CuGenDBv2

Gene ID	Lsi10G004670
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Nucleoporin NUP188-like protein
Genome location	chr10:6740217..6753851
RNA-Seq Expression	Lsi10G004670
Synteny	Lsi10G004670
Gene Ontology terms	GO:0006913 - nucleocytoplasmic transport (biological process) GO:0015031 - protein transport (biological process) GO:0005643 - nuclear pore (cellular component) GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ADN34017.1 hypothetical protein [Cucumis melo subsp. melo]

4.5e-27

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Query:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE
        MA+STSVDSSLWWDPF P LTELENVSLSS ELPP LMKKMDDNHAWFV TVSLFKKPNEKSRVALDS E
Subjt:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE

KAA0045699.1 nucleoporin NUP188-like protein [Cucumis melo var. makuwa]

4.5e-27

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Query:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE
        MA+STSVDSSLWWDPF P LTELENVSLSS ELPP LMKKMDDNHAWFV TVSLFKKPNEKSRVALDS E
Subjt:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE

TYJ99584.1 DUF3414 domain-containing protein [Cucumis melo var. makuwa]

4.5e-27

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Query:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE
        MA+STSVDSSLWWDPF P LTELENVSLSS ELPP LMKKMDDNHAWFV TVSLFKKPNEKSRVALDS E
Subjt:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE

XP_008457947.1 PREDICTED: uncharacterized protein LOC103497512 [Cucumis melo]

4.5e-27

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Query:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE
        MA+STSVDSSLWWDPF P LTELENVSLSS ELPP LMKKMDDNHAWFV TVSLFKKPNEKSRVALDS E
Subjt:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE

XP_038902764.1 uncharacterized protein LOC120089385 isoform X1 [Benincasa hispida]

1.5e-30

98.57

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Query:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE
        MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDS E
Subjt:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C7B7 uncharacterized protein LOC103497512

2.2e-27

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Query:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE
        MA+STSVDSSLWWDPF P LTELENVSLSS ELPP LMKKMDDNHAWFV TVSLFKKPNEKSRVALDS E
Subjt:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE

A0A5A7TWR3 Nucleoporin NUP188-like protein

2.2e-27

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Query:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE
        MA+STSVDSSLWWDPF P LTELENVSLSS ELPP LMKKMDDNHAWFV TVSLFKKPNEKSRVALDS E
Subjt:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE

A0A5D3BKP2 DUF3414 domain-containing protein

2.2e-27

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Query:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE
        MA+STSVDSSLWWDPF P LTELENVSLSS ELPP LMKKMDDNHAWFV TVSLFKKPNEKSRVALDS E
Subjt:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE

A0A6J1CZ16 uncharacterized protein LOC111015501 isoform X1

1.1e-26

87.14

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Query:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE
        MATSTSVDSSLWWDPF  LLTELENVSLSSA+LPP+LMKK+DDN AWF+D+VSLFKKPNEKSRVALDSP+
Subjt:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE

E5GC19 Uncharacterized protein

2.2e-27

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Query:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE
        MA+STSVDSSLWWDPF P LTELENVSLSS ELPP LMKKMDDNHAWFV TVSLFKKPNEKSRVALDS E
Subjt:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G38760.1 Protein of unknown function (DUF3414)

4.8e-19

52.27

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Query:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPEYLLEMVPKKMIFVTRHKD
        MA   SVDSSLWWDPF  LLT+LEN SLS  +LP  + KK+++NHAWFV T+S+FK P+EKS+ AL+S   L+++   +++   + KD
Subjt:  MATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPEYLLEMVPKKMIFVTRHKD

Sequences

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CDS sequence

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ATGAACTCCCAAGCTCTCGCGGGGACATCTCGCATGGCTACCTCCACTTCCGTCGACTCGTCTCTCTGGTGGGATCCTTTCCGTCCACTTCTTACTGAGCTTGAAAATGT
CTCCCTCTCTTCTGCAGAACTTCCTCCTAAACTGATGAAAAAGATGGACGACAACCATGCTTGGTTCGTGGACACCGTTTCACTCTTCAAGAAACCGAACGAGAAATCAA
GGGTGGCTTTAGATTCTCCGGAATATTTGTTGGAAATGGTTCCAAAAAAGATGATATTTGTGACAAGGCACAAAGACTGA

mRNA sequence

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Protein sequence

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MNSQALAGTSRMATSTSVDSSLWWDPFRPLLTELENVSLSSAELPPKLMKKMDDNHAWFVDTVSLFKKPNEKSRVALDSPEYLLEMVPKKMIFVTRHKD

Lsi10G004670 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome