; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G005370 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G005370
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionnuclear transcription factor Y subunit alpha-like
Genome locationchr10:7686498..7689776
RNA-Seq ExpressionLsi10G005370
SyntenyLsi10G005370
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571253.1 hypothetical protein SDJN03_30168, partial [Cucurbita argyrosperma subsp. sororia]1.1e-5562.07Show/hide
Query:  MGRSCHGDERWE------EEEEEEALSLCDLPVKEKQQSIR------SASAAVETEEFDFKQWRP--APPMLAADELFFQGQMLPLRVSFSCENSESNNI
        MGRSCHGDE WE      E+E+EEALS CDLP+KE Q  +        +SAAV++E+FDF    P    PM AADE+FFQG +LPLR SFS ENS +   
Subjt:  MGRSCHGDERWE------EEEEEEALSLCDLPVKEKQQSIR------SASAAVETEEFDFKQWRP--APPMLAADELFFQGQMLPLRVSFSCENSESNNI

Query:  NQLFGGNLWNRSESMDHNMMRFRNGSSSSSSSRSHYS-----SNNSISNPTNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFRLGLLRTP
        N  F  N   RSES D  M+RFRNGS+SSSSSRSHYS     SNNSIS PTNSKPR   NNVFHSHPSPTPQIRS STS  RSRSSSRW+FFRLGLLRTP
Subjt:  NQLFGGNLWNRSESMDHNMMRFRNGSSSSSSSRSHYS-----SNNSISNPTNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFRLGLLRTP

Query:  GMELHDLKTRTTTTTTTSVTTAHKPTASILEI
        GMELHDLKTRT + +  +   AH    S L +
Subjt:  GMELHDLKTRTTTTTTTSVTTAHKPTASILEI

XP_008457772.1 PREDICTED: homeobox protein 6 [Cucumis melo]2.9e-7473.22Show/hide
Query:  MKMMG-RSCHGDERW-------------EEEEEEEALSLCDLPVKEKQQSIRSASAA-VETEEFDFKQWRPAP-PMLAADELFFQGQMLPLRVSFSCENS
        MK++G RSCHGDER              +++EEEEALSLCDLPVKEKQQ  RS SA  VETE+FDF  WRP P PML AD+LFFQG MLPLR+SFS ENS
Subjt:  MKMMG-RSCHGDERW-------------EEEEEEEALSLCDLPVKEKQQSIRSASAA-VETEEFDFKQWRPAP-PMLAADELFFQGQMLPLRVSFSCENS

Query:  ESNNINQLFGGNLWNRSESMD-HNMMRFRNGSSSSSSSRSHYS-----SNNSISNP-TNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFR
        ++NN      GNLW+RSESMD +NM+RFRNGS+SSSSSRSHYS     SNNSIS P TN+KPRP  NNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFR
Subjt:  ESNNINQLFGGNLWNRSESMD-HNMMRFRNGSSSSSSSRSHYS-----SNNSISNP-TNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFR

Query:  LGLLRTPGMELHDLKTRTTTTTTTSVTTAHKPTASILEI
        LGLLRTPGMELHDLKTRTTTTTTT++TT HK TASIL +
Subjt:  LGLLRTPGMELHDLKTRTTTTTTTSVTTAHKPTASILEI

XP_011649316.1 homeobox protein 6 [Cucumis sativus]2.5e-7372.54Show/hide
Query:  MKMMG-RSCHGDERW----------------EEEEEEEALSLCDLPVKEKQQSIRSAS-AAVET-EEFDFKQWRPAP-PMLAADELFFQGQMLPLRVSFS
        MK++G RSCHGDER                 EEEEEEEALSLCDLPVKEKQQ  RS S   VET ++FDF  WRP P PML AD+LFFQG MLPLR+SFS
Subjt:  MKMMG-RSCHGDERW----------------EEEEEEEALSLCDLPVKEKQQSIRSAS-AAVET-EEFDFKQWRPAP-PMLAADELFFQGQMLPLRVSFS

Query:  CENSESNNINQLFGGNLWNRSESMD-HNMMRFRNGSSSSSSSRSHYS-----SNNSISNPTNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWE
         ENS++NN      GNLW RSESMD +NM+RFRN S+SSSSSRSHYS     SNNSIS PTNSKPRP  NNVFHSHPSPTPQIRSFSTSSHRSRSSSRWE
Subjt:  CENSESNNINQLFGGNLWNRSESMD-HNMMRFRNGSSSSSSSRSHYS-----SNNSISNPTNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWE

Query:  FFRLGLLRTPGMELHDLKTRTTTTTTTSVT--TAHKPTASILEI
        FFRLGLLRTPGMELHDLKTRTTTTTTT+ T  TAHK TASIL +
Subjt:  FFRLGLLRTPGMELHDLKTRTTTTTTTSVT--TAHKPTASILEI

XP_023513034.1 probable membrane-associated kinase regulator 1 [Cucurbita pepo subsp. pepo]4.3e-5763.36Show/hide
Query:  MGRSCHGDERWE------EEEEEEALSLCDLPVKEKQ------QSIRSASAAVETEEFDFKQWRP--APPMLAADELFFQGQMLPLRVSFSCENSESNNI
        MGRSCHGDE WE      E+E+EEALS CDLP+KE Q      Q+   +SAAV+TE+FDF    P    PM AADE+FFQGQ+LPLR SFS ENS +   
Subjt:  MGRSCHGDERWE------EEEEEEALSLCDLPVKEKQ------QSIRSASAAVETEEFDFKQWRP--APPMLAADELFFQGQMLPLRVSFSCENSESNNI

Query:  NQLFGGNLWNRSESMDHNMMRFRNGSSSSSSSRSHYS-----SNNSISNPTNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFRLGLLRTP
        N  F  N   RSES D  ++RFRNGS+SSSSSRSHYS     SNNSIS PTNSKPRP  NNVFHSHPSPTPQIRS STS  RSRSSSRW+FFRLGLLRTP
Subjt:  NQLFGGNLWNRSESMDHNMMRFRNGSSSSSSSRSHYS-----SNNSISNPTNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFRLGLLRTP

Query:  GMELHDLKTRTTTTTTTSVTTAHKPTASILEI
        GMELHDLKTRT + +  +   AH    S L +
Subjt:  GMELHDLKTRTTTTTTTSVTTAHKPTASILEI

XP_038902148.1 uncharacterized protein LOC120088781 [Benincasa hispida]2.7e-8378.7Show/hide
Query:  MKMMGRSCHGDERWEE--------EEEEEALSLCDLPVKEKQQSIRSASAAVETEEFDFKQWR-PAPPMLAADELFFQGQMLPLRVSFSCENSESNNINQ
        MK+MGRS HGDERWEE        EEEEEALS CDLPVKEKQQ +RSASAAVETE+FDF  WR P PPM AADELFFQGQMLPLR+SFS ENS +NNI+ 
Subjt:  MKMMGRSCHGDERWEE--------EEEEEALSLCDLPVKEKQQSIRSASAAVETEEFDFKQWR-PAPPMLAADELFFQGQMLPLRVSFSCENSESNNINQ

Query:  LFGGNLWNRSESMDHNMMRFRNGSSSSSSSRSHYS-----SNNSISNPTNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFRLGLLRTPGM
        LFGGNLW RSESMDHNM+RF NGSSSSSSSRSHYS     SNNS+S PTNSK RPQK NVFHSHPSPTPQIRSFS SSHRSRSSSRWEFFRLGLLRTPGM
Subjt:  LFGGNLWNRSESMDHNMMRFRNGSSSSSSSRSHYS-----SNNSISNPTNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFRLGLLRTPGM

Query:  ELHDLKTRTTTTTTTSVTTAHKPTASILEI
        ELHDLKTR  TTT  + TT HK T SIL +
Subjt:  ELHDLKTRTTTTTTTSVTTAHKPTASILEI

TrEMBL top hitse value%identityAlignment
A0A0A0LPT6 Uncharacterized protein1.2e-7372.54Show/hide
Query:  MKMMG-RSCHGDERW----------------EEEEEEEALSLCDLPVKEKQQSIRSAS-AAVET-EEFDFKQWRPAP-PMLAADELFFQGQMLPLRVSFS
        MK++G RSCHGDER                 EEEEEEEALSLCDLPVKEKQQ  RS S   VET ++FDF  WRP P PML AD+LFFQG MLPLR+SFS
Subjt:  MKMMG-RSCHGDERW----------------EEEEEEEALSLCDLPVKEKQQSIRSAS-AAVET-EEFDFKQWRPAP-PMLAADELFFQGQMLPLRVSFS

Query:  CENSESNNINQLFGGNLWNRSESMD-HNMMRFRNGSSSSSSSRSHYS-----SNNSISNPTNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWE
         ENS++NN      GNLW RSESMD +NM+RFRN S+SSSSSRSHYS     SNNSIS PTNSKPRP  NNVFHSHPSPTPQIRSFSTSSHRSRSSSRWE
Subjt:  CENSESNNINQLFGGNLWNRSESMD-HNMMRFRNGSSSSSSSRSHYS-----SNNSISNPTNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWE

Query:  FFRLGLLRTPGMELHDLKTRTTTTTTTSVT--TAHKPTASILEI
        FFRLGLLRTPGMELHDLKTRTTTTTTT+ T  TAHK TASIL +
Subjt:  FFRLGLLRTPGMELHDLKTRTTTTTTTSVT--TAHKPTASILEI

A0A1S3C7L1 homeobox protein 61.4e-7473.22Show/hide
Query:  MKMMG-RSCHGDERW-------------EEEEEEEALSLCDLPVKEKQQSIRSASAA-VETEEFDFKQWRPAP-PMLAADELFFQGQMLPLRVSFSCENS
        MK++G RSCHGDER              +++EEEEALSLCDLPVKEKQQ  RS SA  VETE+FDF  WRP P PML AD+LFFQG MLPLR+SFS ENS
Subjt:  MKMMG-RSCHGDERW-------------EEEEEEEALSLCDLPVKEKQQSIRSASAA-VETEEFDFKQWRPAP-PMLAADELFFQGQMLPLRVSFSCENS

Query:  ESNNINQLFGGNLWNRSESMD-HNMMRFRNGSSSSSSSRSHYS-----SNNSISNP-TNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFR
        ++NN      GNLW+RSESMD +NM+RFRNGS+SSSSSRSHYS     SNNSIS P TN+KPRP  NNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFR
Subjt:  ESNNINQLFGGNLWNRSESMD-HNMMRFRNGSSSSSSSRSHYS-----SNNSISNP-TNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFR

Query:  LGLLRTPGMELHDLKTRTTTTTTTSVTTAHKPTASILEI
        LGLLRTPGMELHDLKTRTTTTTTT++TT HK TASIL +
Subjt:  LGLLRTPGMELHDLKTRTTTTTTTSVTTAHKPTASILEI

A0A6J1F3H1 probable membrane-associated kinase regulator 18.7e-5662.13Show/hide
Query:  MGRSCHGDERWE------EEEEEEALSLCDLPVKEKQQSIR------SASAAVETEEFDFKQWRP--APPMLAADELFFQGQMLPLRVSFSCENSESNNI
        MGRSCHGDE WE      E+E+EEALS CDLP+KE Q  +        +SAAV++E+FDF    P    PM AADE+FFQG +LPLR SFS ENS +   
Subjt:  MGRSCHGDERWE------EEEEEEALSLCDLPVKEKQQSIR------SASAAVETEEFDFKQWRP--APPMLAADELFFQGQMLPLRVSFSCENSESNNI

Query:  NQLFGGNLWNRSESMDHNMMRFRNGSSSSSSSRSHYS-----SNNSISNPTNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFRLGLLRTP
        N  F  N   RSES D  M+RFRNGS+SSSSSRSHYS     SNNSIS PTNSKPRP  NNVFHSHPSPTPQIRS STS  RSRSSSRW+FFRLGLLRTP
Subjt:  NQLFGGNLWNRSESMDHNMMRFRNGSSSSSSSRSHYS-----SNNSISNPTNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFRLGLLRTP

Query:  GMELHDLKTRT---TTTTTTSVTTAHKPTASILEI
        GMELHDLKTRT   ++ T  +   AH    S L +
Subjt:  GMELHDLKTRT---TTTTTTSVTTAHKPTASILEI

A0A6J1JCH9 probable membrane-associated kinase regulator 11.5e-5563.44Show/hide
Query:  MGRSCHGDERWE------EEEEEEALSLCDLPVKEKQQSIR------SASAAVETEEFDFKQWRP--APPMLAADELFFQGQMLPLRVSFSCENSESNNI
        MGRSCHGDE WE      E+E+EEALS CDLP+KE Q  +        +SAAV++E+FDF    P    PM AADE+FFQG +LPL  SFS ENS +   
Subjt:  MGRSCHGDERWE------EEEEEEALSLCDLPVKEKQQSIR------SASAAVETEEFDFKQWRP--APPMLAADELFFQGQMLPLRVSFSCENSESNNI

Query:  NQLFGGNLWNRSESMDHNMMRFRNGSSSSSSSRSHYS-----SNNSISNPTNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFRLGLLRTP
        N  F  N   RSES D  M+RFRNGS+SSSSSRSHYS     SNNSIS PTNSKPRP  NNVFHSHPSPTPQIRS STS  RSRSSSRW+FFRLGLLRTP
Subjt:  NQLFGGNLWNRSESMDHNMMRFRNGSSSSSSSRSHYS-----SNNSISNPTNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFRLGLLRTP

Query:  GMELHDLKTRTTTTTTTSVTTAHKPTA
        GMELHDLKTRT +++  + T A   TA
Subjt:  GMELHDLKTRTTTTTTTSVTTAHKPTA

A0A6J1KZ54 uncharacterized protein LOC1114995741.8e-5366.99Show/hide
Query:  MGRSCHGDER-------WEEEEEEEALSLCDLPVKEKQQSIRSASAAVETEEFDFKQWRPAPPMLAADELFFQGQMLPLRVSFSCENSESNNINQLFGGN
        M  + HGDE         EEEEEEEALS+CDLPVKEKQQ +      + TE+FDF  W P PPM AAD++FFQG +LPLR+S S +N+     N  F   
Subjt:  MGRSCHGDER-------WEEEEEEEALSLCDLPVKEKQQSIRSASAAVETEEFDFKQWRPAPPMLAADELFFQGQMLPLRVSFSCENSESNNINQLFGGN

Query:  LWNRSESMDHNMMRFRNGSSSSS-SSRSHYS-----SNNSISNPTNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFRLGLLRTPGMELHD
        L  RSESMDHNM+RFRNGSSSSS SSRSHYS     SNNSIS PTNSKPR Q NNVFHSHPSPTPQIRSFST     RSSSRW+FFR+GLLRTPGMELHD
Subjt:  LWNRSESMDHNMMRFRNGSSSSS-SSRSHYS-----SNNSISNPTNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFRLGLLRTPGMELHD

Query:  LKTRTT
        LKTRTT
Subjt:  LKTRTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G67350.1 unknown protein1.7e-1135.65Show/hide
Query:  DERWEEEEEEEALSLCDLPVKEKQQSIRSASAAVETEEFD--------------FKQWRPAPPMLAADELFFQGQMLPLRVSFSCENSESNNINQLFGGN
        D+  EEEEEEEALSLCDLP   ++  +RS     E EEFD                   PAP M  ADELFF+G++LPLR S S +      +N+     
Subjt:  DERWEEEEEEEALSLCDLPVKEKQQSIRSASAAVETEEFD--------------FKQWRPAPPMLAADELFFQGQMLPLRVSFSCENSESNNINQLFGGN

Query:  LWNRSESMDHNMMRFRNGSSSSSSSRSHYSSNNSISNPTNSKPRPQKNN-VFHSHPSPTPQIRSFSTSSHR------SRSSSRWEFFRLGLLRTPGMELH
        L  RSES++      R G   S                     R  KNN + +S PSP PQIR  S+ + R       +SSS W+F RLGL+RTP +EL 
Subjt:  LWNRSESMDHNMMRFRNGSSSSSSSRSHYSSNNSISNPTNSKPRPQKNN-VFHSHPSPTPQIRSFSTSSHR------SRSSSRWEFFRLGLLRTPGMELH

Query:  DLK-------TRTTTTTTTSVTTAHKPTAS
                  +R ++ ++TS ++  K   S
Subjt:  DLK-------TRTTTTTTTSVTTAHKPTAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATGATGGGAAGAAGCTGCCATGGAGATGAAAGATGGGAAGAAGAAGAAGAAGAAGAAGCATTGTCTTTGTGTGACCTTCCTGTGAAAGAAAAGCAGCAGTCGAT
AAGATCGGCATCAGCCGCGGTGGAAACAGAGGAATTTGATTTCAAGCAGTGGCGGCCGGCGCCGCCGATGTTGGCGGCGGATGAGCTGTTCTTCCAAGGCCAAATGCTCC
CTCTTCGTGTGTCCTTCAGCTGTGAAAATAGCGAGAGTAATAATATTAATCAATTGTTTGGTGGAAATTTGTGGAACAGATCGGAGTCTATGGATCATAATATGATGAGG
TTTAGAAATGGAAGCAGTAGTAGCAGTAGCAGTAGAAGCCATTATTCCAGTAATAATTCCATTTCCAATCCGACGAACTCAAAGCCAAGACCACAAAAGAACAACGTTTT
CCACTCTCACCCGAGTCCGACGCCCCAAATCAGATCCTTCTCAACTTCCAGTCACCGGAGCCGGAGTTCCTCCCGGTGGGAGTTTTTCCGGCTGGGTCTTCTTCGAACGC
CCGGAATGGAGCTTCACGACCTCAAAACTCGCACAACCACCACTACCACCACCAGCGTCACGACGGCACATAAACCAACAGCCTCAATTCTAGAGATATCTTATGATGAA
GCACGTACATTATTTCAAGAATAA
mRNA sequenceShow/hide mRNA sequence
TTTGATTAGACACTTCATATACCCTTTTGTTTCTCTCTCTCCCCCTCACTAGATTCTCTCTCTCATCATACTTTAATTTTCCTTTATCTCTCTCAACCCATATCCTCTTT
TTGCTCATTCACACACACATATATATAAATCTCAATCCCTTCCTCTGTTCCTTTCTAAAAACAGACAGAGGAAAAGAAAAAAAAAACAGAGCAAAATTAAAGAACAATTT
GCAAGTGAGGTAATGAAGATGATGGGAAGAAGCTGCCATGGAGATGAAAGATGGGAAGAAGAAGAAGAAGAAGAAGCATTGTCTTTGTGTGACCTTCCTGTGAAAGAAAA
GCAGCAGTCGATAAGATCGGCATCAGCCGCGGTGGAAACAGAGGAATTTGATTTCAAGCAGTGGCGGCCGGCGCCGCCGATGTTGGCGGCGGATGAGCTGTTCTTCCAAG
GCCAAATGCTCCCTCTTCGTGTGTCCTTCAGCTGTGAAAATAGCGAGAGTAATAATATTAATCAATTGTTTGGTGGAAATTTGTGGAACAGATCGGAGTCTATGGATCAT
AATATGATGAGGTTTAGAAATGGAAGCAGTAGTAGCAGTAGCAGTAGAAGCCATTATTCCAGTAATAATTCCATTTCCAATCCGACGAACTCAAAGCCAAGACCACAAAA
GAACAACGTTTTCCACTCTCACCCGAGTCCGACGCCCCAAATCAGATCCTTCTCAACTTCCAGTCACCGGAGCCGGAGTTCCTCCCGGTGGGAGTTTTTCCGGCTGGGTC
TTCTTCGAACGCCCGGAATGGAGCTTCACGACCTCAAAACTCGCACAACCACCACTACCACCACCAGCGTCACGACGGCACATAAACCAACAGCCTCAATTCTAGAGATA
TCTTATGATGAAGCACGTACATTATTTCAAGAATAA
Protein sequenceShow/hide protein sequence
MKMMGRSCHGDERWEEEEEEEALSLCDLPVKEKQQSIRSASAAVETEEFDFKQWRPAPPMLAADELFFQGQMLPLRVSFSCENSESNNINQLFGGNLWNRSESMDHNMMR
FRNGSSSSSSSRSHYSSNNSISNPTNSKPRPQKNNVFHSHPSPTPQIRSFSTSSHRSRSSSRWEFFRLGLLRTPGMELHDLKTRTTTTTTTSVTTAHKPTASILEISYDE
ARTLFQE