; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G005880 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G005880
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionC2H2-type domain-containing protein
Genome locationchr10:8551526..8552086
RNA-Seq ExpressionLsi10G005880
SyntenyLsi10G005880
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8651931.1 hypothetical protein Csa_006531, partial [Cucumis sativus]1.0e-4077.57Show/hide
Query:  MDDKSLPYNLRLRKDHKASSPTEHSKTHKQEKDFQGKAG-EEVYVGHLVVNYRCEKCGCSFDLETSLRSHHCKNKNEKEAMEIQVEGRLGENKSFRKRSR
        MDDKSLPYNLRLRKDHK+SSPTEHSKTHK ++DFQ KA  +++YV HL+V+YRCEKCGCSFD+E+SL SHHCKNKNE+EAMEI+  G LGENKSFRK+SR
Subjt:  MDDKSLPYNLRLRKDHKASSPTEHSKTHKQEKDFQGKAG-EEVYVGHLVVNYRCEKCGCSFDLETSLRSHHCKNKNEKEAMEIQVEGRLGENKSFRKRSR

Query:  KGIPTRA
        KG+P RA
Subjt:  KGIPTRA

KAG6571418.1 hypothetical protein SDJN03_30333, partial [Cucurbita argyrosperma subsp. sororia]6.2e-3069.37Show/hide
Query:  MDDKSLPYNLRLRKDHKASSPTEHSKTHKQ-EKDFQGKAGEEVYVGHLVVNYRCEKCGCSFDLETSLRSHHCK--NKNEKEAMEIQVEGRLGENKSFRKR
        MDDKS+PYNLRLRKDHKAS+ TE SK  KQ E++FQ K GEEV     +  Y C+KCGCSFDL+ SLRSHHCK  NK+EKEAME +VE  LG++KS RKR
Subjt:  MDDKSLPYNLRLRKDHKASSPTEHSKTHKQ-EKDFQGKAGEEVYVGHLVVNYRCEKCGCSFDLETSLRSHHCK--NKNEKEAMEIQVEGRLGENKSFRKR

Query:  SRKGIPTRAPF
        +RKGIPTRAPF
Subjt:  SRKGIPTRAPF

KAG7011182.1 hypothetical protein SDJN02_27980, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-2968.47Show/hide
Query:  MDDKSLPYNLRLRKDHKASSPTEHSKTHKQ-EKDFQGKAGEEVYVGHLVVNYRCEKCGCSFDLETSLRSHHCK--NKNEKEAMEIQVEGRLGENKSFRKR
        MD+KS+PYNLRLRKDHKAS+ TE SK  KQ E++FQ K GEEV     +  Y C+KCGCSFDL+ SLRSHHCK  NK+EKEAME +VE  LG++KS RKR
Subjt:  MDDKSLPYNLRLRKDHKASSPTEHSKTHKQ-EKDFQGKAGEEVYVGHLVVNYRCEKCGCSFDLETSLRSHHCK--NKNEKEAMEIQVEGRLGENKSFRKR

Query:  SRKGIPTRAPF
        +RKGIPTRAPF
Subjt:  SRKGIPTRAPF

XP_022928048.1 uncharacterized protein LOC111434950 [Cucurbita moschata]3.1e-2966.96Show/hide
Query:  MDDKSLPYNLRLRKDHKASSPTEHSKTHKQ-EKDFQGKAGEEVYVGHLVVNYRCEKCGCSFDLETSLRSHHCK--NKNEKEAMEIQVEGRLGENKSFRKR
        MD+KS+PYNLRLRKDHKAS+ TE SK  KQ E++FQ K GEEV     +  Y C+KCGCSFDL+ SLRSHHCK  NK+E+EA E +VE  LG++KS RKR
Subjt:  MDDKSLPYNLRLRKDHKASSPTEHSKTHKQ-EKDFQGKAGEEVYVGHLVVNYRCEKCGCSFDLETSLRSHHCK--NKNEKEAMEIQVEGRLGENKSFRKR

Query:  SRKGIPTRAPFF
        +RKGIPTRAPFF
Subjt:  SRKGIPTRAPFF

XP_023511836.1 uncharacterized protein LOC111776737 [Cucurbita pepo subsp. pepo]2.8e-3068.75Show/hide
Query:  MDDKSLPYNLRLRKDHKASSPTEHSKTHKQ-EKDFQGKAGEEVYVGHLVVNYRCEKCGCSFDLETSLRSHHCK--NKNEKEAMEIQVEGRLGENKSFRKR
        MDDKS+PYNLRLRKDHKAS+ TE SK  KQ E++FQ K GEEV     +  Y C+KCGCSFDL+ SLRSHHCK  NK+EKEAME +V+  LG++KS RKR
Subjt:  MDDKSLPYNLRLRKDHKASSPTEHSKTHKQ-EKDFQGKAGEEVYVGHLVVNYRCEKCGCSFDLETSLRSHHCK--NKNEKEAMEIQVEGRLGENKSFRKR

Query:  SRKGIPTRAPFF
        +RKGIPTRAPFF
Subjt:  SRKGIPTRAPFF

TrEMBL top hitse value%identityAlignment
A0A0A0LQ06 C2H2-type domain-containing protein2.4e-4378.18Show/hide
Query:  MDDKSLPYNLRLRKDHKASSPTEHSKTHKQEKDFQGKAG-EEVYVGHLVVNYRCEKCGCSFDLETSLRSHHCKNKNEKEAMEIQVEGRLGENKSFRKRSR
        MDDKSLPYNLRLRKDHK+SSPTEHSKTHK ++DFQ KA  +++YV HL+V+YRCEKCGCSFD+E+SL SHHCKNKNE+EAMEI+  G LGENKSFRK+SR
Subjt:  MDDKSLPYNLRLRKDHKASSPTEHSKTHKQEKDFQGKAG-EEVYVGHLVVNYRCEKCGCSFDLETSLRSHHCKNKNEKEAMEIQVEGRLGENKSFRKRSR

Query:  KGIPTRAPFF
        KG+P RAPFF
Subjt:  KGIPTRAPFF

A0A6J1D739 uncharacterized protein LOC1110179591.1e-2158.97Show/hide
Query:  MDDKSLPYNLRLRKDHKASSPTEHSK-THKQEKDFQGKAGEEVYVGHLVVNYRCEKCGCSFDLETSLRSHH--CKNKNEKEAMEIQVEGRL-----GENK
        MDDKSLPYNLRLR   KAS+PTE SK   K E+DFQ K  EE+      +  RCEKCGC F +E SL SHH  CKNK  +E ME QV   +        K
Subjt:  MDDKSLPYNLRLRKDHKASSPTEHSK-THKQEKDFQGKAGEEVYVGHLVVNYRCEKCGCSFDLETSLRSHH--CKNKNEKEAMEIQVEGRL-----GENK

Query:  SFRKRSRKGIPTRAPFF
        SFRKRSRKGIPTRAP F
Subjt:  SFRKRSRKGIPTRAPFF

A0A6J1EMR9 uncharacterized protein LOC1114349501.5e-2966.96Show/hide
Query:  MDDKSLPYNLRLRKDHKASSPTEHSKTHKQ-EKDFQGKAGEEVYVGHLVVNYRCEKCGCSFDLETSLRSHHCK--NKNEKEAMEIQVEGRLGENKSFRKR
        MD+KS+PYNLRLRKDHKAS+ TE SK  KQ E++FQ K GEEV     +  Y C+KCGCSFDL+ SLRSHHCK  NK+E+EA E +VE  LG++KS RKR
Subjt:  MDDKSLPYNLRLRKDHKASSPTEHSKTHKQ-EKDFQGKAGEEVYVGHLVVNYRCEKCGCSFDLETSLRSHHCK--NKNEKEAMEIQVEGRLGENKSFRKR

Query:  SRKGIPTRAPFF
        +RKGIPTRAPFF
Subjt:  SRKGIPTRAPFF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGACAAATCGCTTCCTTATAATCTTCGACTTCGGAAAGATCACAAAGCTTCTTCTCCAACTGAACATTCCAAAACTCATAAGCAAGAAAAAGATTTTCAGGGAAA
AGCAGGTGAAGAAGTATATGTAGGGCATTTAGTTGTGAATTACCGATGTGAAAAATGTGGGTGCTCTTTTGATCTTGAAACCTCTCTTCGTTCGCATCATTGCAAAAATA
AAAATGAGAAAGAAGCCATGGAAATTCAAGTGGAGGGAAGGTTGGGGGAGAACAAGTCTTTCAGAAAAAGAAGCAGGAAGGGAATACCAACACGGGCACCTTTCTTTTAG
mRNA sequenceShow/hide mRNA sequence
TGTAGATTTGAAGCTTCAACAATGGATGACAAATCGCTTCCTTATAATCTTCGACTTCGGAAAGATCACAAAGCTTCTTCTCCAACTGAACATTCCAAAACTCATAAGCA
AGAAAAAGATTTTCAGGGAAAAGCAGGTGAAGAAGTATATGTAGGGCATTTAGTTGTGAATTACCGATGTGAAAAATGTGGGTGCTCTTTTGATCTTGAAACCTCTCTTC
GTTCGCATCATTGCAAAAATAAAAATGAGAAAGAAGCCATGGAAATTCAAGTGGAGGGAAGGTTGGGGGAGAACAAGTCTTTCAGAAAAAGAAGCAGGAAGGGAATACCA
ACACGGGCACCTTTCTTTTAG
Protein sequenceShow/hide protein sequence
MDDKSLPYNLRLRKDHKASSPTEHSKTHKQEKDFQGKAGEEVYVGHLVVNYRCEKCGCSFDLETSLRSHHCKNKNEKEAMEIQVEGRLGENKSFRKRSRKGIPTRAPFF