; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G004540 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G004540
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr10:6629169..6639960
RNA-Seq ExpressionLsi10G004540
SyntenyLsi10G004540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571061.1 hypothetical protein SDJN03_29976, partial [Cucurbita argyrosperma subsp. sororia]2.4e-0833.77Show/hide
Query:  MKASSLHGIDKPPIGWQNPNSSSDLLSKSTKEGCFNRFPYLEAGSIGEAISSCKEVQSQGYVGLFLQAICFDVLFHWTSMQVVAHISNTHGAKRKDEMGM
        MKASSL G+ KPP+GW NPNSSS LLSK T EG FN                                                                
Subjt:  MKASSLHGIDKPPIGWQNPNSSSDLLSKSTKEGCFNRFPYLEAGSIGEAISSCKEVQSQGYVGLFLQAICFDVLFHWTSMQVVAHISNTHGAKRKDEMGM

Query:  ENSCELTKSCIVVIAGLAVRFMKASSLHRIVKPPIGWQNPNSSSDLLSRSTKEG
                        L V  MKASSL  +V PP+GW NPNSSS LLS+S  EG
Subjt:  ENSCELTKSCIVVIAGLAVRFMKASSLHRIVKPPIGWQNPNSSSDLLSRSTKEG
KAG6605012.1 hypothetical protein SDJN03_02329, partial [Cucurbita argyrosperma subsp. sororia]4.7e-1279.17Show/hide
Query:  IVVIAGLAVRFMKASSLHRIVKPPIGWQNPNSSSDLLSRSTKEGCFKI
        ++ I GL VRF KASSLH IVKPPIGWQNPNSSSDLLS+STKEGCF +
Subjt:  IVVIAGLAVRFMKASSLHRIVKPPIGWQNPNSSSDLLSRSTKEGCFKI
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACGATGATCAATCCAATCGAAGAAGCCCAAACTATCTGCCCTAAACTCGGTTTGCTGCCACTTTCTGAACAAAATCAATTCAAATCAAGACCTGAAAAAAAAAG
CCTAGCAGTGAGATTTATGAAAGCATCTTCTCTGCACGGAATTGACAAGCCGCCCATTGGATGGCAAAATCCAAATTCTTCTTCTGATCTATTGAGCAAATCTACAAAAG
AAGGATGCTTCAATCGCTTCCCTTACCTAGAAGCTGGGTCCATTGGTGAAGCAATTTCCTCTTGCAAAGAGGTCCAATCACAAGGATATGTTGGCTTGTTTTTACAAGCC
ATCTGTTTTGATGTGTTATTCCACTGGACAAGCATGCAAGTTGTGGCACACATATCCAACACACATGGAGCCAAGAGGAAGGATGAGATGGGAATGGAAAATTCTTGTGA
GCTGACAAAGTCATGCATTGTGGTGATAGCAGGCCTAGCAGTGAGATTTATGAAAGCATCTTCCCTGCACAGAATCGTCAAGCCGCCCATTGGATGGCAAAATCCAAATT
CTTCTTCTGACCTATTGAGCAGATCTACAAAAGAAGGATGCTTCAAAATCTGCTTGGCATTAAGAAGAATCGATGGCAAACGGATTCCCATGTCGAAAATTTATGCTAAA
CAAGAGAAGGGAACTGAAGAGGAGAACAAAAAGAGTATACCTGATAGGAGTCGTGGACCTACTTCCTCAGAGGCTCACATGGGCTTGCTTTATCCATTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACGATGATCAATCCAATCGAAGAAGCCCAAACTATCTGCCCTAAACTCGGTTTGCTGCCACTTTCTGAACAAAATCAATTCAAATCAAGACCTGAAAAAAAAAG
CCTAGCAGTGAGATTTATGAAAGCATCTTCTCTGCACGGAATTGACAAGCCGCCCATTGGATGGCAAAATCCAAATTCTTCTTCTGATCTATTGAGCAAATCTACAAAAG
AAGGATGCTTCAATCGCTTCCCTTACCTAGAAGCTGGGTCCATTGGTGAAGCAATTTCCTCTTGCAAAGAGGTCCAATCACAAGGATATGTTGGCTTGTTTTTACAAGCC
ATCTGTTTTGATGTGTTATTCCACTGGACAAGCATGCAAGTTGTGGCACACATATCCAACACACATGGAGCCAAGAGGAAGGATGAGATGGGAATGGAAAATTCTTGTGA
GCTGACAAAGTCATGCATTGTGGTGATAGCAGGCCTAGCAGTGAGATTTATGAAAGCATCTTCCCTGCACAGAATCGTCAAGCCGCCCATTGGATGGCAAAATCCAAATT
CTTCTTCTGACCTATTGAGCAGATCTACAAAAGAAGGATGCTTCAAAATCTGCTTGGCATTAAGAAGAATCGATGGCAAACGGATTCCCATGTCGAAAATTTATGCTAAA
CAAGAGAAGGGAACTGAAGAGGAGAACAAAAAGAGTATACCTGATAGGAGTCGTGGACCTACTTCCTCAGAGGCTCACATGGGCTTGCTTTATCCATTATAATTTCAGTC
ACTTTCTCACTGGCCCTACTTTTCCAATAACACGATGCCAAGAAAATTTCACCAAGCAACATGCCATGTGATACTTCCAATCCACAATATAAGTCCTCCATTAGTGGACA
TATTGCTGTGGCTGAGAGTACACTGGTGGACGTGATATGCATTAACTCAACAAACCAAGCTGTGAATCAAATGAAATGTGAGATCCTGATAGGATATGATTTAATGGATT
TGGTACATGTGAAGCTGGGTCCATTGATGAAACAATTTCGTTTTGCAAGGAGGTCCAATCACAAGGATATGTTGGCTTGTTTTTTCATTTTCCTTACAAAGCCATCTGTT
TTGATGTGTTACTCCACTGGAACAAGCATGATGTTGTTTGGAAATTGAATTACAAATGGGCCTATAATTTAGCAAGTTATGCCATACATATCAAACACACAAGGGAGCCA
AGAGGAAGGATGAGAGAAAATAGAAAATTCTTGTGAGCTGACGTGGTCATGGTATGTGGGCCCTCTAAGTTGTAAGCTCCTGACAACTTCTTTCCTCATAACTCTATAAA
TATAGATGATCCTAAATGAGTTTCAAGTACTATTTTGAACTCTGAGATATCGTGATTCTACTTCGAACTTCTTCGAAATCAATCGAGGATAAACTTCATATTTATTTGTA
GTCTCTTGATCATTGCAAATAGATTTAACAATGGAGACTCATTTGCCATCATCCCTGCTGCCTGCTGCCAAGCAAATTCTCAAGATGCAGTTAGGTTTTACCAAGTAGTC
ATGTTCCTAGAGGTCATGTTGGAGTACATGTGTGAGATACCCACAAGAAGTAGAACCATCCTTCATTTCAACAACTACTGAACTGAGTAGAAGATCCGTTACCATCATCC
ACATGGAGGTCTAACAATTCCTTGCAAAGAGGGTGCCTTCATCGATCTTACTTCTAGACTGCAACAATCTTGAAGGATAAAGATGATGGAATGGATATGAATCAATTTTT
TACACATTTTTTTCTGCTGACTTGATTTCTTTCTAACTCCTGCTTGAATGTTGTGTAGAAAATTTTGGAATGTAATTGAGTTTCTTTGTTAGTGAA
Protein sequenceShow/hide protein sequence
MATMINPIEEAQTICPKLGLLPLSEQNQFKSRPEKKSLAVRFMKASSLHGIDKPPIGWQNPNSSSDLLSKSTKEGCFNRFPYLEAGSIGEAISSCKEVQSQGYVGLFLQA
ICFDVLFHWTSMQVVAHISNTHGAKRKDEMGMENSCELTKSCIVVIAGLAVRFMKASSLHRIVKPPIGWQNPNSSSDLLSRSTKEGCFKICLALRRIDGKRIPMSKIYAK
QEKGTEEENKKSIPDRSRGPTSSEAHMGLLYPL