; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G005910 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G005910
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Genome locationchr10:8560812..8562394
RNA-Seq ExpressionLsi10G005910
SyntenyLsi10G005910
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148065.1 B3 domain-containing transcription factor VRN1 isoform X2 [Cucumis sativus]3.9e-16179.45Show/hide
Query:  MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLI
        M LF+SPNPHFFKI+LHQ L QQKL++PNKFVKNN  SLL+N  TL LPDG+ W  QL +LD KICFLRGWPEFV FY+VQPGYFLVFQLK ICCF+VLI
Subjt:  MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLI

Query:  FDTSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRR--DKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDL
        FDTSATEIDYP RR  V++PKSE++DE ES+QIL+E VLKKRRR   K++ET+AY S REMK    KN+KIKI K R FTTPQGFS      D+DEDEDL
Subjt:  FDTSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRR--DKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDL

Query:  ERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEV
        E +YS RQ+NYR S YNER+DGRSSPESMRPMNPRKT Q LTENQLVV+RRASSFKCRT NPSFMVTMRPSYIQTGN LS+PRIF+ERYIKESVDVKLEV
Subjt:  ERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEV

Query:  GDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPSP
        GDGR W+VWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHF VTIFRLPSP
Subjt:  GDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPSP

XP_008457851.1 PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo]3.9e-16982.24Show/hide
Query:  MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLI
        M  F SPNPHFFKIILHQ L QQKL++PNKFVKNNGDSLL+N V L LPDGA W  QL KLD K CFLRGWPEFV+FYS+QPGYFLVFQLK ICCF+VLI
Subjt:  MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLI

Query:  FDTSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRR--DKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDL
        FDTSATEIDYP RRP VLIPKSE+EDEEES+ IL+EA LKKR+R   K++ET+AYCS R+MK    KN++IKI K+R FTTPQ FS  DEDEDEDEDEDL
Subjt:  FDTSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRR--DKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDL

Query:  ERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEV
        E NYS RQ+NYRGSAYNE +DGRSSPESMRPMNPRK PQ LTENQLVVLRRASSFKCRT NPSFMVTMRPSYIQTGN LS+PRIF+ERYIKES+DVKLEV
Subjt:  ERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEV

Query:  GDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPSPQ
        GDGR W+VWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFEL+NKTPKVHFHVTIFRLP+PQ
Subjt:  GDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPSPQ

XP_011649360.1 B3 domain-containing transcription factor VRN1 isoform X1 [Cucumis sativus]7.6e-15774.17Show/hide
Query:  MALFSSPNPHFFKIILHQTLIQQKL--------------------------EIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEF
        M LF+SPNPHFFKI+LHQ L QQKL                          ++PNKFVKNN  SLL+N  TL LPDG+ W  QL +LD KICFLRGWPEF
Subjt:  MALFSSPNPHFFKIILHQTLIQQKL--------------------------EIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEF

Query:  VQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRR--DKDEETAAYCSFREMKKMMRKNVKIKIA
        V FY+VQPGYFLVFQLK ICCF+VLIFDTSATEIDYP RR  V++PKSE++DE ES+QIL+E VLKKRRR   K++ET+AY S REMK    KN+KIKI 
Subjt:  VQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRR--DKDEETAAYCSFREMKKMMRKNVKIKIA

Query:  KYRGFTTPQGFSDEDEDEDEDEDEDLERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQ
        K R FTTPQGFS      D+DEDEDLE +YS RQ+NYR S YNER+DGRSSPESMRPMNPRKT Q LTENQLVV+RRASSFKCRT NPSFMVTMRPSYIQ
Subjt:  KYRGFTTPQGFSDEDEDEDEDEDEDLERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQ

Query:  TGNYLSMPRIFTERYIKESVDVKLEVGDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPSP
        TGN LS+PRIF+ERYIKESVDVKLEVGDGR W+VWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHF VTIFRLPSP
Subjt:  TGNYLSMPRIFTERYIKESVDVKLEVGDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPSP

XP_038902136.1 B3 domain-containing transcription factor VRN1-like isoform X1 [Benincasa hispida]8.4e-17279.34Show/hide
Query:  MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLI
        MALFSSPNPHFFKIILHQ LIQQKL++PNKFVKNNG SLL++K TL LPDGANW +QLK LD KICFLRGWPEFV+FYS+QPGYFLVFQL+ ICCF+VLI
Subjt:  MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLI

Query:  FDTSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDLER
        FDTSATEIDYPTR P+VLIPK+ENED EESV+ LN AVLKKR R+K+E+T AYCSFREMKKMMRKNVKIKI K+RGFTT QGFS     EDEDEDEDLE 
Subjt:  FDTSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDLER

Query:  NYSRRQSNYRG----------------------------SAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQ
        NYSRRQS YRG                            SAYNE DDGR SPE+MRPMNPRKTP  LTENQLVVLRRA SFKCRTNNPSFMVTMRPSYIQ
Subjt:  NYSRRQSNYRG----------------------------SAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQ

Query:  TGNYLSMPRIFTERYIKESVDVKLEVGDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPSPQ
        TGNYLS+PRIF ERYIKES+DVKLE+GDGRSWRV CGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFEL+NKT KVHFHVTIFRLPSP+
Subjt:  TGNYLSMPRIFTERYIKESVDVKLEVGDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPSPQ

XP_038902137.1 B3 domain-containing transcription factor VRN1-like isoform X2 [Benincasa hispida]2.5e-17685.44Show/hide
Query:  MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLI
        MALFSSPNPHFFKIILHQ LIQQKL++PNKFVKNNG SLL++K TL LPDGANW +QLK LD KICFLRGWPEFV+FYS+QPGYFLVFQL+ ICCF+VLI
Subjt:  MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLI

Query:  FDTSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDLER
        FDTSATEIDYPTR P+VLIPK+ENED EESV+ LN AVLKKR R+K+E+T AYCSFREMKKMMRKNVKIKI K+RGFTT QGFS     EDEDEDEDLE 
Subjt:  FDTSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDLER

Query:  NYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEVGD
        NYSRRQS YRGSAYNE DDGR SPE+MRPMNPRKTP  LTENQLVVLRRA SFKCRTNNPSFMVTMRPSYIQTGNYLS+PRIF ERYIKES+DVKLE+GD
Subjt:  NYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEVGD

Query:  GRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPSPQ
        GRSWRV CGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFEL+NKT KVHFHVTIFRLPSP+
Subjt:  GRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPSPQ

TrEMBL top hitse value%identityAlignment
A0A0A0LM04 Uncharacterized protein1.9e-16179.45Show/hide
Query:  MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLI
        M LF+SPNPHFFKI+LHQ L QQKL++PNKFVKNN  SLL+N  TL LPDG+ W  QL +LD KICFLRGWPEFV FY+VQPGYFLVFQLK ICCF+VLI
Subjt:  MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLI

Query:  FDTSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRR--DKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDL
        FDTSATEIDYP RR  V++PKSE++DE ES+QIL+E VLKKRRR   K++ET+AY S REMK    KN+KIKI K R FTTPQGFS      D+DEDEDL
Subjt:  FDTSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRR--DKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDL

Query:  ERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEV
        E +YS RQ+NYR S YNER+DGRSSPESMRPMNPRKT Q LTENQLVV+RRASSFKCRT NPSFMVTMRPSYIQTGN LS+PRIF+ERYIKESVDVKLEV
Subjt:  ERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEV

Query:  GDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPSP
        GDGR W+VWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHF VTIFRLPSP
Subjt:  GDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPSP

A0A0A0LMR6 Uncharacterized protein2.5e-15378.24Show/hide
Query:  LFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFD
        LF SPNPHFFK+ILHQTL QQKL++PNKFVKNNG SLL+NKVTL LPDGANWK+QLKKLD KICF RGWPEFVQFYSVQPG+FLVFQLK ICCF+VLIFD
Subjt:  LFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFD

Query:  TSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRDKDEET-AAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDLERN
        TSATEIDYP RR   LIPKS NEDEEES+QILNE VLKKRR +K+EET  AY S R +KKMMRKN K+KIAK RG T     SDEDE        DLE +
Subjt:  TSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRDKDEET-AAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDLERN

Query:  YSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEVGDG
         SRRQSN+RG  YNE DDGR SPESMRPMNPRKTP  LTENQL V +RAS FK R NNPSFMVTMRPSYIQTGNYLS+PR F E+YIKESVDVKLEVGDG
Subjt:  YSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEVGDG

Query:  RSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPSPQ
        R WRVWCGVRWAFTRRRTELKGGWKRFAVDNEL+EGDICVFELM K   V F V IFRLP  +
Subjt:  RSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPSPQ

A0A1S3C614 B3 domain-containing transcription factor VRN1-like1.9e-16982.24Show/hide
Query:  MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLI
        M  F SPNPHFFKIILHQ L QQKL++PNKFVKNNGDSLL+N V L LPDGA W  QL KLD K CFLRGWPEFV+FYS+QPGYFLVFQLK ICCF+VLI
Subjt:  MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLI

Query:  FDTSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRR--DKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDL
        FDTSATEIDYP RRP VLIPKSE+EDEEES+ IL+EA LKKR+R   K++ET+AYCS R+MK    KN++IKI K+R FTTPQ FS  DEDEDEDEDEDL
Subjt:  FDTSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRR--DKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDL

Query:  ERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEV
        E NYS RQ+NYRGSAYNE +DGRSSPESMRPMNPRK PQ LTENQLVVLRRASSFKCRT NPSFMVTMRPSYIQTGN LS+PRIF+ERYIKES+DVKLEV
Subjt:  ERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEV

Query:  GDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPSPQ
        GDGR W+VWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFEL+NKTPKVHFHVTIFRLP+PQ
Subjt:  GDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPSPQ

A0A1S3C6V0 B3 domain-containing transcription factor VRN1-like1.2e-15579.44Show/hide
Query:  LFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFD
        LFSSPNPHFFK+ILHQTL QQKLE+PNKFVKNNG S+L+NKVTL LPDGANWK+QLKK D KI F RGWPEFVQFYSVQPGYFLVFQLK ICCF+VLIFD
Subjt:  LFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFD

Query:  TSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDLERNY
        TSATEIDYP R    +IPKS NEDEEES+QILNE VLKKRR +K+EET AY S R +KKMMRKN K+KIAK RG T     SDEDE       EDLE + 
Subjt:  TSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDLERNY

Query:  SRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEVGDGR
        SRRQSN+RG+AYNE DDGR SPESMRPMNPRKTP  LTENQL V +RAS FK R NNPSFMVTMRPSYIQTGNYLS+PR F ERYIKESVDVKLEVGDGR
Subjt:  SRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEVGDGR

Query:  SWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPS
        SWRVWCGVRWAFTRRRTELKGGWKRFAVDNEL+EGDICVFELM K   V F V IFRLP+
Subjt:  SWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPS

A0A5A7TS22 B3 domain-containing transcription factor VRN1-like1.2e-15579.44Show/hide
Query:  LFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFD
        LFSSPNPHFFK+ILHQTL QQKLE+PNKFVKNNG S+L+NKVTL LPDGANWK+QLKK D KI F RGWPEFVQFYSVQPGYFLVFQLK ICCF+VLIFD
Subjt:  LFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFD

Query:  TSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDLERNY
        TSATEIDYP R    +IPKS NEDEEES+QILNE VLKKRR +K+EET AY S R +KKMMRKN K+KIAK RG T     SDEDE       EDLE + 
Subjt:  TSATEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDLERNY

Query:  SRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEVGDGR
        SRRQSN+RG+AYNE DDGR SPESMRPMNPRKTP  LTENQL V +RAS FK R NNPSFMVTMRPSYIQTGNYLS+PR F ERYIKESVDVKLEVGDGR
Subjt:  SRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEVGDGR

Query:  SWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPS
        SWRVWCGVRWAFTRRRTELKGGWKRFAVDNEL+EGDICVFELM K   V F V IFRLP+
Subjt:  SWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRLPS

SwissProt top hitse value%identityAlignment
Q2R9D2 B3 domain-containing protein Os11g01976001.8e-1225.85Show/hide
Query:  FFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNK----VTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSAT
        FF+++L    + ++++IP+ F     +  L N+    V+L    G  W  +L    +   F+ GW EFV+  S+Q G FLVF       FSV +F+ S  
Subjt:  FFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNK----VTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSAT

Query:  E-IDYPTRRPTV-LIPKSENED---------EEESVQIL--NEAVLKKRRRD------------KDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQ
        + I   +  P+  +I K+E+++          E+    L  N  +  KR RD            K    A  C     K+      K K+      +T  
Subjt:  E-IDYPTRRPTV-LIPKSENED---------EEESVQIL--NEAVLKKRRRD------------KDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQ

Query:  GFSDEDEDEDEDEDED-------LERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQL-VVLRRASSFKCRTNNPSFMVTMRPSYIQT
             DED    +  +       L    SRR              GR   +  R +      + +TE +    L+RA  FK  + NP  +  M  SY+  
Subjt:  GFSDEDEDEDEDEDED-------LERNYSRRQSNYRGSAYNERDDGRSSPESMRPMNPRKTPQELTENQL-VVLRRASSFKCRTNNPSFMVTMRPSYIQT

Query:  GNYLSMPRIFTERYIKE-SVDVKLEVGDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNK-TPKVHFH
        G ++++P  F    +   +  + L    G++W V     +   R      GGW +FAV N LE+ D+CVFEL+ K   KVH +
Subjt:  GNYLSMPRIFTERYIKE-SVDVKLEVGDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNK-TPKVHFH

Q84R27 B3 domain-containing protein At3g189608.8e-1540.57Show/hide
Query:  SPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSA
        SP   FFK++L  T+  + ++IP +FVK  G S L   VTL  P G    ++LK++ ++I F  GW EF + +S++ G+FL+F+ K    F V+IF+ SA
Subjt:  SPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSA

Query:  TEIDYP
         E  YP
Subjt:  TEIDYP

Q8L3W1 B3 domain-containing transcription factor VRN14.5e-2728.77Show/hide
Query:  PNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSAT
        P P F K+I   T+ +++L +P+KFV    D L    V L +PDG  W++ L+K D+KI F  GW EFV  YS++ GY L+F+ +    FSV IF+ S +
Subjt:  PNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSAT

Query:  EIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDLERNYSRRQ
        EI+Y     T L+  + N            A L +   D+D E     S       + ++       Y        F+   + E+      + +   R++
Subjt:  EIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDLERNYSRRQ

Query:  SNYRGSAYNERDDGRSSPESMRPMNPRKTPQELT---ENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKE-SVDVKLEVGDGR
         N      N        PE+        + ++ T   E +   +  A +F+    NP F V +RPSY+  G  + +P  F E+Y+   S  +K+++ + +
Subjt:  SNYRGSAYNERDDGRSSPESMRPMNPRKTPQELT---ENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKE-SVDVKLEVGDGR

Query:  SWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRL
         W V C     +   R +   GW  F ++N L EGD+CVFEL+ +T      VT FR+
Subjt:  SWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRL

Q9XIB4 B3 domain-containing protein At1g494759.7e-1431.97Show/hide
Query:  FFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDY
        F KIIL   +I++ +++P +FV+      L + VTL  P G    +++K++ D++ F +GW EF + +S+  G+FL F  +   CF V+IFD SA+EI+Y
Subjt:  FFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDY

Query:  P-----TRRPTVL------IPKSENEDEEESVQILNEAVLKKRRRDK
        P       R  V+          E+ D++  V  ++E + KK+++ +
Subjt:  P-----TRRPTVL------IPKSENEDEEESVQILNEAVLKKRRRDK

Q9ZSH7 B3 domain-containing protein At4g015801.1e-1436.43Show/hide
Query:  SPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSA
        SP   FFK++L  T+  + + IP +FVK  G S L   VTL  P G    ++LK++ ++I F  GW EF + +S++ G+FL+F+ K    F V+IF+ SA
Subjt:  SPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSA

Query:  TEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRD
         E +YP      +I   ++  E    +   E   KKR RD
Subjt:  TEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRD

Arabidopsis top hitse value%identityAlignment
AT1G49475.1 AP2/B3-like transcriptional factor family protein6.9e-1531.97Show/hide
Query:  FFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDY
        F KIIL   +I++ +++P +FV+      L + VTL  P G    +++K++ D++ F +GW EF + +S+  G+FL F  +   CF V+IFD SA+EI+Y
Subjt:  FFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDY

Query:  P-----TRRPTVL------IPKSENEDEEESVQILNEAVLKKRRRDK
        P       R  V+          E+ D++  V  ++E + KK+++ +
Subjt:  P-----TRRPTVL------IPKSENEDEEESVQILNEAVLKKRRRDK

AT1G49480.1 related to vernalization1 11.0e-1029.69Show/hide
Query:  YRGFTTPQGFSDEDEDEDEDEDEDLERNYSRRQSNYRGSAYNER----DDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPS
        Y G T  Q F  E + E   E   + +   R++ N      N      DD  +  +     + RK      E +  V   A +F+    NP F V +RPS
Subjt:  YRGFTTPQGFSDEDEDEDEDEDEDLERNYSRRQSNYRGSAYNER----DDGRSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPS

Query:  YIQTGNYLSMPRIFTERYIKE-SVDVKLEVGDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRL
        Y+  G  + +P  F E+Y+   S  +KL++G+ + W V C     +   R +   GW  F ++N + EGD+CVFEL+ +T      VT FR+
Subjt:  YIQTGNYLSMPRIFTERYIKE-SVDVKLEVGDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRL

AT3G18960.1 AP2/B3-like transcriptional factor family protein6.2e-1640.57Show/hide
Query:  SPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSA
        SP   FFK++L  T+  + ++IP +FVK  G S L   VTL  P G    ++LK++ ++I F  GW EF + +S++ G+FL+F+ K    F V+IF+ SA
Subjt:  SPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSA

Query:  TEIDYP
         E  YP
Subjt:  TEIDYP

AT3G18990.1 AP2/B3-like transcriptional factor family protein3.2e-2828.77Show/hide
Query:  PNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSAT
        P P F K+I   T+ +++L +P+KFV    D L    V L +PDG  W++ L+K D+KI F  GW EFV  YS++ GY L+F+ +    FSV IF+ S +
Subjt:  PNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSAT

Query:  EIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDLERNYSRRQ
        EI+Y     T L+  + N            A L +   D+D E     S       + ++       Y        F+   + E+      + +   R++
Subjt:  EIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDLERNYSRRQ

Query:  SNYRGSAYNERDDGRSSPESMRPMNPRKTPQELT---ENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKE-SVDVKLEVGDGR
         N      N        PE+        + ++ T   E +   +  A +F+    NP F V +RPSY+  G  + +P  F E+Y+   S  +K+++ + +
Subjt:  SNYRGSAYNERDDGRSSPESMRPMNPRKTPQELT---ENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKE-SVDVKLEVGDGR

Query:  SWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRL
         W V C     +   R +   GW  F ++N L EGD+CVFEL+ +T      VT FR+
Subjt:  SWRVWCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFHVTIFRL

AT4G01580.1 AP2/B3-like transcriptional factor family protein8.2e-1636.43Show/hide
Query:  SPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSA
        SP   FFK++L  T+  + + IP +FVK  G S L   VTL  P G    ++LK++ ++I F  GW EF + +S++ G+FL+F+ K    F V+IF+ SA
Subjt:  SPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSA

Query:  TEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRD
         E +YP      +I   ++  E    +   E   KKR RD
Subjt:  TEIDYPTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTATTCAGTTCCCCAAATCCCCATTTCTTCAAGATCATTCTCCACCAAACTCTCATCCAACAAAAGCTTGAGATTCCAAACAAGTTCGTCAAGAACAATGGCGA
TTCTCTGTTATACAACAAGGTCACTCTCTGCCTTCCCGACGGCGCTAACTGGAAGCTCCAACTCAAGAAATTGGACGACAAAATCTGTTTCCTCAGAGGCTGGCCGGAAT
TCGTCCAGTTTTACTCTGTCCAACCTGGTTATTTTCTTGTGTTCCAGTTGAAAGCTATTTGCTGCTTCAGTGTCCTCATTTTCGATACCTCTGCTACCGAAATCGATTAT
CCAACGCGCCGACCGACGGTTCTGATTCCCAAAAGCGAAAATGAGGATGAAGAGGAATCTGTTCAGATACTGAATGAGGCGGTTTTGAAGAAGAGAAGAAGAGACAAAGA
CGAAGAAACAGCGGCCTATTGTTCGTTCCGAGAGATGAAGAAGATGATGAGGAAGAATGTGAAGATCAAGATCGCGAAGTATCGAGGATTCACTACGCCTCAAGGATTCA
GCGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATCTGGAAAGGAATTACTCACGGAGACAGAGTAATTACAGAGGATCAGCGTATAATGAGAGAGATGACGGC
CGATCCAGTCCGGAATCGATGAGACCGATGAATCCACGGAAGACGCCGCAGGAATTGACGGAGAATCAATTGGTAGTTCTGAGGAGAGCGAGTTCGTTCAAATGTAGGAC
GAATAATCCTTCATTCATGGTGACAATGAGGCCTTCCTACATCCAAACAGGGAATTACCTGAGCATGCCGAGGATCTTTACAGAGAGATACATAAAGGAATCGGTGGATG
TGAAGCTGGAGGTGGGCGACGGGAGGAGTTGGAGAGTGTGGTGTGGCGTGCGGTGGGCGTTCACACGGCGGCGAACGGAGTTGAAAGGCGGTTGGAAAAGATTCGCCGTT
GATAATGAGTTGGAAGAAGGGGACATTTGTGTGTTCGAATTAATGAACAAAACCCCCAAAGTCCATTTCCACGTCACCATTTTCCGTCTTCCAAGTCCACAGTAA
mRNA sequenceShow/hide mRNA sequence
CCATCATTGTTAACACATTTTCATGATTTTGTTTATTTTTTTAATTTTTAATTTTGAATCTCATTAATTATGTATTTATAAACCAGTGGCATTATTTAAATTTAATCAAG
CTGAAAAAAACTTCAATCTCAGCCCAATGGCTCTATTCAGTTCCCCAAATCCCCATTTCTTCAAGATCATTCTCCACCAAACTCTCATCCAACAAAAGCTTGAGATTCCA
AACAAGTTCGTCAAGAACAATGGCGATTCTCTGTTATACAACAAGGTCACTCTCTGCCTTCCCGACGGCGCTAACTGGAAGCTCCAACTCAAGAAATTGGACGACAAAAT
CTGTTTCCTCAGAGGCTGGCCGGAATTCGTCCAGTTTTACTCTGTCCAACCTGGTTATTTTCTTGTGTTCCAGTTGAAAGCTATTTGCTGCTTCAGTGTCCTCATTTTCG
ATACCTCTGCTACCGAAATCGATTATCCAACGCGCCGACCGACGGTTCTGATTCCCAAAAGCGAAAATGAGGATGAAGAGGAATCTGTTCAGATACTGAATGAGGCGGTT
TTGAAGAAGAGAAGAAGAGACAAAGACGAAGAAACAGCGGCCTATTGTTCGTTCCGAGAGATGAAGAAGATGATGAGGAAGAATGTGAAGATCAAGATCGCGAAGTATCG
AGGATTCACTACGCCTCAAGGATTCAGCGATGAAGATGAAGATGAAGATGAAGATGAAGATGAAGATCTGGAAAGGAATTACTCACGGAGACAGAGTAATTACAGAGGAT
CAGCGTATAATGAGAGAGATGACGGCCGATCCAGTCCGGAATCGATGAGACCGATGAATCCACGGAAGACGCCGCAGGAATTGACGGAGAATCAATTGGTAGTTCTGAGG
AGAGCGAGTTCGTTCAAATGTAGGACGAATAATCCTTCATTCATGGTGACAATGAGGCCTTCCTACATCCAAACAGGGAATTACCTGAGCATGCCGAGGATCTTTACAGA
GAGATACATAAAGGAATCGGTGGATGTGAAGCTGGAGGTGGGCGACGGGAGGAGTTGGAGAGTGTGGTGTGGCGTGCGGTGGGCGTTCACACGGCGGCGAACGGAGTTGA
AAGGCGGTTGGAAAAGATTCGCCGTTGATAATGAGTTGGAAGAAGGGGACATTTGTGTGTTCGAATTAATGAACAAAACCCCCAAAGTCCATTTCCACGTCACCATTTTC
CGTCTTCCAAGTCCACAGTAAATTCATCGCAATAATGTTTTACGTTATGTGTTATTATGCACTTTAATATTTTTAAAAATGTTAACTCTGAAAAATATTTTATCTTCATT
TTGTTAGGATTATATCTTATGAACTCATTTTGGTGC
Protein sequenceShow/hide protein sequence
MALFSSPNPHFFKIILHQTLIQQKLEIPNKFVKNNGDSLLYNKVTLCLPDGANWKLQLKKLDDKICFLRGWPEFVQFYSVQPGYFLVFQLKAICCFSVLIFDTSATEIDY
PTRRPTVLIPKSENEDEEESVQILNEAVLKKRRRDKDEETAAYCSFREMKKMMRKNVKIKIAKYRGFTTPQGFSDEDEDEDEDEDEDLERNYSRRQSNYRGSAYNERDDG
RSSPESMRPMNPRKTPQELTENQLVVLRRASSFKCRTNNPSFMVTMRPSYIQTGNYLSMPRIFTERYIKESVDVKLEVGDGRSWRVWCGVRWAFTRRRTELKGGWKRFAV
DNELEEGDICVFELMNKTPKVHFHVTIFRLPSPQ