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Lsi10G004420 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G004420
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionauxin-responsive protein SAUR24-like
Genome locationchr10:6587354..6587647
RNA-Seq ExpressionLsi10G004420
SyntenyLsi10G004420
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022944365.1 auxin-responsive protein SAUR24-like [Cucurbita moschata]1.1e-4695.88Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA
        MGIR LSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEE+FGFHHPQGGLTIPCKEDAF+DLTSRLQV+
Subjt:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA

XP_022944366.1 auxin-responsive protein SAUR24-like [Cucurbita moschata]2.5e-4694.85Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA
        MGIR LSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQQLLSHAEE+FGFHHPQGGLTIPCKEDAF+DLTSRLQV+
Subjt:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA

XP_022947574.1 auxin-responsive protein SAUR21-like [Cucurbita moschata]3.2e-4695.88Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA
        MGIRLLSLVPHAKQILKMQS FTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQ+LLSHAEEEFGFHHPQGGLTIPC+EDAFVDLTSRLQV+
Subjt:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA

XP_023512611.1 auxin-responsive protein SAUR24-like [Cucurbita pepo subsp. pepo]2.5e-4694.85Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA
        MGIR LSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLL+HAEE+FGFHHPQGGLTIPCKEDAF+DLTSRLQV+
Subjt:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA

XP_023533292.1 auxin-responsive protein SAUR24-like [Cucurbita pepo subsp. pepo]2.5e-4695.88Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA
        MGIRLLSLVPHAKQILKMQSGFTK+QLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQ+LLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQV+
Subjt:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA

TrEMBL top hitse value%identityAlignment
A0A6J1FU83 auxin-responsive protein SAUR24-like1.2e-4694.85Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA
        MGIR LSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQQLLSHAEE+FGFHHPQGGLTIPCKEDAF+DLTSRLQV+
Subjt:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA

A0A6J1FVI4 auxin-responsive protein SAUR24-like5.4e-4795.88Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA
        MGIR LSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEE+FGFHHPQGGLTIPCKEDAF+DLTSRLQV+
Subjt:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA

A0A6J1G6T7 auxin-responsive protein SAUR24-like1.6e-4694.85Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA
        MGIRLLSLVPHAKQILKMQSGFTK+QLDVPKGHVAVYVGEIQRKRF+VPISYLNHPSFQ+LLSHAEEEFGFHHPQGGLTIPCKEDAF+DLTSRLQV+
Subjt:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA

A0A6J1G772 auxin-responsive protein SAUR21-like1.6e-4695.88Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA
        MGIRLLSLVPHAKQILKMQS FTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQ+LLSHAEEEFGFHHPQGGLTIPC+EDAFVDLTSRLQV+
Subjt:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA

A0A6J1JHE3 auxin-responsive protein SAUR24-like5.4e-4795.88Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA
        MGIR LSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEE+FGFHHPQGGLTIPCKEDAF+DLTSRLQV+
Subjt:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA

SwissProt top hitse value%identityAlignment
Q9FJF6 Auxin-responsive protein SAUR231.2e-2272.31Show/hide
Query:  PKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRL
        PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +EEEFGF HP GGLTIPC ED F+++TSRL
Subjt:  PKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRL

Q9FJF7 Auxin-responsive protein SAUR226.8e-2371.21Show/hide
Query:  PKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQ
        PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +E+EFGF HP GGLTIPC ED F+++TSRLQ
Subjt:  PKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQ

Q9FJF9 Auxin-responsive protein SAUR211.2e-2271.21Show/hide
Query:  PKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQ
        PKG +AVYVGE Q+KR++VP+SYL+ PSFQ LLS +EEEFGF HP GGLTIPC ED F+++TSRLQ
Subjt:  PKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQ

Q9FJG0 Auxin-responsive protein SAUR203.1e-2364.56Show/hide
Query:  KMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQ
        K+ S  T      PKG +AVYVGE Q+KR++VPISYLN PSFQ LLS +EEEFGF HP GGLTIPC ED F+++TSR Q
Subjt:  KMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQ

Q9FK62 Auxin-responsive protein SAUR246.2e-2463.1Show/hide
Query:  AKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQ
        AK+IL   +G        PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +EEEFGF HP GGLTIPC ED F+++TSRLQ
Subjt:  AKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQ

Arabidopsis top hitse value%identityAlignment
AT2G21210.1 SAUR-like auxin-responsive protein family4.7e-2757.14Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGE-IQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA
        M IR+  ++  +KQ+LK  S  + N + +PKGH+AVYVGE +Q++RFVVP++YL+HP FQ+LL  AEEEFGF HP GGLTIPC E  F+DL SRL  +
Subjt:  MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGE-IQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA

AT4G34790.1 SAUR-like auxin-responsive protein family5.7e-2554.63Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGFTKNQLD-----------VPKGHVAVYVGE-IQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFV
        MG+ + S++P+AKQI K QS   KN              VPKGHVAVYVGE +++KRFVVPISYLNHP F++ L+ AEEE GFHH  GGLTIPC+E++F+
Subjt:  MGIRLLSLVPHAKQILKMQSGFTKNQLD-----------VPKGHVAVYVGE-IQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFV

Query:  DLTSRLQV
         L +  Q+
Subjt:  DLTSRLQV

AT4G34810.1 SAUR-like auxin-responsive protein family3.6e-2758.1Show/hide
Query:  MGIRLLSLVPHAKQILKMQSGFTKNQLD------VPKGHVAVYVG---EIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDL-
        MG+   ++    KQILK+ S   +N+        VPKGHVAVYVG   E+++KRFVVPIS+LNHPSF++ LS AEEEFGF+HP GGLTIPC+E+ F+DL 
Subjt:  MGIRLLSLVPHAKQILKMQSGFTKNQLD------VPKGHVAVYVG---EIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDL-

Query:  TSRLQ
         SRLQ
Subjt:  TSRLQ

AT4G38840.1 SAUR-like auxin-responsive protein family4.7e-2758.76Show/hide
Query:  MGIRLLSLVPHAKQILK----MQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSR
        M IR+  ++  +KQIL+    + S  + + LDVPKG++AVYVGE   KRFVVP+SYL+ PSFQ LL  AEEEFGF HP GGLTIPC E+ F+DL SR
Subjt:  MGIRLLSLVPHAKQILK----MQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSR

AT5G18080.1 SAUR-like auxin-responsive protein family4.4e-2563.1Show/hide
Query:  AKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQ
        AK+IL   +G        PKG +AVYVGE Q+KR++VP+SYLN PSFQ LLS +EEEFGF HP GGLTIPC ED F+++TSRLQ
Subjt:  AKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATTCGATTGCTATCTTTGGTTCCTCATGCCAAGCAAATCTTGAAGATGCAGTCAGGTTTTACCAAAAACCAACTGGATGTTCCAAAAGGCCATGTGGCA
GTTTACGTGGGAGAGATTCAAAGGAAGCGGTTTGTGGTTCCGATATCTTACTTAAACCATCCGTCGTTCCAGCAACTGCTCAGCCATGCAGAGGAAGAGTTTGGC
TTCCATCATCCACAGGGAGGCCTAACAATTCCTTGCAAAGAAGATGCCTTTGTAGATCTCACTTCTAGATTGCAAGTAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGATTCGATTGCTATCTTTGGTTCCTCATGCCAAGCAAATCTTGAAGATGCAGTCAGGTTTTACCAAAAACCAACTGGATGTTCCAAAAGGCCATGTGGCA
GTTTACGTGGGAGAGATTCAAAGGAAGCGGTTTGTGGTTCCGATATCTTACTTAAACCATCCGTCGTTCCAGCAACTGCTCAGCCATGCAGAGGAAGAGTTTGGC
TTCCATCATCCACAGGGAGGCCTAACAATTCCTTGCAAAGAAGATGCCTTTGTAGATCTCACTTCTAGATTGCAAGTAGCTTGA
Protein sequenceShow/hide protein sequence
MGIRLLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQRKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPQGGLTIPCKEDAFVDLTSRLQVA