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Lsi10G004200 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G004200
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionB-box zinc finger family protein
Genome locationchr10:6364840..6368982
RNA-Seq ExpressionLsi10G004200
SyntenyLsi10G004200
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009640 - photomorphogenesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000315 - B-box-type zinc finger


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9448278.1 hypothetical protein C3L33_19834, partial [Rhododendron williamsianum]8.8e-3049.41Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHA
        MRTLCD+CESAAA LFCAADEAALC SCD++VHMCNKLA RHV VGLAEP     ++   D+     AFFYC+IDGSSLCLQCDMIVHVGGKR     H 
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHA

Query:  KVLRGCNLQPDKSVMLARSFKQEPEKEYKVTSSGATEKTTSNLMANQTHPHRCT--FQAGRASSIWLVES
        + L           +L +  +   +K  ++   G        +  NQ H  R T   Q   ASS+ ++E+
Subjt:  KVLRGCNLQPDKSVMLARSFKQEPEKEYKVTSSGATEKTTSNLMANQTHPHRCT--FQAGRASSIWLVES

KAF2301940.1 hypothetical protein GH714_030571 [Hevea brasiliensis]8.0e-3159.85Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGK----RYPL
        MRTLCD+CESAAA LFCAADEAALCRSCD++VH+CNKLA RHV VGLA+P D    +   D+     AFFYC+IDGSSLCLQCDMIVHVGGK    RY L
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGK----RYPL

Query:  ------EPHAKVLRGCNLQPDKSVMLARSFKQEPEKE
              E    V+ G N     SV+   SFK+EP+ +
Subjt:  ------EPHAKVLRGCNLQPDKSVMLARSFKQEPEKE

KAF7143522.1 hypothetical protein RHSIM_Rhsim05G0068400 [Rhododendron simsii]8.8e-3049.41Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHA
        MRTLCD+CESAAA LFCAADEAALC SCD++VHMCNKLA RHV VGLAEP     ++   D+     AFFYC+IDGSSLCLQCDMIVHVGGKR     H 
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHA

Query:  KVLRGCNLQPDKSVMLARSFKQEPEKEYKVTSSGATEKTTSNLMANQTHPHRCT--FQAGRASSIWLVES
        + L           +L +  +   +K  ++   G        +  NQ H  R T   Q   ASS+ ++E+
Subjt:  KVLRGCNLQPDKSVMLARSFKQEPEKEYKVTSSGATEKTTSNLMANQTHPHRCT--FQAGRASSIWLVES

KAG5547830.1 hypothetical protein RHGRI_013496 [Rhododendron griersonianum]8.8e-3049.41Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHA
        MRTLCD+CESAAA LFCAADEAALC SCD++VHMCNKLA RHV VGLAEP     ++   D+     AFFYC+IDGSSLCLQCDMIVHVGGKR     H 
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHA

Query:  KVLRGCNLQPDKSVMLARSFKQEPEKEYKVTSSGATEKTTSNLMANQTHPHRCT--FQAGRASSIWLVES
        + L           +L +  +   +K  ++   G        +  NQ H  R T   Q   ASS+ ++E+
Subjt:  KVLRGCNLQPDKSVMLARSFKQEPEKEYKVTSSGATEKTTSNLMANQTHPHRCT--FQAGRASSIWLVES

PHT93528.1 B-box zinc finger protein 19 [Capsicum annuum]1.2e-2976.34Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKR
        MRTLCD+CESAAA LFCAADEAALCRSCDQ+VHMCNKLA RHV VGLA P      +Q  D+     AFFYC+IDGSSLCLQCDMIVHVGGKR
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKR

TrEMBL top hitse value%identityAlignment
A0A0V0HZU5 Putative salt tolerance-like protein-like5.6e-3075.27Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKR
        MRTLCD+CESAAA LFCAADEAALCRSCD++VHMCNKLA RHV VGLA+P      +Q  D+     AFFYC+IDGSSLCLQCDMIVHVGGKR
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKR

A0A6A4L069 Uncharacterized protein (Fragment)4.3e-3049.41Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHA
        MRTLCD+CESAAA LFCAADEAALC SCD++VHMCNKLA RHV VGLAEP     ++   D+     AFFYC+IDGSSLCLQCDMIVHVGGKR     H 
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHA

Query:  KVLRGCNLQPDKSVMLARSFKQEPEKEYKVTSSGATEKTTSNLMANQTHPHRCT--FQAGRASSIWLVES
        + L           +L +  +   +K  ++   G        +  NQ H  R T   Q   ASS+ ++E+
Subjt:  KVLRGCNLQPDKSVMLARSFKQEPEKEYKVTSSGATEKTTSNLMANQTHPHRCT--FQAGRASSIWLVES

A0A6A6LKK0 Uncharacterized protein3.9e-3159.85Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGK----RYPL
        MRTLCD+CESAAA LFCAADEAALCRSCD++VH+CNKLA RHV VGLA+P D    +   D+     AFFYC+IDGSSLCLQCDMIVHVGGK    RY L
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGK----RYPL

Query:  ------EPHAKVLRGCNLQPDKSVMLARSFKQEPEKE
              E    V+ G N     SV+   SFK+EP+ +
Subjt:  ------EPHAKVLRGCNLQPDKSVMLARSFKQEPEKE

M0ZTY6 Salt-tolerance protein5.6e-3075.27Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKR
        MRTLCD+CESAAA LFCAADEAALCRSCD++VHMCNKLA RHV VGLA+P      +Q  D+     AFFYC+IDGSSLCLQCDMIVHVGGKR
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKR

M0ZTY8 B-box zinc finger protein 215.6e-3075.27Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKR
        MRTLCD+CESAAA LFCAADEAALCRSCD++VHMCNKLA RHV VGLA+P      +Q  D+     AFFYC+IDGSSLCLQCDMIVHVGGKR
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKR

SwissProt top hitse value%identityAlignment
C0SVM5 B-box zinc finger protein 195.4e-3071.91Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDS-IFILQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKR
        MR LCD CE+AAA +FCAADEAALCR CD++VHMCNKLA RHV VGLAEP ++    +     AFFYC+IDGSSLCLQCDM+VHVGGKR
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDS-IFILQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKR

Q96288 B-box zinc finger protein 246.6e-1243.01Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAE-----PRDSIFILQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKR
        M+  CD+CE A AT+ C ADEAALC  CD E+H  NKLA +H  + L       PR  I        AF +C  D + LC  CD  +HV   R
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAE-----PRDSIFILQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKR

Q9LQZ7 B-box zinc finger protein 218.6e-1234.78Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHA
        M+  CD+C+   A++FC ADEA+LC  CD +VH  NKLA +H+   L  P  S       D+     A  +C  D + LC  CD  +H   +    + H 
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDV-----AFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHA

Query:  K-VLRGCNLQPDKSV
        + +L G  L    SV
Subjt:  K-VLRGCNLQPDKSV

Q9SJU5 B-box zinc finger protein 181.0e-2871.11Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRD--SIFILQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKR
        MR LCD CESAAA +FCAADEAALC SCD++VH CNKLA RH+ VGLA+P +  S  I +    AFFYC+IDGSSLCLQCDM+VHVGGKR
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRD--SIFILQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKR

Q9SYM2 B-box zinc finger protein 222.3e-1243.53Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDVA--FFYCDIDGSSLCLQCDMIVH
        M+  C++CE+A AT+ C ADEAALC +CD+++H  NKLA +H  V L+    SI        A  FF+C  D + LC +CD+ +H
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDVA--FFYCDIDGSSLCLQCDMIVH

Arabidopsis top hitse value%identityAlignment
AT1G78600.1 light-regulated zinc finger protein 11.6e-1343.53Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDVA--FFYCDIDGSSLCLQCDMIVH
        M+  C++CE+A AT+ C ADEAALC +CD+++H  NKLA +H  V L+    SI        A  FF+C  D + LC +CD+ +H
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDVA--FFYCDIDGSSLCLQCDMIVH

AT2G21320.1 B-box zinc finger family protein7.2e-3071.11Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRD--SIFILQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKR
        MR LCD CESAAA +FCAADEAALC SCD++VH CNKLA RH+ VGLA+P +  S  I +    AFFYC+IDGSSLCLQCDM+VHVGGKR
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRD--SIFILQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKR

AT4G38960.1 B-box type zinc finger family protein3.8e-3171.91Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDS-IFILQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKR
        MR LCD CE+AAA +FCAADEAALCR CD++VHMCNKLA RHV VGLAEP ++    +     AFFYC+IDGSSLCLQCDM+VHVGGKR
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDS-IFILQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKR

AT4G38960.2 B-box type zinc finger family protein2.2e-1569.64Show/hide
Query:  MCNKLARRHVCVGLAEPRDS-IFILQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKR
        MCNKLA RHV VGLAEP ++    +     AFFYC+IDGSSLCLQCDM+VHVGGKR
Subjt:  MCNKLARRHVCVGLAEPRDS-IFILQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKR

AT4G38960.3 B-box type zinc finger family protein7.0e-2548.48Show/hide
Query:  MRTLCDICESAAATLFCAADEAALCRSCDQE-------------------------------------------VHMCNKLARRHVCVGLAEPRDS-IFI
        MR LCD CE+AAA +FCAADEAALCR CD++                                           VHMCNKLA RHV VGLAEP ++    
Subjt:  MRTLCDICESAAATLFCAADEAALCRSCDQE-------------------------------------------VHMCNKLARRHVCVGLAEPRDS-IFI

Query:  LQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKR
        +     AFFYC+IDGSSLCLQCDM+VHVGGKR
Subjt:  LQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAACTCTTTGCGATATCTGTGAGAGCGCCGCCGCAACCCTCTTCTGCGCCGCCGACGAGGCCGCCCTTTGCCGCTCCTGCGATCAGGAGGTTCACATGTGTAACAA
ACTTGCTAGGAGACATGTTTGTGTTGGACTGGCTGAACCCCGCGATAGTATCTTTATTCTTCAAACAACGGATGTAGCTTTCTTTTACTGTGATATAGATGGTAGCTCCC
TATGCTTGCAATGTGATATGATTGTTCATGTTGGAGGCAAAAGATACCCACTTGAACCGCATGCAAAAGTTCTTCGTGGGTGTAATCTACAACCTGATAAGAGTGTGATG
CTTGCAAGATCCTTCAAACAAGAACCTGAAAAAGAATACAAAGTAACTTCCAGTGGAGCTACAGAAAAGACTACAAGCAACTTAATGGCAAATCAAACTCACCCTCACCG
GTGTACTTTCCAAGCTGGGCGAGCGAGTTCGATTTGGCTCGTTGAATCAGAGCATCCTGTGCTGCCTTCACATTCTCTGGCCGGCCACCCCATGTCTTCAAGCAGAGCTC
TGGCATATGAGAAGGACACATGCCATGGGTTTGGTGCTTGGTTCATGGCGTTCAAGTTCAATGTAGCCTCTACCTCAGATTGCCCACCTGATAAAAACTGTTCCACAACA
ACAAAAACAACCCAGATTCAGTTCATCATTCATCAAGGAACAGCTGGAGGGATTCTTCTTTGGAGAAGAGACAGAGTGTACTTTGCAACTGTCTCAGGGCTTGCTCTGTC
TTTGCTTTCAGCTCCAGGAAAGAAGACCTCTGCCCAAACTTTCTGTGCTACCTCAAAGGTTCTGTCAATTCCGTGCTCTCCGTCCAGCAAGATCTCTGGCTCCACGATTG
GAACCAACCCATTGTCCTGCAAATTGCAACACCCCAATCCAAAATCAAAATCAAGGGACCTTAAATCAAATGGGGTTTCCTTAAAAGATAAGGAGTTTGATTTGTTGAGA
CCTGGGAGACGGCAGCATAGCGAGCAAGTCCCCAGGCAGCTTCCT
mRNA sequenceShow/hide mRNA sequence
ATTAATTTCAAAAGTTGAGGGCCAAAATATTTTTTTCAACCCAAAAAAAACTGTATTTGTTGTATCCATTGATTCGAGAGTAAAAAAGATAAGTCATAAGTCAACAAAGA
TGACCGGAGAAGGAAGGATTTTACGCCGTCGTCGTGTCAACGTCGACGATTCAGGCTGCTAATGCGAACTCTTTGCGATATCTGTGAGAGCGCCGCCGCAACCCTCTTCT
GCGCCGCCGACGAGGCCGCCCTTTGCCGCTCCTGCGATCAGGAGGTTCACATGTGTAACAAACTTGCTAGGAGACATGTTTGTGTTGGACTGGCTGAACCCCGCGATAGT
ATCTTTATTCTTCAAACAACGGATGTAGCTTTCTTTTACTGTGATATAGATGGTAGCTCCCTATGCTTGCAATGTGATATGATTGTTCATGTTGGAGGCAAAAGATACCC
ACTTGAACCGCATGCAAAAGTTCTTCGTGGGTGTAATCTACAACCTGATAAGAGTGTGATGCTTGCAAGATCCTTCAAACAAGAACCTGAAAAAGAATACAAAGTAACTT
CCAGTGGAGCTACAGAAAAGACTACAAGCAACTTAATGGCAAATCAAACTCACCCTCACCGGTGTACTTTCCAAGCTGGGCGAGCGAGTTCGATTTGGCTCGTTGAATCA
GAGCATCCTGTGCTGCCTTCACATTCTCTGGCCGGCCACCCCATGTCTTCAAGCAGAGCTCTGGCATATGAGAAGGACACATGCCATGGGTTTGGTGCTTGGTTCATGGC
GTTCAAGTTCAATGTAGCCTCTACCTCAGATTGCCCACCTGATAAAAACTGTTCCACAACAACAAAAACAACCCAGATTCAGTTCATCATTCATCAAGGAACAGCTGGAG
GGATTCTTCTTTGGAGAAGAGACAGAGTGTACTTTGCAACTGTCTCAGGGCTTGCTCTGTCTTTGCTTTCAGCTCCAGGAAAGAAGACCTCTGCCCAAACTTTCTGTGCT
ACCTCAAAGGTTCTGTCAATTCCGTGCTCTCCGTCCAGCAAGATCTCTGGCTCCACGATTGGAACCAACCCATTGTCCTGCAAATTGCAACACCCCAATCCAAAATCAAA
ATCAAGGGACCTTAAATCAAATGGGGTTTCCTTAAAAGATAAGGAGTTTGATTTGTTGAGACCTGGGAGACGGCAGCATAGCGAGCAAGTCCCCAGGCAGCTTCCT
Protein sequenceShow/hide protein sequence
MRTLCDICESAAATLFCAADEAALCRSCDQEVHMCNKLARRHVCVGLAEPRDSIFILQTTDVAFFYCDIDGSSLCLQCDMIVHVGGKRYPLEPHAKVLRGCNLQPDKSVM
LARSFKQEPEKEYKVTSSGATEKTTSNLMANQTHPHRCTFQAGRASSIWLVESEHPVLPSHSLAGHPMSSSRALAYEKDTCHGFGAWFMAFKFNVASTSDCPPDKNCSTT
TKTTQIQFIIHQGTAGGILLWRRDRVYFATVSGLALSLLSAPGKKTSAQTFCATSKVLSIPCSPSSKISGSTIGTNPLSCKLQHPNPKSKSRDLKSNGVSLKDKEFDLLR
PGRRQHSEQVPRQLP