; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G003670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G003670
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptiontranscription factor RADIALIS-like
Genome locationchr10:5673126..5680589
RNA-Seq ExpressionLsi10G003670
SyntenyLsi10G003670
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571113.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]2.6e-3887.63Show/hide
Query:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTS-ASAPGTSNGNINDQEQR
        MAS+ SSSHHS+SWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFDLLVEDVKHIESG VPFPNY+S AS  GTSN NINDQEQR
Subjt:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTS-ASAPGTSNGNINDQEQR

KAG6571117.1 Protein RADIALIS-like 2, partial [Cucurbita argyrosperma subsp. sororia]1.5e-3886.73Show/hide
Query:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTS-ASAPGTSNGNINDQEQRL
        MAS+ SSSHHS+SWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFDLLVEDVKHIESG VPFPNY+S AS  GTSN NINDQEQR+
Subjt:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTS-ASAPGTSNGNINDQEQRL

XP_022944318.1 protein RADIALIS-like 2 [Cucurbita moschata]5.8e-3885.71Show/hide
Query:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTS-ASAPGTSNGNINDQEQRL
        MAS+ +SSH S+SWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFDLLVEDVKHIESG VPFPNY+S ASA GTSN NINDQEQR+
Subjt:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTS-ASAPGTSNGNINDQEQRL

XP_022986646.1 protein RADIALIS-like 2 [Cucurbita maxima]3.4e-3885.71Show/hide
Query:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTS-ASAPGTSNGNINDQEQRL
        MAS+ SSSHHS+SWTP +NKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFDLLVEDVKHIE G VPFPNY+S ASA GTSN NINDQEQR+
Subjt:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTS-ASAPGTSNGNINDQEQRL

XP_038902123.1 protein RADIALIS-like 2 [Benincasa hispida]3.6e-4089.8Show/hide
Query:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTS-NGNINDQEQRL
        MASI SSSH S SWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKT DEVKRHFDLLVEDVKHIESGRVPFPNYTS S P TS NGN+NDQEQR+
Subjt:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTS-NGNINDQEQRL

TrEMBL top hitse value%identityAlignment
A0A0A0LL58 MYB transcription factor MYB1421.8e-3785.71Show/hide
Query:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYT-SASAPGTSNGNINDQEQRL
        MASISSS   S+SWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFD LVEDVKHIESGRVPFP YT S+S+P TSN NI DQEQR+
Subjt:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYT-SASAPGTSNGNINDQEQRL

A0A1S3CDK8 protein RADIALIS-like 24.8e-3884.62Show/hide
Query:  MASISSSSHH--STSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYT----SASAPGT-SNGNINDQ
        MASISSSSH   S+SWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD LVEDVKHIESGRVPFP YT    S+SAP T SN NI DQ
Subjt:  MASISSSSHH--STSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYT----SASAPGT-SNGNINDQ

Query:  EQRL
        EQR+
Subjt:  EQRL

A0A6J1CYR5 protein RADIALIS-like 21.6e-3381.52Show/hide
Query:  SSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQRL
        SS   S SWTPNQNKAFERALAVFDKDTPDRW NVANAV GGKT DEVKRHFDLLVEDVKHIESGR+PFPNYT A+  G+SNGN+ND+E+R+
Subjt:  SSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQRL

A0A6J1FXX9 protein RADIALIS-like 22.8e-3885.71Show/hide
Query:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTS-ASAPGTSNGNINDQEQRL
        MAS+ +SSH S+SWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFDLLVEDVKHIESG VPFPNY+S ASA GTSN NINDQEQR+
Subjt:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTS-ASAPGTSNGNINDQEQRL

A0A6J1JBS7 protein RADIALIS-like 21.6e-3885.71Show/hide
Query:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTS-ASAPGTSNGNINDQEQRL
        MAS+ SSSHHS+SWTP +NKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFDLLVEDVKHIE G VPFPNY+S ASA GTSN NINDQEQR+
Subjt:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTS-ASAPGTSNGNINDQEQRL

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 15.8e-2557.73Show/hide
Query:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQRL
        MAS S SS  S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++LLV+D+  IE+G VPFPNY ++   G +NG ++ +E+R+
Subjt:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQRL

Q1A173 Protein RADIALIS-like 63.5e-2256.86Show/hide
Query:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQRLLSR
        MAS S SS   + WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D+LVED+ +IE+GRVP PNY +     +++ +IND + R +  
Subjt:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQRLLSR

Query:  FR
         +
Subjt:  FR

Q58FS3 Transcription factor RADIALIS3.2e-2355.91Show/hide
Query:  ISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQR
        ++S+      W+  +NKAFERALAV+DKDTPDRW NVA AV  G+TP+EVK+H+++LVED+K+IESG+VPFPNY       T+ GN+   E+R
Subjt:  ISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQR

Q8GW75 Protein RADIALIS-like 54.6e-2256.12Show/hide
Query:  SSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQRLLSRFR
        SSS   S+SWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D+LVED+ +IE   VP P Y +      S G I+D + RL+   R
Subjt:  SSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQRLLSRFR

Q9SIJ5 Protein RADIALIS-like 29.0e-2662Show/hide
Query:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSN-GNINDQEQRLLS
        MAS S SS+ S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +DLLV D++ IE+G VPFP+Y + +  G SN G + D+E+R+ S
Subjt:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSN-GNINDQEQRLLS

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 53.3e-2356.12Show/hide
Query:  SSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQRLLSRFR
        SSS   S+SWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D+LVED+ +IE   VP P Y +      S G I+D + RL+   R
Subjt:  SSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQRLLSRFR

AT1G75250.1 RAD-like 66.6e-2457.43Show/hide
Query:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQRLLSR
        MAS S SS   + WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D+LVED+ +IE+GRVP PNY +     +++ +IND + R +++
Subjt:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQRLLSR

Query:  F
        +
Subjt:  F

AT1G75250.2 RAD-like 62.5e-2356.86Show/hide
Query:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQRLLSR
        MAS S SS   + WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D+LVED+ +IE+GRVP PNY +     +++ +IND + R +  
Subjt:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQRLLSR

Query:  FR
         +
Subjt:  FR

AT2G21650.1 Homeodomain-like superfamily protein6.4e-2762Show/hide
Query:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSN-GNINDQEQRLLS
        MAS S SS+ S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +DLLV D++ IE+G VPFP+Y + +  G SN G + D+E+R+ S
Subjt:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSN-GNINDQEQRLLS

AT4G39250.1 RAD-like 14.2e-2657.73Show/hide
Query:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQRL
        MAS S SS  S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++LLV+D+  IE+G VPFPNY ++   G +NG ++ +E+R+
Subjt:  MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATCTCCTCATCCTCTCATCACTCTACCTCTTGGACTCCCAACCAAAACAAAGCCTTTGAAAGGGCCTTGGCTGTTTTTGACAAAGATACCCCTGATCGTTG
GCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCCGACGAAGTCAAGAGACATTTCGACCTTCTCGTCGAAGATGTCAAACACATTGAATCCGGCCGCGTTCCTT
TCCCTAACTACACCTCCGCCTCCGCCCCCGGTACCTCCAATGGCAACATCAATGACCAAGAACAAAGGCTGTTGTCAAGATTCAGATCCCACTGCTGCATGACTATCAAC
AATAGCATTCTTGCGGAGGTTCACTTAGCTATTGGTGCAAGGTCATTAGACACCCAACTTACTTTGAATTTAGGTGTCGTCGGGCGTGGGTTGGTGAACGTAGAGAGAGA
TCGAAAAGGTCAGAGGCGTGCGGCTGAGAGACGGGTCGTGTGGGCTGGCCGGAGCTGGTGTGGCCGGAGAAGAAAAGCAAACTGA
mRNA sequenceShow/hide mRNA sequence
CCTAAGTAGACAAATCATTCAAAAATTTTCTCACTCTCCCTTTTTGCAAGATTTCCTCTGCCAACTATCTCTTTGGTCCCACTCCCTTCTTATAAAATCCCTTCCTTCTC
CAAAACCCTTTCTTCCTCACCTTTTACCATTTTTGCCCCTCAACAATGGCTTCCATCTCCTCATCCTCTCATCACTCTACCTCTTGGACTCCCAACCAAAACAAAGCCTT
TGAAAGGGCCTTGGCTGTTTTTGACAAAGATACCCCTGATCGTTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCCGACGAAGTCAAGAGACATTTCGACC
TTCTCGTCGAAGATGTCAAACACATTGAATCCGGCCGCGTTCCTTTCCCTAACTACACCTCCGCCTCCGCCCCCGGTACCTCCAATGGCAACATCAATGACCAAGAACAA
AGGCTGTTGTCAAGATTCAGATCCCACTGCTGCATGACTATCAACAATAGCATTCTTGCGGAGGTTCACTTAGCTATTGGTGCAAGGTCATTAGACACCCAACTTACTTT
GAATTTAGGTGTCGTCGGGCGTGGGTTGGTGAACGTAGAGAGAGATCGAAAAGGTCAGAGGCGTGCGGCTGAGAGACGGGTCGTGTGGGCTGGCCGGAGCTGGTGTGGCC
GGAGAAGAAAAGCAAACTGA
Protein sequenceShow/hide protein sequence
MASISSSSHHSTSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPNYTSASAPGTSNGNINDQEQRLLSRFRSHCCMTIN
NSILAEVHLAIGARSLDTQLTLNLGVVGRGLVNVERDRKGQRRAAERRVVWAGRSWCGRRRKAN