; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G004890 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G004890
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionPoly(A)-specific ribonuclease
Genome locationchr10:7023955..7024860
RNA-Seq ExpressionLsi10G004890
SyntenyLsi10G004890
Gene Ontology termsGO:0006402 - mRNA catabolic process (biological process)
GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0030014 - CCR4-NOT complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004535 - poly(A)-specific ribonuclease activity (molecular function)
InterPro domainsIPR006941 - Ribonuclease CAF1
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR039637 - CCR4-NOT transcription complex subunit 7/8/Pop2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045730.1 putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa]2.4e-11670.96Show/hide
Query:  MGRRNRRLPRR--EPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFS
        MG RN+   RR  +P IRQVWASNF+SEI +FDECL+FH+ILTIDTEFPGFI +SP  SI+E IY +FRFNVNQ KLIQLGITAS+D GQIGGSWEFNFS
Subjt:  MGRRNRRLPRR--EPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFS

Query:  DFDSETDAQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMA
        DFD + D+  PS++ FLE+NGL+F+KLKK GIPI  FT  FL II+K ++FRWVTFHGLYDIGYL+KAMGLI VLP+SMEEFAT+VVN +GIVRDLKHMA
Subjt:  DFDSETDAQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMA

Query:  RFCEGLEDGELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFMKMKVYNHPKIIRFGQIPWSIPLYCYNPSYY
        RFCEGLEDG LGL+RLGK+LN+KR+GMKHNAGSDSLLTASAH EM+ RF M  EVC+GFLYGF  +LE MKM +Y+H  I+R GQIP     + Y PS  
Subjt:  RFCEGLEDGELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFMKMKVYNHPKIIRFGQIPWSIPLYCYNPSYY

Query:  IAY
        I++
Subjt:  IAY

KAG6604931.1 putative CCR4-associated factor 1-like 8, partial [Cucurbita argyrosperma subsp. sororia]5.8e-10264.71Show/hide
Query:  MGRRNRRLPRRE-PLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSD
        MGRRNR  PRR  P I++VWASNFD EI + + CL+ + IL+IDTEFPG IR +PWGSI+E +Y+D RFNVNQTKLIQLG+TASD+SGQ+ GSWEFNFSD
Subjt:  MGRRNRRLPRRE-PLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSD

Query:  FDSETDAQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMAR
        FD + D Q PSS+SFLEQNGL+F KLKK GIP+ LFT NF  IIR+  V +WVTFHGLYDIGYL+KAMG+   LPESMEEFA +V  G+G+VRDLK +AR
Subjt:  FDSETDAQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMAR

Query:  FCEGLEDGELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFMKMKVYNHPKIIRFGQIPWSI
        +CEGLE G +GL+RLG+LL +KR+GMKH+AGSDSLLTA  H +M   F ++S   DG LYG QN LE MK+      + I FGQI  S+
Subjt:  FCEGLEDGELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFMKMKVYNHPKIIRFGQIPWSI

XP_022947867.1 putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]2.4e-10066.17Show/hide
Query:  MGRRNRRLPRRE-PLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSD
        MGRRNR  PRR  P I++VWASNFD EI + + CL+ + IL+IDTEFPG IR +PWGSI+E +Y+D RFNVNQTKLIQLG+TASD+SGQ+ GSWEFNFSD
Subjt:  MGRRNRRLPRRE-PLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSD

Query:  FDSETDAQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMAR
        FD + D Q PSS++FLEQNGL+F KLKK GIP+ LFT NF  IIR+  V +WVTFHGLYDIGYL+KAMG+   LPESMEEFA +V  G+G+VRDLK +AR
Subjt:  FDSETDAQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMAR

Query:  FCEGLEDGELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFM
        +CEGLE G +GL+RLG+LL +KR+GMKH+AGSDSLLTA  H +M   F ++SE  DG LYG +N L++M
Subjt:  FCEGLEDGELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFM

XP_031736916.1 putative CCR4-associated factor 1 homolog 8 [Cucumis sativus]9.2e-11670.39Show/hide
Query:  GRRNRRLPRREPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFD
        GR   R  R +PLIRQVWASNFDSEI +FDECL+FH+ILTIDTEFPGFI +SP GSI++ +Y DF FNVNQTKLIQLGITASDD GQIGGSWEFNFSDFD
Subjt:  GRRNRRLPRREPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFD

Query:  SETDAQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMARFC
         E DA  P ++ FLE NGL+ +K+KKDGIPI  FT  FL I+RK ++FRWVTFHGLYDIGYL+KAMGLI VLP+SMEEFATVVVN +GIVRDLKHMA+FC
Subjt:  SETDAQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMARFC

Query:  EGLED-GELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFMKMKV---YNHPKIIRFGQIPWSIPLYCYNPSY
        EGL+D G LGL+RLGKLLN KR+GMKHNAGSDSLLTASAHLEM+ RF M+S+VC+GFLYGF   LE MKMK+     H  I+RF           Y P Y
Subjt:  EGLED-GELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFMKMKV---YNHPKIIRFGQIPWSIPLYCYNPSY

Query:  YIAY
        ++ Y
Subjt:  YIAY

XP_038895744.1 putative CCR4-associated factor 1 homolog 8 [Benincasa hispida]3.2e-12977.05Show/hide
Query:  REPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPS
        R+ LI +VWASNFD+EI K +ECL+FH+I++IDTEFPGFIR SPWGSI+E +Y+DFRFNVNQTKLIQLG+TA DDSG+IGGSWEFNFSDFD E DAQ PS
Subjt:  REPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPS

Query:  SVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMARFCEGLEDGELG
        S SFLEQNGL+F KLKK GIPI LFTA F+ IIRKHNVFRWVTFHGLYDIGYL+KAMG+  VLPE+MEEFATVVV  LGIVRDLKHMARFCEGLEDG+LG
Subjt:  SVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMARFCEGLEDGELG

Query:  LQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFMKMKV-YNHPKIIRFGQIPWSIPLYCYNPSYYIAY
        L+RLGKLL+QKRYG+KHNAGSDSLLTASAH EM+ RFDMD+E+CDG+LYGF N L+ M + +   H KII FGQIP++IPLYCY PSY   Y
Subjt:  LQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFMKMKV-YNHPKIIRFGQIPWSIPLYCYNPSYYIAY

TrEMBL top hitse value%identityAlignment
A0A0A0LPP0 Poly(A)-specific ribonuclease4.4e-11670.39Show/hide
Query:  GRRNRRLPRREPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFD
        GR   R  R +PLIRQVWASNFDSEI +FDECL+FH+ILTIDTEFPGFI +SP GSI++ +Y DF FNVNQTKLIQLGITASDD GQIGGSWEFNFSDFD
Subjt:  GRRNRRLPRREPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFD

Query:  SETDAQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMARFC
         E DA  P ++ FLE NGL+ +K+KKDGIPI  FT  FL I+RK ++FRWVTFHGLYDIGYL+KAMGLI VLP+SMEEFATVVVN +GIVRDLKHMA+FC
Subjt:  SETDAQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMARFC

Query:  EGLED-GELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFMKMKV---YNHPKIIRFGQIPWSIPLYCYNPSY
        EGL+D G LGL+RLGKLLN KR+GMKHNAGSDSLLTASAHLEM+ RF M+S+VC+GFLYGF   LE MKMK+     H  I+RF           Y P Y
Subjt:  EGLED-GELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFMKMKV---YNHPKIIRFGQIPWSIPLYCYNPSY

Query:  YIAY
        ++ Y
Subjt:  YIAY

A0A5A7TRG1 Poly(A)-specific ribonuclease1.2e-11670.96Show/hide
Query:  MGRRNRRLPRR--EPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFS
        MG RN+   RR  +P IRQVWASNF+SEI +FDECL+FH+ILTIDTEFPGFI +SP  SI+E IY +FRFNVNQ KLIQLGITAS+D GQIGGSWEFNFS
Subjt:  MGRRNRRLPRR--EPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFS

Query:  DFDSETDAQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMA
        DFD + D+  PS++ FLE+NGL+F+KLKK GIPI  FT  FL II+K ++FRWVTFHGLYDIGYL+KAMGLI VLP+SMEEFAT+VVN +GIVRDLKHMA
Subjt:  DFDSETDAQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMA

Query:  RFCEGLEDGELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFMKMKVYNHPKIIRFGQIPWSIPLYCYNPSYY
        RFCEGLEDG LGL+RLGK+LN+KR+GMKHNAGSDSLLTASAH EM+ RF M  EVC+GFLYGF  +LE MKM +Y+H  I+R GQIP     + Y PS  
Subjt:  RFCEGLEDGELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFMKMKVYNHPKIIRFGQIPWSIPLYCYNPSYY

Query:  IAY
        I++
Subjt:  IAY

A0A6J1CXP9 Poly(A)-specific ribonuclease1.3e-9961.92Show/hide
Query:  MGRRNRRLPRR-EPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSD
        MGR  R   RR    IR+VW+ NFD E+   ++CL  + ILTIDTEFPGFIR +PWG+IEE +YDDFRFNVN+TKLIQLG+TASD+ G IG +WEFNFSD
Subjt:  MGRRNRRLPRR-EPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSD

Query:  FDSETDAQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMAR
        FD + D    SSVSFL+QNGL+F KLK+ GIPI  FT+    + RKH + RWVTFHGLYDIGYLLKAMG+   +PESMEEFA +V   LG V DLKHMA+
Subjt:  FDSETDAQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMAR

Query:  FCEGLEDGELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFMKMKVYNHPKIIRFGQIPWSIPLYCYNPSYYI
        FCEGLEDG+LGL++L +L+NQKR+G KH+AGSDSLLTAS + +M N+F++ SEVCDGFLYG +  L   K+K+Y +   + FGQIP+ +   CY P  YI
Subjt:  FCEGLEDGELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFMKMKVYNHPKIIRFGQIPWSIPLYCYNPSYYI

Query:  AY
        AY
Subjt:  AY

A0A6J1G7L2 Poly(A)-specific ribonuclease1.2e-10066.17Show/hide
Query:  MGRRNRRLPRRE-PLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSD
        MGRRNR  PRR  P I++VWASNFD EI + + CL+ + IL+IDTEFPG IR +PWGSI+E +Y+D RFNVNQTKLIQLG+TASD+SGQ+ GSWEFNFSD
Subjt:  MGRRNRRLPRRE-PLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSD

Query:  FDSETDAQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMAR
        FD + D Q PSS++FLEQNGL+F KLKK GIP+ LFT NF  IIR+  V +WVTFHGLYDIGYL+KAMG+   LPESMEEFA +V  G+G+VRDLK +AR
Subjt:  FDSETDAQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMAR

Query:  FCEGLEDGELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFM
        +CEGLE G +GL+RLG+LL +KR+GMKH+AGSDSLLTA  H +M   F ++SE  DG LYG +N L++M
Subjt:  FCEGLEDGELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFM

A0A6J1G7T4 Poly(A)-specific ribonuclease8.2e-9462.07Show/hide
Query:  RLPRRE-PLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETD
        R PR + PLIR+VWA N D EI + D CL  +SI++IDTEFPG I+++PWG+ +E +Y DFRFNVNQTK+IQLG+T SD+SG IGG+WEFNFSDFD E D
Subjt:  RLPRRE-PLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETD

Query:  AQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMARFCEGLE
        A  P+S+ FL+QNGL+F KLKKDGI +R F   FL  + KH ++RWVTFHGLYDIGYL+ AMG++  LPE++ EF  +V   +G VRDLKHMARFCEGLE
Subjt:  AQGPSSVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMARFCEGLE

Query:  DGELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLE
         G LGL++LG+LL+QKR+G+KH+AGSDSL+TA  H +M+ R+D  +E+CDGFLYG     E
Subjt:  DGELGLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLE

SwissProt top hitse value%identityAlignment
O64773 Probable CCR4-associated factor 1 homolog 56.5e-4040.85Show/hide
Query:  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSSVSFLE
        +VW  N  +E+    +CLK  + + IDTEFPG ++++P  + +E  Y D +FNV+ T LIQLG+T       I  +WE N SDF+     +   S++FL+
Subjt:  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSSVSFLE

Query:  QNGLNFQKLKKDGIPIRLFTANFLSII-RKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLG-IVRDLKHMARFCEGLEDGELGLQRL
         NGL+  K++++GI I  F   F  I+  KH   RWVTF G YD  YLLK +     LPE+ +EF   V   LG  V D+K MA  C GL     GLQR+
Subjt:  QNGLNFQKLKKDGIPIRLFTANFLSII-RKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLG-IVRDLKHMARFCEGLEDGELGLQRL

Query:  GKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDM
          +L  +R G  H+AGSDS LTA    +++  FD+
Subjt:  GKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDM

Q9C6M9 Putative CCR4-associated factor 1 homolog 46.5e-4043.05Show/hide
Query:  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSSVSFLE
        +VW  N + E+    +CLK  S + IDTEFPG ++++P  + EE  Y D +FNV+ T LIQLG T  D  G I  +WE N SDF+     +   S++FL+
Subjt:  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSSVSFLE

Query:  QNGLNFQKLKKDGIPIRLFTANFLSIIR-KHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLG-IVRDLKHMARFCEGLEDGELGLQRL
         NGLN  K+ ++GI I  F  +F  I++ K     WV F G YD  YL+K +     LPE+ EEF   V   LG  V D+K +A  C GL     GLQR+
Subjt:  QNGLNFQKLKKDGIPIRLFTANFLSIIR-KHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLG-IVRDLKHMARFCEGLEDGELGLQRL

Query:  GKLLNQKRYGMKHNAGSDSLLTA
          +L  KR G  H+AGSDS LTA
Subjt:  GKLLNQKRYGMKHNAGSDSLLTA

Q9LXM4 Putative CCR4-associated factor 1 homolog 81.5e-3941.82Show/hide
Query:  DECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSSVSFLEQNGLNFQKLKKDGI
        ++CL+ +  + IDTEFP  +R++   + +E  Y D  F+V++ KLIQLG+T  D +G+IGG+WE NFSDF  + DA+   S+ FL +NGL+ +K++++GI
Subjt:  DECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSSVSFLEQNGLNFQKLKKDGI

Query:  PIRLFTANFLSIIRK-HNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMARFCEGLEDGELGLQRLGKLLNQKRYGMKHNA
         I  F +    +++K      WVTFHG YDI YLLK     A LP + E F+  V   LG V DLK MA  CEGL    LGL+ L       R G  H+A
Subjt:  PIRLFTANFLSIIRK-HNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMARFCEGLEDGELGLQRLGKLLNQKRYGMKHNA

Query:  GSDSLLTASAHLEMMNRFDM
        GS++ LTA    ++++ F +
Subjt:  GSDSLLTASAHLEMMNRFDM

Q9SFX6 Putative CCR4-associated factor 1 homolog 32.9e-4043.05Show/hide
Query:  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSSVSFLE
        +VW  N + E+    +CLK  S + IDTEFPG ++++P  + EE  Y D +FNV+ T LIQLG T  D  G    +WE N SDFD     +   S++FL+
Subjt:  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSSVSFLE

Query:  QNGLNFQKLKKDGIPIRLFTANFLSII-RKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLG-IVRDLKHMARFCEGLEDGELGLQRL
         NGLN  K++++GI I  F  +F  I+  K     WV F G YD  YL+K +     LPE+ EEF   V   LG  V D+K +A  C GL   + GLQR+
Subjt:  QNGLNFQKLKKDGIPIRLFTANFLSII-RKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLG-IVRDLKHMARFCEGLEDGELGLQRL

Query:  GKLLNQKRYGMKHNAGSDSLLTA
          +L  KR G  H+AGSDS LTA
Subjt:  GKLLNQKRYGMKHNAGSDSLLTA

Q9SHJ0 Probable CCR4-associated factor 1 homolog 11.8e-4540.24Show/hide
Query:  EPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSS
        +PL R+VW SN D E+ +  ECLK   ++  DTE+PG I ++ + S  +  Y   + NV  TKLIQ G T  +  G+IGG WE NFS+F   +D +   S
Subjt:  EPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSS

Query:  VSFLEQNGLNFQKLKKDGIPI--RLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMARFCEGLEDGEL
        + FL ++GL+ QK++ +G+ +    F    +++ R      +VTF G YD  Y L  +     LPE+  EFAT VV   G V D K MA FCEGL +  L
Subjt:  VSFLEQNGLNFQKLKKDGIPI--RLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMARFCEGLEDGEL

Query:  GLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYG
        GL +L +LL   R G  H+AGSDSL+TA   +++ + ++ DS    G +YG
Subjt:  GLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYG

Arabidopsis top hitse value%identityAlignment
AT1G06450.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-4640.24Show/hide
Query:  EPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSS
        +PL R+VW SN D E+ +  ECLK   ++  DTE+PG I ++ + S  +  Y   + NV  TKLIQ G T  +  G+IGG WE NFS+F   +D +   S
Subjt:  EPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSS

Query:  VSFLEQNGLNFQKLKKDGIPI--RLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMARFCEGLEDGEL
        + FL ++GL+ QK++ +G+ +    F    +++ R      +VTF G YD  Y L  +     LPE+  EFAT VV   G V D K MA FCEGL +  L
Subjt:  VSFLEQNGLNFQKLKKDGIPI--RLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMARFCEGLEDGEL

Query:  GLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYG
        GL +L +LL   R G  H+AGSDSL+TA   +++ + ++ DS    G +YG
Subjt:  GLQRLGKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYG

AT1G27820.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.1e-4143.05Show/hide
Query:  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSSVSFLE
        +VW  N + E+    +CLK  S + IDTEFPG ++++P  + EE  Y D +FNV+ T LIQLG T  D  G    +WE N SDFD     +   S++FL+
Subjt:  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSSVSFLE

Query:  QNGLNFQKLKKDGIPIRLFTANFLSII-RKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLG-IVRDLKHMARFCEGLEDGELGLQRL
         NGLN  K++++GI I  F  +F  I+  K     WV F G YD  YL+K +     LPE+ EEF   V   LG  V D+K +A  C GL   + GLQR+
Subjt:  QNGLNFQKLKKDGIPIRLFTANFLSII-RKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLG-IVRDLKHMARFCEGLEDGELGLQRL

Query:  GKLLNQKRYGMKHNAGSDSLLTA
          +L  KR G  H+AGSDS LTA
Subjt:  GKLLNQKRYGMKHNAGSDSLLTA

AT1G27890.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.6e-4143.05Show/hide
Query:  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSSVSFLE
        +VW  N + E+    +CLK  S + IDTEFPG ++++P  + EE  Y D +FNV+ T LIQLG T  D  G I  +WE N SDF+     +   S++FL+
Subjt:  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSSVSFLE

Query:  QNGLNFQKLKKDGIPIRLFTANFLSIIR-KHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLG-IVRDLKHMARFCEGLEDGELGLQRL
         NGLN  K+ ++GI I  F  +F  I++ K     WV F G YD  YL+K +     LPE+ EEF   V   LG  V D+K +A  C GL     GLQR+
Subjt:  QNGLNFQKLKKDGIPIRLFTANFLSIIR-KHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLG-IVRDLKHMARFCEGLEDGELGLQRL

Query:  GKLLNQKRYGMKHNAGSDSLLTA
          +L  KR G  H+AGSDS LTA
Subjt:  GKLLNQKRYGMKHNAGSDSLLTA

AT1G61470.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.6e-4140.85Show/hide
Query:  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSSVSFLE
        +VW  N  +E+    +CLK  + + IDTEFPG ++++P  + +E  Y D +FNV+ T LIQLG+T       I  +WE N SDF+     +   S++FL+
Subjt:  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSSVSFLE

Query:  QNGLNFQKLKKDGIPIRLFTANFLSII-RKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLG-IVRDLKHMARFCEGLEDGELGLQRL
         NGL+  K++++GI I  F   F  I+  KH   RWVTF G YD  YLLK +     LPE+ +EF   V   LG  V D+K MA  C GL     GLQR+
Subjt:  QNGLNFQKLKKDGIPIRLFTANFLSII-RKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLG-IVRDLKHMARFCEGLEDGELGLQRL

Query:  GKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDM
          +L  +R G  H+AGSDS LTA    +++  FD+
Subjt:  GKLLNQKRYGMKHNAGSDSLLTASAHLEMMNRFDM

AT3G44240.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.0e-4041.82Show/hide
Query:  DECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSSVSFLEQNGLNFQKLKKDGI
        ++CL+ +  + IDTEFP  +R++   + +E  Y D  F+V++ KLIQLG+T  D +G+IGG+WE NFSDF  + DA+   S+ FL +NGL+ +K++++GI
Subjt:  DECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPSSVSFLEQNGLNFQKLKKDGI

Query:  PIRLFTANFLSIIRK-HNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMARFCEGLEDGELGLQRLGKLLNQKRYGMKHNA
         I  F +    +++K      WVTFHG YDI YLLK     A LP + E F+  V   LG V DLK MA  CEGL    LGL+ L       R G  H+A
Subjt:  PIRLFTANFLSIIRK-HNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMARFCEGLEDGELGLQRLGKLLNQKRYGMKHNA

Query:  GSDSLLTASAHLEMMNRFDM
        GS++ LTA    ++++ F +
Subjt:  GSDSLLTASAHLEMMNRFDM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGAAGAAATCGAAGACTTCCCAGAAGAGAACCTTTGATCCGACAAGTTTGGGCTTCGAATTTCGATTCCGAAATCTTCAAATTCGACGAATGCCTTAAATTCCA
CTCGATTCTGACTATCGACACTGAATTTCCTGGGTTTATCAGAAAATCCCCTTGGGGTTCGATTGAAGAAGCAATTTATGATGATTTCCGATTCAATGTGAACCAAACGA
AACTGATTCAATTGGGTATTACGGCTTCTGATGATTCGGGTCAAATCGGCGGTTCATGGGAGTTCAATTTTTCCGATTTCGACTCAGAAACCGACGCTCAAGGTCCTTCC
TCTGTTTCCTTTCTTGAACAAAACGGTTTGAATTTCCAAAAATTGAAGAAAGATGGAATACCCATTAGATTATTCACTGCGAATTTCTTAAGTATCATACGAAAACATAA
TGTTTTCAGATGGGTTACCTTCCATGGGCTATACGATATCGGGTATTTGTTAAAAGCCATGGGTTTAATCGCCGTCTTACCGGAATCAATGGAGGAATTCGCGACGGTGG
TGGTGAATGGACTGGGAATTGTGAGGGATTTGAAACATATGGCTCGATTTTGTGAAGGATTGGAAGATGGAGAACTTGGGCTTCAAAGATTAGGGAAATTACTGAATCAA
AAACGATATGGAATGAAACATAATGCTGGATCTGATAGTTTACTTACAGCTTCTGCTCATTTGGAGATGATGAACCGATTTGATATGGATTCAGAAGTTTGTGATGGGTT
TCTGTATGGGTTTCAAAATAACCTTGAATTCATGAAGATGAAGGTTTATAATCATCCGAAAATCATCAGATTTGGTCAAATTCCATGGTCAATCCCACTTTACTGTTATA
ATCCTTCTTATTACATTGCCTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGAAGAAATCGAAGACTTCCCAGAAGAGAACCTTTGATCCGACAAGTTTGGGCTTCGAATTTCGATTCCGAAATCTTCAAATTCGACGAATGCCTTAAATTCCA
CTCGATTCTGACTATCGACACTGAATTTCCTGGGTTTATCAGAAAATCCCCTTGGGGTTCGATTGAAGAAGCAATTTATGATGATTTCCGATTCAATGTGAACCAAACGA
AACTGATTCAATTGGGTATTACGGCTTCTGATGATTCGGGTCAAATCGGCGGTTCATGGGAGTTCAATTTTTCCGATTTCGACTCAGAAACCGACGCTCAAGGTCCTTCC
TCTGTTTCCTTTCTTGAACAAAACGGTTTGAATTTCCAAAAATTGAAGAAAGATGGAATACCCATTAGATTATTCACTGCGAATTTCTTAAGTATCATACGAAAACATAA
TGTTTTCAGATGGGTTACCTTCCATGGGCTATACGATATCGGGTATTTGTTAAAAGCCATGGGTTTAATCGCCGTCTTACCGGAATCAATGGAGGAATTCGCGACGGTGG
TGGTGAATGGACTGGGAATTGTGAGGGATTTGAAACATATGGCTCGATTTTGTGAAGGATTGGAAGATGGAGAACTTGGGCTTCAAAGATTAGGGAAATTACTGAATCAA
AAACGATATGGAATGAAACATAATGCTGGATCTGATAGTTTACTTACAGCTTCTGCTCATTTGGAGATGATGAACCGATTTGATATGGATTCAGAAGTTTGTGATGGGTT
TCTGTATGGGTTTCAAAATAACCTTGAATTCATGAAGATGAAGGTTTATAATCATCCGAAAATCATCAGATTTGGTCAAATTCCATGGTCAATCCCACTTTACTGTTATA
ATCCTTCTTATTACATTGCCTATTAA
Protein sequenceShow/hide protein sequence
MGRRNRRLPRREPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQGPS
SVSFLEQNGLNFQKLKKDGIPIRLFTANFLSIIRKHNVFRWVTFHGLYDIGYLLKAMGLIAVLPESMEEFATVVVNGLGIVRDLKHMARFCEGLEDGELGLQRLGKLLNQ
KRYGMKHNAGSDSLLTASAHLEMMNRFDMDSEVCDGFLYGFQNNLEFMKMKVYNHPKIIRFGQIPWSIPLYCYNPSYYIAY