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Lsi10G005920 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G005920
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNase H domain-containing protein
Genome locationchr10:8564009..8566975
RNA-Seq ExpressionLsi10G005920
SyntenyLsi10G005920
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045848.1 hypothetical protein E6C27_scaffold243G003810 [Cucumis melo var. makuwa]1.3e-1868.25Show/hide
Query:  ILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPGVVVPTEDVTDTKTQPTRSTNLKS
        +LVVCK C+KYTWKGCGRHLP LYK VEKGKHC CRPWPGVVVP EDV   K    +S+++ +
Subjt:  ILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPGVVVPTEDVTDTKTQPTRSTNLKS

KAG6605256.1 hypothetical protein SDJN03_02573, partial [Cucurbita argyrosperma subsp. sororia]2.4e-2064Show/hide
Query:  MCILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPG-VVVPTEDVTDTKTQPTRSTNLKSSVPTGTLAD
        MC LV CK CNK +WKGCG HLP+LY  +EKGKHC+CRPWPG VVVP +D  D KT P    N KSSVP G   D
Subjt:  MCILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPG-VVVPTEDVTDTKTQPTRSTNLKSSVPTGTLAD

KAG7035219.1 hypothetical protein SDJN02_02014 [Cucurbita argyrosperma subsp. argyrosperma]2.4e-2064Show/hide
Query:  MCILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPG-VVVPTEDVTDTKTQPTRSTNLKSSVPTGTLAD
        MC LV CK CNK +WKGCG HLP+LY  +EKGKHC+CRPWPG VVVP +D  D KT P    N KSSVP G   D
Subjt:  MCILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPG-VVVPTEDVTDTKTQPTRSTNLKSSVPTGTLAD

KGN62035.1 hypothetical protein Csa_006238 [Cucumis sativus]2.8e-2172.86Show/hide
Query:  MCILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPGVVVPTEDVTDTKTQPTRSTNLKSSVPTG
        MC+LVVCK C+KYTWKGCGRHLP LYK VEKGKHC+C PWPGVVVP EDV DT T+P++     SSV TG
Subjt:  MCILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPGVVVPTEDVTDTKTQPTRSTNLKSSVPTG

OAY35386.1 hypothetical protein MANES_12G097400v8 [Manihot esculenta]8.0e-1658.06Show/hide
Query:  MCILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPGVVVPTEDVTDTKTQPTRSTN
        MCI V CKQC KY+W GCG+HL  +Y  ++KGKHC CRPWPGV++PTE    T+  P  ST+
Subjt:  MCILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPGVVVPTEDVTDTKTQPTRSTN

TrEMBL top hitse value%identityAlignment
A0A0A0LJK5 Uncharacterized protein1.4e-2172.86Show/hide
Query:  MCILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPGVVVPTEDVTDTKTQPTRSTNLKSSVPTG
        MC+LVVCK C+KYTWKGCGRHLP LYK VEKGKHC+C PWPGVVVP EDV DT T+P++     SSV TG
Subjt:  MCILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPGVVVPTEDVTDTKTQPTRSTNLKSSVPTG

A0A2C9UV86 Uncharacterized protein3.9e-1658.06Show/hide
Query:  MCILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPGVVVPTEDVTDTKTQPTRSTN
        MCI V CKQC KY+W GCG+HL  +Y  ++KGKHC CRPWPGV++PTE    T+  P  ST+
Subjt:  MCILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPGVVVPTEDVTDTKTQPTRSTN

A0A3N7F5W7 Uncharacterized protein8.6e-1657.58Show/hide
Query:  MCILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPGVVVPTEDVTDTKTQPTRSTNLKSS
        MC  V CKQCNKY+W GCG HL  +Y G+EKGKHC+C+PWPGVV+ TE+ T  + QP R+ +  S+
Subjt:  MCILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPGVVVPTEDVTDTKTQPTRSTNLKSS

A0A5A7TSL2 Uncharacterized protein6.4e-1968.25Show/hide
Query:  ILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPGVVVPTEDVTDTKTQPTRSTNLKS
        +LVVCK C+KYTWKGCGRHLP LYK VEKGKHC CRPWPGVVVP EDV   K    +S+++ +
Subjt:  ILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPGVVVPTEDVTDTKTQPTRSTNLKS

U5G557 Uncharacterized protein8.6e-1657.58Show/hide
Query:  MCILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPGVVVPTEDVTDTKTQPTRSTNLKSS
        MC  V CKQCNKY+W GCG HL  +Y G+EKGKHC+C+PWPGVV+ TE+ T  + QP R+ +  S+
Subjt:  MCILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPGVVVPTEDVTDTKTQPTRSTNLKSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTATTCTTGTGGTGTGCAAGCAGTGCAATAAGTATACATGGAAGGGCTGTGGCCGCCATCTTCCTGAGCTCTACAAGGGCGTTGAGAAGGGAAAGCACTGC
TCTTGCCGCCCTTGGCCGGGCGTCGTTGTGCCAACGGAAGATGTCACCGACACCAAGACGCAACCGACTCGGTCAACGAACCTGAAATCATCTGTCCCTACAGGT
ACGCTCGCCGATGACTGCTTTAAGAGTTGGAGTTGGTTTGTGCAGGTAAGACAGTTGTTAAAGAAGCTTAAGGCAGTTTGGGAGTACATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTATTCTTGTGGTGTGCAAGCAGTGCAATAAGTATACATGGAAGGGCTGTGGCCGCCATCTTCCTGAGCTCTACAAGGGCGTTGAGAAGGGAAAGCACTGC
TCTTGCCGCCCTTGGCCGGGCGTCGTTGTGCCAACGGAAGATGTCACCGACACCAAGACGCAACCGACTCGGTCAACGAACCTGAAATCATCTGTCCCTACAGGT
ACGCTCGCCGATGACTGCTTTAAGAGTTGGAGTTGGTTTGTGCAGGTAAGACAGTTGTTAAAGAAGCTTAAGGCAGTTTGGGAGTACATGTAG
Protein sequenceShow/hide protein sequence
MCILVVCKQCNKYTWKGCGRHLPELYKGVEKGKHCSCRPWPGVVVPTEDVTDTKTQPTRSTNLKSSVPTGTLADDCFKSWSWFVQVRQLLKKLKAVWEYM