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Lsi10G003700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G003700
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:5711594..5712564
RNA-Seq ExpressionLsi10G003700
SyntenyLsi10G003700
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040106.1 hypothetical protein E6C27_scaffold366G00810 [Cucumis melo var. makuwa]6.9e-0633.33Show/hide
Query:  GVRGKGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVVK
        G R +   W       LKLN+ +ACH ++ K G+G V+R+D RR++T  +L + G ++ + G + A +  L+       L   + MD E+VVK
Subjt:  GVRGKGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVVK

TYK21731.1 hypothetical protein E5676_scaffold859G001030 [Cucumis melo var. makuwa]1.1e-0634.41Show/hide
Query:  GVRGKGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVVK
        G R +   W       LKLN+ +ACH ++ K G+G V+R+D RR++T  +L + G ++ + G + A + GL+       L   + MD E+VVK
Subjt:  GVRGKGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVVK

XP_008229542.1 PREDICTED: uncharacterized protein LOC103328904 [Prunus mume]3.1e-0634.71Show/hide
Query:  RYIDDIVVVPRLSGVETCGVRGKGV--------HWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLA
        R+ DD+        VE   V    V        HWC PP G LKLN+D AC     K G+GAVVR+    ++ A ++   GC SAK  E+ A   GL+ A
Subjt:  RYIDDIVVVPRLSGVETCGVRGKGV--------HWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLA

Query:  EVHRCLGCWVKMDAEIVVKKI
                 V+ DA+  +  I
Subjt:  EVHRCLGCWVKMDAEIVVKKI

XP_019163573.1 PREDICTED: uncharacterized protein LOC109159918 [Ipomoea nil]4.1e-0639.29Show/hide
Query:  WCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVV
        W  PP G LKLNID + H  +S +GMG ++RD     + A + VRPG +S ++ E  A    L   + H   G  V+ DAEI++
Subjt:  WCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVV

XP_031091124.1 uncharacterized protein LOC115996122 [Ipomoea triloba]3.3e-0832.48Show/hide
Query:  PRLSGVETCGVRGKGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIV
        PR +G+ T        HWC P RG LKLN D+A H  N+ MG+G V+RDD  R + +  +  PG  +  + E F+    L   +        V+MD++IV
Subjt:  PRLSGVETCGVRGKGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIV

Query:  VKKIQIDCILPWFSIIV
           +     +  F ++V
Subjt:  VKKIQIDCILPWFSIIV

TrEMBL top hitse value%identityAlignment
A0A5A7TDE1 Uncharacterized protein3.4e-0633.33Show/hide
Query:  GVRGKGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVVK
        G R +   W       LKLN+ +ACH ++ K G+G V+R+D RR++T  +L + G ++ + G + A +  L+       L   + MD E+VVK
Subjt:  GVRGKGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVVK

A0A5D3DDI5 Uncharacterized protein5.2e-0734.41Show/hide
Query:  GVRGKGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVVK
        G R +   W       LKLN+ +ACH ++ K G+G V+R+D RR++T  +L + G ++ + G + A + GL+       L   + MD E+VVK
Subjt:  GVRGKGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVVK

A0A6J5XRX0 RNase H domain-containing protein2.8e-0544.78Show/hide
Query:  HWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLA
        HWC PP G LKLN+D AC     K G+G VVR+    +++A  +   GC SAK  E+ A   GL+ A
Subjt:  HWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLA

A0A803PBY3 Uncharacterized protein2.6e-0634.41Show/hide
Query:  KGVH-WCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVVKKIQ
        KG++ W  PP G   +N D A    +   G+ AV+RD+C R++ A A  + GCVS    E+ A I GL L +       +V  D    +K++Q
Subjt:  KGVH-WCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVVKKIQ

M5WZF6 RNase H domain-containing protein (Fragment)3.6e-0837.62Show/hide
Query:  KGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVVKKIQIDCILPWF
        K   W  PP G  KLN+D A  P     G+GAVVR+D   V+ A AL      S+K  EI AF+ G+K A    C    ++ D++ VV  ++ D    W 
Subjt:  KGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGLKLAEVHRCLGCWVKMDAEIVVKKIQIDCILPWF

Query:  S
        S
Subjt:  S

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAAAAAAGAAGTTTGGGCTCCCCTTGTGCCGATTGAGTGTAAGGTTAAATGGATCTCGAGGTACATTGATGATATTGTTGTTGTTCCTAGGCTATCAGGTGTGGA
GACTTGTGGTGTTCGTGGAAAGGGTGTGCACTGGTGTTTGCCACCACGTGGAGCTCTGAAATTAAATATCGACATTGCTTGTCATCCGGTGAACTCAAAGATGGGGATGG
GAGCTGTTGTGCGAGATGATTGTAGGAGAGTCATTACTGCCCATGCTCTTGTTCGTCCAGGTTGTGTATCAGCCAAAGATGGTGAAATTTTTGCTTTTATAGCTGGTTTG
AAGTTAGCTGAAGTTCACAGATGCTTAGGGTGTTGGGTGAAGATGGATGCTGAAATTGTGGTGAAGAAGATACAAATTGACTGTATTCTCCCTTGGTTCTCAATCATTGT
CGGGGCTGAGATGGGGGACTTGGATCTTATTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGATTAAAAAAGAAGTTTGGGCTCCCCTTGTGCCGATTGAGTGTAAGGTTAAATGGATCTCGAGGTACATTGATGATATTGTTGTTGTTCCTAGGCTATCAGGTGTGGA
GACTTGTGGTGTTCGTGGAAAGGGTGTGCACTGGTGTTTGCCACCACGTGGAGCTCTGAAATTAAATATCGACATTGCTTGTCATCCGGTGAACTCAAAGATGGGGATGG
GAGCTGTTGTGCGAGATGATTGTAGGAGAGTCATTACTGCCCATGCTCTTGTTCGTCCAGGTTGTGTATCAGCCAAAGATGGTGAAATTTTTGCTTTTATAGCTGGTTTG
AAGTTAGCTGAAGTTCACAGATGCTTAGGGTGTTGGGTGAAGATGGATGCTGAAATTGTGGTGAAGAAGATACAAATTGACTGTATTCTCCCTTGGTTCTCAATCATTGT
CGGGGCTGAGATGGGGGACTTGGATCTTATTGGATGA
Protein sequenceShow/hide protein sequence
MIKKEVWAPLVPIECKVKWISRYIDDIVVVPRLSGVETCGVRGKGVHWCLPPRGALKLNIDIACHPVNSKMGMGAVVRDDCRRVITAHALVRPGCVSAKDGEIFAFIAGL
KLAEVHRCLGCWVKMDAEIVVKKIQIDCILPWFSIIVGAEMGDLDLIG