; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi10G005950 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G005950
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase
Genome locationchr10:8580528..8584701
RNA-Seq ExpressionLsi10G005950
SyntenyLsi10G005950
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605258.1 hypothetical protein SDJN03_02575, partial [Cucurbita argyrosperma subsp. sororia]5.3e-6980.32Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL
        MSD  D+DSDAPEEFTAEQG+QQDEEIRKVQKES AR          VVREGKERRR WAEKKTPR SKKGE VED+AE  R NDQ+SKLGMLPSN+VQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL

Query:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK
        L +REKQVFSSDPGDEKPA K K KRKK+K SGI+TVLL+ER PSQCLQNSLEFLKKRKMNI RSSSVLDN NQALRLLS+SGLLTKK
Subjt:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK

KAG7035221.1 hypothetical protein SDJN02_02016, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-6980.85Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL
        MSD  D+DSDAPEEFTAEQG+QQDEEIRKVQKES AR          VVREGKERRR WAEKKTPR SKKGE VED+AE  R NDQ+SKLGMLPSN+VQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL

Query:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK
        L +REKQVFSSDPGDEKPA K K KRKK+K SGIETVLL+ER PSQCLQNSLEFLKKRKMNI RSSSVLDN NQALRLLS+SGLLTKK
Subjt:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK

XP_004148046.1 uncharacterized protein LOC101208336 [Cucumis sativus]1.1e-7484.57Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL
        MSDRE++DSDAPEEFTAEQGVQQDEEIRKVQKESKAR          V+REGKERRRLWAEKKTPRPSKKGEIVEDLAEP R++D+ISKLG LPSNIVQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL

Query:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK
        LVDREKQVFSSD GDEKPAIKPK KRKKTK SGIETVLL+ERTPS CLQNSLEFLKKRKMN++RSS+VL NPNQA RLLS+SGLLTKK
Subjt:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK

XP_008457855.1 PREDICTED: uncharacterized protein LOC103497440 [Cucumis melo]1.0e-7283.07Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL
        MSDRE++DSDAPEEFTAEQGVQQDEEIRKVQ ESKAR          V+REGKERRRLWAEKKTPRPSKKGEIVEDLAEP R++D++SKLG LPSN+VQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL

Query:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTK-ISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK
        LVDREKQVFSSD GDEKPAIKPK KRKKTK  SGIETVLLSERTPS CLQNSLEFLKKRKMN++RSS+VL+NPNQA RLLS+SGLLTKK
Subjt:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTK-ISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK

XP_038901892.1 uncharacterized protein LOC120088571 [Benincasa hispida]5.2e-7788.89Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRD-NDQISKLGMLPSNIVQ
        MSDRED+DSDAPEEFTAEQGVQQDEEIRKVQKESKAR          VVREGKERRRLWAEKKTPRPSKKGE VEDLAEP RD +DQISKLGMLPSNIVQ
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRD-NDQISKLGMLPSNIVQ

Query:  LLVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK
        LLVDREKQVFSSDP DEKPAIKPK KRKKTK SGIETVLLSERTPSQCL NSLEFLKKRKMNI+RSSSVLDNPNQALRLLSTSGLL KK
Subjt:  LLVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK

TrEMBL top hitse value%identityAlignment
A0A0A0LM07 Uncharacterized protein5.3e-7584.57Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL
        MSDRE++DSDAPEEFTAEQGVQQDEEIRKVQKESKAR          V+REGKERRRLWAEKKTPRPSKKGEIVEDLAEP R++D+ISKLG LPSNIVQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL

Query:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK
        LVDREKQVFSSD GDEKPAIKPK KRKKTK SGIETVLL+ERTPS CLQNSLEFLKKRKMN++RSS+VL NPNQA RLLS+SGLLTKK
Subjt:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK

A0A1S3C749 uncharacterized protein LOC1034974405.0e-7383.07Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL
        MSDRE++DSDAPEEFTAEQGVQQDEEIRKVQ ESKAR          V+REGKERRRLWAEKKTPRPSKKGEIVEDLAEP R++D++SKLG LPSN+VQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL

Query:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTK-ISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK
        LVDREKQVFSSD GDEKPAIKPK KRKKTK  SGIETVLLSERTPS CLQNSLEFLKKRKMN++RSS+VL+NPNQA RLLS+SGLLTKK
Subjt:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTK-ISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK

A0A5A7TWK6 Uncharacterized protein5.0e-7383.07Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL
        MSDRE++DSDAPEEFTAEQGVQQDEEIRKVQ ESKAR          V+REGKERRRLWAEKKTPRPSKKGEIVEDLAEP R++D++SKLG LPSN+VQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL

Query:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTK-ISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK
        LVDREKQVFSSD GDEKPAIKPK KRKKTK  SGIETVLLSERTPS CLQNSLEFLKKRKMN++RSS+VL+NPNQA RLLS+SGLLTKK
Subjt:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTK-ISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK

A0A6J1DXW1 uncharacterized protein LOC1110251622.8e-6879.68Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL
        MSD ED+DSDAPEEFTAEQG+QQD+EI KVQ ESKAR          VVREGKERRRLWAEKKTPRPSKKGE VED+AE     DQ SKLGMLPSN+VQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL

Query:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTK
        L DREKQVFSSDPGDEKPA KPK KRKKTK SGIETV+L++R P+QCLQNS+EFLKKRKMNI RSSSVLDNPNQALR LS+SGLLTK
Subjt:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTK

A0A6J1G7P4 uncharacterized protein LOC1114514985.7e-6980.32Show/hide
Query:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL
        MSD  D+DSDAPEEFTAEQG+QQDEEIRKVQKES AR          VVREGKERRR WAEKKTPR SKK E VED+AE  R NDQ+SKLGMLPSN+VQL
Subjt:  MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQL

Query:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK
        L +REKQVFSSDPGDEKPA K K KRKK+K SGIETVLL+ER PSQCLQNSLEFLKKRKMNI RSSSVLDN NQALRLLS+SGLLTKK
Subjt:  LVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G37090.1 unknown protein1.5e-2945.08Show/hide
Query:  MSDRE--DSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLA---EPLRDNDQISKLGMLPS
        MSD +  DSDSDAPEE T EQ   ++E + K+Q+E+K R          V RE KERR+L AE+ T R S+K EI+ED+    EP  +++ ++  G L  
Subjt:  MSDRE--DSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLA---EPLRDNDQISKLGMLPS

Query:  NIVQLLVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK
        +I+  L +REKQ   SD  +E+  I   P++KK K SGIETV+  E  P +CL+  L+FLK R+  + RSSSV+ N  QALR L+T   L KK
Subjt:  NIVQLLVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK

AT4G37090.2 unknown protein3.7e-2845.08Show/hide
Query:  MSDRE--DSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLA---EPLRDNDQISKLGMLPS
        MSD +  DSDSDAPEE T EQ   ++E + K+Q+E+K R          V RE KERR+L AE+ T R S+K EI+ED+    EP  +++ ++  G L  
Subjt:  MSDRE--DSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLA---EPLRDNDQISKLGMLPS

Query:  NIVQLLVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK
        +I+  L +REKQ   SD  +E+  I   P++KK K SGIETV+  E  P +CL+  L+FLK R+  + RSSSV+ N  QALR L+T   L KK
Subjt:  NIVQLLVDREKQVFSSDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGACAGAGAAGATTCCGATTCGGACGCCCCCGAGGAGTTCACCGCCGAGCAGGGAGTACAGCAGGATGAAGAGATTAGAAAAGTTCAAAAAGAAAGTAAGGCCAG
GTGTGTACTCAATCCGTATTTCCCATTAGCGGTTGTTCGTGAAGGGAAAGAACGTCGTAGACTGTGGGCTGAAAAGAAAACACCACGCCCATCTAAAAAGGGTGAAATTG
TCGAAGATTTAGCAGAACCCCTTAGAGATAATGATCAAATTAGCAAGTTGGGAATGCTTCCTAGTAACATCGTCCAACTGCTTGTAGACCGTGAGAAACAAGTTTTCTCT
TCAGATCCAGGCGACGAAAAGCCTGCAATTAAGCCAAAACCAAAGAGGAAGAAAACCAAAATCTCCGGGATTGAAACGGTTCTTTTAAGCGAAAGAACACCGTCTCAATG
TTTACAAAACTCCTTGGAATTTTTGAAGAAAAGGAAGATGAATATTTCAAGATCATCATCGGTTCTCGACAATCCTAACCAAGCGTTACGGCTTCTTTCTACATCTGGCT
TACTAACTAAGAAATAG
mRNA sequenceShow/hide mRNA sequence
CTTGAACCGCCAAACATCTGACACGTCAACAAATGGAAGGGTAAAAGTGGGATTCAGAAAAGCGTATTGGGCCGAAGCCGATATACAAAGCCCATTAACATAATTTTATG
AAATTTGCTTTTACATTCGATTTCAAGCAAAACTTCGTCTGTTTGGTGTTTCTTCAAATCTTCACAGAAACCCTAAAAAGAGAGTTGGGTTCAGATGTCGGACAGAGAAG
ATTCCGATTCGGACGCCCCCGAGGAGTTCACCGCCGAGCAGGGAGTACAGCAGGATGAAGAGATTAGAAAAGTTCAAAAAGAAAGTAAGGCCAGGTGTGTACTCAATCCG
TATTTCCCATTAGCGGTTGTTCGTGAAGGGAAAGAACGTCGTAGACTGTGGGCTGAAAAGAAAACACCACGCCCATCTAAAAAGGGTGAAATTGTCGAAGATTTAGCAGA
ACCCCTTAGAGATAATGATCAAATTAGCAAGTTGGGAATGCTTCCTAGTAACATCGTCCAACTGCTTGTAGACCGTGAGAAACAAGTTTTCTCTTCAGATCCAGGCGACG
AAAAGCCTGCAATTAAGCCAAAACCAAAGAGGAAGAAAACCAAAATCTCCGGGATTGAAACGGTTCTTTTAAGCGAAAGAACACCGTCTCAATGTTTACAAAACTCCTTG
GAATTTTTGAAGAAAAGGAAGATGAATATTTCAAGATCATCATCGGTTCTCGACAATCCTAACCAAGCGTTACGGCTTCTTTCTACATCTGGCTTACTAACTAAGAAATA
GCATTTTTGTTTCAAGGTCTATTTATTGCATCGCTGTTAGCTACTTCAGGACAATGTATAATGAATGTACTTGAGAATTGGTTCCCGGTAGCAAAAATGTTTGTGTTCTT
ATAATGGTCATAGCATAGCAGAAATTGAAAATGGTGAGAGCATTGATGTTGGTAAATTAATGATTTTCATTATGTTGTTTCGACCACCAGGGGC
Protein sequenceShow/hide protein sequence
MSDREDSDSDAPEEFTAEQGVQQDEEIRKVQKESKARCVLNPYFPLAVVREGKERRRLWAEKKTPRPSKKGEIVEDLAEPLRDNDQISKLGMLPSNIVQLLVDREKQVFS
SDPGDEKPAIKPKPKRKKTKISGIETVLLSERTPSQCLQNSLEFLKKRKMNISRSSSVLDNPNQALRLLSTSGLLTKK