAYLNGVIYWMGQVKQDEFLIYALDVETEKIEFIATLEVGPN

XP_004141601.1 F-box protein At3g07870 [Cucumis sativus]1.2e-3347.75Show/hide
Query:  MHCLDSDTMSCVATFEFDD--NCSSIEIRNYCNGLMFVIK----DRYRAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNL
        +HC+D DTMSCV +F F+D  N S++ I + C+ L+ + K    D    GILNPMTNEF ++     + S S  +GFGF PKTK YKLF+ +  R+    
Subjt:  MHCLDSDTMSCVATFEFDD--NCSSIEIRNYCNGLMFVIK----DRYRAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNL

Query:  KYVMEVFTFG-RSGT-NRWKHLDCLPFIIYTDGAYLNGVIYWMGQVKQDEFLIYALDVETEKIEFIATLEVGPNSRNY
          +ME+  FG RS T   W+H  C P      GAYLNGVIYWMG+ K   ++IYALDVETE++E +A LEVGP++  Y
Subjt:  KYVMEVFTFG-RSGT-NRWKHLDCLPFIIYTDGAYLNGVIYWMGQVKQDEFLIYALDVETEKIEFIATLEVGPNSRNY

XP_004141602.1 F-box protein At3g07870 [Cucumis sativus]1.9e-3448.57Show/hide
Query:  MHCLD-SDTMSCVATFEFDDN--CSSIEIRNYCNGLMFVIK---DRYRAGILNPMTNEFFKIG--GLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGT
        M+C+D + T + +A+F FD+N     I+I N CNGL+++ K   + +  GILNPMTNEFF +          ISC +GFGF  KTK YKLFK     E +
Subjt:  MHCLD-SDTMSCVATFEFDDN--CSSIEIRNYCNGLMFVIK---DRYRAGILNPMTNEFFKIG--GLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGT

Query:  NLKYVMEVFTFGRS-GTNRWKHLDCLPFIIYTDGAYLNGVIYWMGQVKQDEFLIYALDVETEKIEFIATLEVGPN
        +L  +MEV  FG++  T  W+HL CLPF+ Y DG YLNGVIYW+G+ K+++ +IY+L+VETEKIE I  L+V P+
Subjt:  NLKYVMEVFTFGRS-GTNRWKHLDCLPFIIYTDGAYLNGVIYWMGQVKQDEFLIYALDVETEKIEFIATLEVGPN

XP_008459707.1 PREDICTED: F-box protein At3g07870-like [Cucumis melo]1.0e-3247.75Show/hide
Query:  MHCLDSDT-MSCVATFEFDDNCSSIEIRNYCNGLMFVIK---DRYRAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNLK-
        +HC+D D+  S VA+F F+ + S I I N CNGL+++ K   D    GILNPMTNEF +I     E  +    GFGF P+TK YKLF+ +      NLK 
Subjt:  MHCLDSDT-MSCVATFEFDDNCSSIEIRNYCNGLMFVIK---DRYRAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNLK-

Query:  --YVMEVFTFGRSGTNRWKHLDCLPFIIYTDGAYLNGVIYWMGQ--VKQDEFLIYALDVETEKIEFIATLEVGPNSRN
          Y+ME+FTF  +G  +W+H + LPF+++  G YLNGVIYW+G+   K+ E +IYALDV+TE++E  ATLE+GP+ +N
Subjt:  --YVMEVFTFGRSGTNRWKHLDCLPFIIYTDGAYLNGVIYWMGQ--VKQDEFLIYALDVETEKIEFIATLEVGPNSRN

TrEMBL top hitse value%identityAlignment
A0A0A0KSJ2 F-box domain-containing protein9.2e-3548.57Show/hide
Query:  MHCLD-SDTMSCVATFEFDDN--CSSIEIRNYCNGLMFVIK---DRYRAGILNPMTNEFFKIG--GLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGT
        M+C+D + T + +A+F FD+N     I+I N CNGL+++ K   + +  GILNPMTNEFF +          ISC +GFGF  KTK YKLFK     E +
Subjt:  MHCLD-SDTMSCVATFEFDDN--CSSIEIRNYCNGLMFVIK---DRYRAGILNPMTNEFFKIG--GLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGT

Query:  NLKYVMEVFTFGRS-GTNRWKHLDCLPFIIYTDGAYLNGVIYWMGQVKQDEFLIYALDVETEKIEFIATLEVGPN
        +L  +MEV  FG++  T  W+HL CLPF+ Y DG YLNGVIYW+G+ K+++ +IY+L+VETEKIE I  L+V P+
Subjt:  NLKYVMEVFTFGRS-GTNRWKHLDCLPFIIYTDGAYLNGVIYWMGQVKQDEFLIYALDVETEKIEFIATLEVGPN

A0A0A0KUJ1 FBA_3 domain-containing protein6.0e-3447.75Show/hide
Query:  MHCLDSDTMSCVATFEFDD--NCSSIEIRNYCNGLMFVIK----DRYRAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNL
        +HC+D DTMSCV +F F+D  N S++ I + C+ L+ + K    D    GILNPMTNEF ++     + S S  +GFGF PKTK YKLF+ +  R+    
Subjt:  MHCLDSDTMSCVATFEFDD--NCSSIEIRNYCNGLMFVIK----DRYRAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNL

Query:  KYVMEVFTFG-RSGT-NRWKHLDCLPFIIYTDGAYLNGVIYWMGQVKQDEFLIYALDVETEKIEFIATLEVGPNSRNY
          +ME+  FG RS T   W+H  C P      GAYLNGVIYWMG+ K   ++IYALDVETE++E +A LEVGP++  Y
Subjt:  KYVMEVFTFG-RSGT-NRWKHLDCLPFIIYTDGAYLNGVIYWMGQVKQDEFLIYALDVETEKIEFIATLEVGPNSRNY

A0A0A0LWG1 F-box domain-containing protein2.7e-2639.53Show/hide
Query:  MHCLDSDTMSCVATFEFD---------------DNCSSIEIRNYCNGLMFVIK---DRYRAGILNPMTNEFFKIGGLTSERSISCKF---GFGFCPKTKL
        MHC++ DT      F+FD               D   +I +   CNGLM + K     +  GI NPMTNEF ++    SE      F   GFGF P TK 
Subjt:  MHCLDSDTMSCVATFEFD---------------DNCSSIEIRNYCNGLMFVIK---DRYRAGILNPMTNEFFKIGGLTSERSISCKF---GFGFCPKTKL

Query:  YKLFK-----FSFHREGTNL--KYVMEVFTFGRSGT-------NRWKHLDCLPFIIYTDGAYLNGVIYWM----GQVKQDEFLIYALDVETEKIEFIATL
        YKLF+     F   R  + +   Y MEV TFGRSGT       N+W+ L  LPF I  DG YLNG+IYW+    G+ K+ +++IYALDVETE IE    L
Subjt:  YKLFK-----FSFHREGTNL--KYVMEVFTFGRSGT-------NRWKHLDCLPFIIYTDGAYLNGVIYWM----GQVKQDEFLIYALDVETEKIEFIATL

Query:  EVGPNSRNYVQPIKG
        +V  N    +    G
Subjt:  EVGPNSRNYVQPIKG

A0A1S3CB99 F-box protein At3g07870-like5.0e-3347.75Show/hide
Query:  MHCLDSDT-MSCVATFEFDDNCSSIEIRNYCNGLMFVIK---DRYRAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNLK-
        +HC+D D+  S VA+F F+ + S I I N CNGL+++ K   D    GILNPMTNEF +I     E  +    GFGF P+TK YKLF+ +      NLK 
Subjt:  MHCLDSDT-MSCVATFEFDDNCSSIEIRNYCNGLMFVIK---DRYRAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNLK-

Query:  --YVMEVFTFGRSGTNRWKHLDCLPFIIYTDGAYLNGVIYWMGQ--VKQDEFLIYALDVETEKIEFIATLEVGPNSRN
          Y+ME+FTF  +G  +W+H + LPF+++  G YLNGVIYW+G+   K+ E +IYALDV+TE++E  ATLE+GP+ +N
Subjt:  --YVMEVFTFGRSGTNRWKHLDCLPFIIYTDGAYLNGVIYWMGQ--VKQDEFLIYALDVETEKIEFIATLEVGPNSRN

A0A5A7T7C6 F-box protein3.9e-3348.31Show/hide
Query:  MHCLDSDT-MSCVATFEFDDNCSSIEIRNYCNGLMFVIK---DRYRAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNLK-
        +HC+D D+  S VA+F F+ + S I I N CNGL+++ K   D    GILNPMTNEF +I     E  +    GFGF P+TK YKLF+ +      NLK 
Subjt:  MHCLDSDT-MSCVATFEFDDNCSSIEIRNYCNGLMFVIK---DRYRAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNLK-

Query:  --YVMEVFTFGRSGTNRWKHLDCLPFIIYTDGAYLNGVIYWMGQ--VKQDEFLIYALDVETEKIEFIATLEVGPNSRN
          Y+ME+FTF  +G  +W+H + LPF+++  G YLNGVIYW+G+   K+ E +IYALDV+TE++E IATLE+GP  +N
Subjt:  --YVMEVFTFGRSGTNRWKHLDCLPFIIYTDGAYLNGVIYWMGQ--VKQDEFLIYALDVETEKIEFIATLEVGPNSRN

SwissProt top hitse value%identityAlignment
Q9C629 Putative F-box protein At1g468401.9e-0527.73Show/hide
Query:  ILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNLKYVMEVFTFGRSGTNRWKHLDCLPFII-----YTDGAYLNGVIYWMGQVK
        I NP T +   +  L  E ++     F + P  K +K+   +   +     Y  +V T G +G   W++++C PF+         G  +NGV+Y++G +K
Subjt:  ILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNLKYVMEVFTFGRSGTNRWKHLDCLPFII-----YTDGAYLNGVIYWMGQVK

Query:  QDEFLIYALDVETEKIEFI
            +I   DV +EK  FI
Subjt:  QDEFLIYALDVETEKIEFI

Q9LMB0 Putative F-box protein At1g191601.6e-0429.71Show/hide
Query:  SSIEIRNYC-----NGLMFVIKDRYRAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNLKYVMEVFTFGRSGTNRWKHLDC
        ++I+  +YC     NGL+  ++  +R  I NP+T +          +  +  +  G+ P    YK+   S  RE     Y++EVFTFG  G+ R    D 
Subjt:  SSIEIRNYC-----NGLMFVIKDRYRAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNLKYVMEVFTFGRSGTNRWKHLDC

Query:  LPFIIYTDGAYLNGVIYWMGQVKQDEFLIYALDVETEK
              T G   +GV+Y+ G    D   I   DV TEK
Subjt:  LPFIIYTDGAYLNGVIYWMGQVKQDEFLIYALDVETEK

Arabidopsis top hitse value%identityAlignment
AT1G19160.1 F-box family protein1.2e-0529.71Show/hide
Query:  SSIEIRNYC-----NGLMFVIKDRYRAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNLKYVMEVFTFGRSGTNRWKHLDC
        ++I+  +YC     NGL+  ++  +R  I NP+T +          +  +  +  G+ P    YK+   S  RE     Y++EVFTFG  G+ R    D 
Subjt:  SSIEIRNYC-----NGLMFVIKDRYRAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNLKYVMEVFTFGRSGTNRWKHLDC

Query:  LPFIIYTDGAYLNGVIYWMGQVKQDEFLIYALDVETEK
              T G   +GV+Y+ G    D   I   DV TEK
Subjt:  LPFIIYTDGAYLNGVIYWMGQVKQDEFLIYALDVETEK

AT1G46840.1 F-box family protein1.4e-0627.73Show/hide
Query:  ILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNLKYVMEVFTFGRSGTNRWKHLDCLPFII-----YTDGAYLNGVIYWMGQVK
        I NP T +   +  L  E ++     F + P  K +K+   +   +     Y  +V T G +G   W++++C PF+         G  +NGV+Y++G +K
Subjt:  ILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNLKYVMEVFTFGRSGTNRWKHLDCLPFII-----YTDGAYLNGVIYWMGQVK

Query:  QDEFLIYALDVETEKIEFI
            +I   DV +EK  FI
Subjt:  QDEFLIYALDVETEKIEFI

AT2G23160.1 F-box family protein4.9e-0425.17Show/hide
Query:  YCNGLMFVIKDRY--RAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSF--HREGTNLKYVMEVFTFGRSGTNRWKHLDC-LPFIIYT
        Y +GL+++  D    R+ I NP T E+  +  L   R       + F     + K FK  F  +  G     ++ V T    G  +W+ + C L + I +
Subjt:  YCNGLMFVIKDRY--RAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSF--HREGTNLKYVMEVFTFGRSGTNRWKHLDC-LPFIIYT

Query:  DGAYLNGVIYWMGQVK---------QDEFLIYALDVETEKIEF
        +G  +NGV+Y++G+           + ++ I   D+ +EK  F
Subjt:  DGAYLNGVIYWMGQVK---------QDEFLIYALDVETEKIEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTGTCTTGATAGTGATACGATGAGTTGTGTTGCGACATTTGAGTTTGATGACAATTGTTCAAGTATTGAAATTCGCAATTACTGCAATGGCTTGATGTTTGTTAT
TAAAGATCGTTATCGTGCCGGCATATTAAATCCAATGACTAATGAGTTCTTTAAAATTGGTGGACTTACATCTGAAAGATCGATATCTTGCAAATTTGGATTTGGTTTCT
GTCCTAAGACTAAATTGTACAAACTGTTTAAATTTTCCTTTCACCGTGAGGGGACAAATTTGAAGTACGTAATGGAAGTTTTCACGTTTGGTAGAAGTGGAACCAACCGG
TGGAAGCATCTGGACTGCTTGCCTTTTATCATCTACACTGACGGTGCTTACTTGAATGGAGTCATCTATTGGATGGGACAAGTAAAACAAGACGAGTTTTTGATTTATGC
TCTTGATGTTGAAACTGAAAAAATTGAATTCATTGCAACCTTAGAAGTTGGCCCTAACTCAAGAAACTATGTTCAACCAATCAAGGGTAAGTCTGTGGTTAAGTGGCAAA
TGATTCAGGATTCTCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATTGTCTTGATAGTGATACGATGAGTTGTGTTGCGACATTTGAGTTTGATGACAATTGTTCAAGTATTGAAATTCGCAATTACTGCAATGGCTTGATGTTTGTTAT
TAAAGATCGTTATCGTGCCGGCATATTAAATCCAATGACTAATGAGTTCTTTAAAATTGGTGGACTTACATCTGAAAGATCGATATCTTGCAAATTTGGATTTGGTTTCT
GTCCTAAGACTAAATTGTACAAACTGTTTAAATTTTCCTTTCACCGTGAGGGGACAAATTTGAAGTACGTAATGGAAGTTTTCACGTTTGGTAGAAGTGGAACCAACCGG
TGGAAGCATCTGGACTGCTTGCCTTTTATCATCTACACTGACGGTGCTTACTTGAATGGAGTCATCTATTGGATGGGACAAGTAAAACAAGACGAGTTTTTGATTTATGC
TCTTGATGTTGAAACTGAAAAAATTGAATTCATTGCAACCTTAGAAGTTGGCCCTAACTCAAGAAACTATGTTCAACCAATCAAGGGTAAGTCTGTGGTTAAGTGGCAAA
TGATTCAGGATTCTCATTAA
Protein sequenceShow/hide protein sequence
MHCLDSDTMSCVATFEFDDNCSSIEIRNYCNGLMFVIKDRYRAGILNPMTNEFFKIGGLTSERSISCKFGFGFCPKTKLYKLFKFSFHREGTNLKYVMEVFTFGRSGTNR
WKHLDCLPFIIYTDGAYLNGVIYWMGQVKQDEFLIYALDVETEKIEFIATLEVGPNSRNYVQPIKGKSVVKWQMIQDSH