; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G004540 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G004540
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr10:6629169..6639960
RNA-Seq ExpressionLsi10G004540
SyntenyLsi10G004540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571061.1 hypothetical protein SDJN03_29976, partial [Cucurbita argyrosperma subsp. sororia]2.4e-0833.77Show/hide
Query:  MKASSLHGIDKPPIGWQNPNSSSDLLSKSTKEGCFNRFPYLEAGSIGEAISSCKEVQSQGYVGLFLQAICFDVLFHWTSMQVVAHISNTHGAKRKDEMGM
        MKASSL G+ KPP+GW NPNSSS LLSK T EG FN                                                                
Subjt:  MKASSLHGIDKPPIGWQNPNSSSDLLSKSTKEGCFNRFPYLEAGSIGEAISSCKEVQSQGYVGLFLQAICFDVLFHWTSMQVVAHISNTHGAKRKDEMGM

Query:  ENSCELTKSCIVVIAGLAVRFMKASSLHRIVKPPIGWQNPNSSSDLLSRSTKEG
                        L V  MKASSL  +V PP+GW NPNSSS LLS+S  EG
Subjt:  ENSCELTKSCIVVIAGLAVRFMKASSLHRIVKPPIGWQNPNSSSDLLSRSTKEG
KAG6605012.1 hypothetical protein SDJN03_02329, partial [Cucurbita argyrosperma subsp. sororia]4.7e-1279.17Show/hide
Query:  IVVIAGLAVRFMKASSLHRIVKPPIGWQNPNSSSDLLSRSTKEGCFKI
        ++ I GL VRF KASSLH IVKPPIGWQNPNSSSDLLS+STKEGCF +
Subjt:  IVVIAGLAVRFMKASSLHRIVKPPIGWQNPNSSSDLLSRSTKEGCFKI
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACGATGATCAATCCAATCGAAGAAGCCCAAACTATCTGCCCTAAACTCGGTTTGCTGCCACTTTCTGAACAAAATCAATTCAAATCAAGACCTGAAAAA
AAAAGCCTAGCAGTGAGATTTATGAAAGCATCTTCTCTGCACGGAATTGACAAGCCGCCCATTGGATGGCAAAATCCAAATTCTTCTTCTGATCTATTGAGCAAA
TCTACAAAAGAAGGATGCTTCAATCGCTTCCCTTACCTAGAAGCTGGGTCCATTGGTGAAGCAATTTCCTCTTGCAAAGAGGTCCAATCACAAGGATATGTTGGC
TTGTTTTTACAAGCCATCTGTTTTGATGTGTTATTCCACTGGACAAGCATGCAAGTTGTGGCACACATATCCAACACACATGGAGCCAAGAGGAAGGATGAGATG
GGAATGGAAAATTCTTGTGAGCTGACAAAGTCATGCATTGTGGTGATAGCAGGCCTAGCAGTGAGATTTATGAAAGCATCTTCCCTGCACAGAATCGTCAAGCCG
CCCATTGGATGGCAAAATCCAAATTCTTCTTCTGACCTATTGAGCAGATCTACAAAAGAAGGATGCTTCAAAATCTGCTTGGCATTAAGAAGAATCGATGGCAAA
CGGATTCCCATGTCGAAAATTTATGCTAAACAAGAGAAGGGAACTGAAGAGGAGAACAAAAAGAGTATACCTGATAGGAGTCGTGGACCTACTTCCTCAGAGGCT
CACATGGGCTTGCTTTATCCATTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACGATGATCAATCCAATCGAAGAAGCCCAAACTATCTGCCCTAAACTCGGTTTGCTGCCACTTTCTGAACAAAATCAATTCAAATCAAGACCTGAAAAA
AAAAGCCTAGCAGTGAGATTTATGAAAGCATCTTCTCTGCACGGAATTGACAAGCCGCCCATTGGATGGCAAAATCCAAATTCTTCTTCTGATCTATTGAGCAAA
TCTACAAAAGAAGGATGCTTCAATCGCTTCCCTTACCTAGAAGCTGGGTCCATTGGTGAAGCAATTTCCTCTTGCAAAGAGGTCCAATCACAAGGATATGTTGGC
TTGTTTTTACAAGCCATCTGTTTTGATGTGTTATTCCACTGGACAAGCATGCAAGTTGTGGCACACATATCCAACACACATGGAGCCAAGAGGAAGGATGAGATG
GGAATGGAAAATTCTTGTGAGCTGACAAAGTCATGCATTGTGGTGATAGCAGGCCTAGCAGTGAGATTTATGAAAGCATCTTCCCTGCACAGAATCGTCAAGCCG
CCCATTGGATGGCAAAATCCAAATTCTTCTTCTGACCTATTGAGCAGATCTACAAAAGAAGGATGCTTCAAAATCTGCTTGGCATTAAGAAGAATCGATGGCAAA
CGGATTCCCATGTCGAAAATTTATGCTAAACAAGAGAAGGGAACTGAAGAGGAGAACAAAAAGAGTATACCTGATAGGAGTCGTGGACCTACTTCCTCAGAGGCT
CACATGGGCTTGCTTTATCCATTATAATTTCAGTCACTTTCTCACTGGCCCTACTTTTCCAATAACACGATGCCAAGAAAATTTCACCAAGCAACATGCCATGTG
ATACTTCCAATCCACAATATAAGTCCTCCATTAGTGGACATATTGCTGTGGCTGAGAGTACACTGGTGGACGTGATATGCATTAACTCAACAAACCAAGCTGTGA
ATCAAATGAAATGTGAGATCCTGATAGGATATGATTTAATGGATTTGGTACATGTGAAGCTGGGTCCATTGATGAAACAATTTCGTTTTGCAAGGAGGTCCAATC
ACAAGGATATGTTGGCTTGTTTTTTCATTTTCCTTACAAAGCCATCTGTTTTGATGTGTTACTCCACTGGAACAAGCATGATGTTGTTTGGAAATTGAATTACAA
ATGGGCCTATAATTTAGCAAGTTATGCCATACATATCAAACACACAAGGGAGCCAAGAGGAAGGATGAGAGAAAATAGAAAATTCTTGTGAGCTGACGTGGTCAT
GGTATGTGGGCCCTCTAAGTTGTAAGCTCCTGACAACTTCTTTCCTCATAACTCTATAAATATAGATGATCCTAAATGAGTTTCAAGTACTATTTTGAACTCTGA
GATATCGTGATTCTACTTCGAACTTCTTCGAAATCAATCGAGGATAAACTTCATATTTATTTGTAGTCTCTTGATCATTGCAAATAGATTTAACAATGGAGACTC
ATTTGCCATCATCCCTGCTGCCTGCTGCCAAGCAAATTCTCAAGATGCAGTTAGGTTTTACCAAGTAGTCATGTTCCTAGAGGTCATGTTGGAGTACATGTGTGA
GATACCCACAAGAAGTAGAACCATCCTTCATTTCAACAACTACTGAACTGAGTAGAAGATCCGTTACCATCATCCACATGGAGGTCTAACAATTCCTTGCAAAGA
GGGTGCCTTCATCGATCTTACTTCTAGACTGCAACAATCTTGAAGGATAAAGATGATGGAATGGATATGAATCAATTTTTTACACATTTTTTTCTGCTGACTTGA
TTTCTTTCTAACTCCTGCTTGAATGTTGTGTAGAAAATTTTGGAATGTAATTGAGTTTCTTTGTTAGTGAA
Protein sequenceShow/hide protein sequence
MATMINPIEEAQTICPKLGLLPLSEQNQFKSRPEKKSLAVRFMKASSLHGIDKPPIGWQNPNSSSDLLSKSTKEGCFNRFPYLEAGSIGEAISSCKEVQSQGYVG
LFLQAICFDVLFHWTSMQVVAHISNTHGAKRKDEMGMENSCELTKSCIVVIAGLAVRFMKASSLHRIVKPPIGWQNPNSSSDLLSRSTKEGCFKICLALRRIDGK
RIPMSKIYAKQEKGTEEENKKSIPDRSRGPTSSEAHMGLLYPL