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Lsi10G006050 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G006050
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr10:8635051..8638461
RNA-Seq ExpressionLsi10G006050
SyntenyLsi10G006050
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5931647.1 hypothetical protein HYC85_027818 [Camellia sinensis]2.2e-0757.63Show/hide
Query:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSGWDPSLLITP
        L+H+IQDLID + I PP  ++PNVTTNPLPTH   PPP  IN I+   + +DPS+ ITP
Subjt:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSGWDPSLLITP

KAF5932260.1 hypothetical protein HYC85_028431 [Camellia sinensis]2.9e-0738.58Show/hide
Query:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSGWDPSLLITPAGEMGETDGRDMIGIWETRLSPHLEFTCSGGMISTTISQPL
        L+H+IQDLID + I PP  ++PNVTTNPLP H   PPP  IN I+   + +DPS+ ITP+           +   E  LS   +F C    ISTT  +P 
Subjt:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSGWDPSLLITPAGEMGETDGRDMIGIWETRLSPHLEFTCSGGMISTTISQPL

Query:  NNPSNYSRKSQKVKHLSFTLARIPQPF
           +      Q + +  F  A+I Q F
Subjt:  NNPSNYSRKSQKVKHLSFTLARIPQPF

KAF5932778.1 hypothetical protein HYC85_028949 [Camellia sinensis]1.0e-0744.79Show/hide
Query:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSGWDPSLLITPA----GEMGETDGRD---MIGIWETRLSPHLEFTCSG
        L+H+IQDLID + I PP  ++PNVTTNPLP H   PPP  IN I+   + +DPS+ ITP+     E+   D  D   M+ I  TR  P +  T  G
Subjt:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSGWDPSLLITPA----GEMGETDGRD---MIGIWETRLSPHLEFTCSG

KAF5933059.1 hypothetical protein HYC85_029230 [Camellia sinensis]3.8e-0758.33Show/hide
Query:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSGWDPSLLITPA
        L+H+IQDLID+  I PP   +PNVTTNPLPTH  VPPP  IN I    + +DPS+ ITP+
Subjt:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSGWDPSLLITPA

KAF5933094.1 hypothetical protein HYC85_029265 [Camellia sinensis]3.8e-0757.63Show/hide
Query:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTHAVPPPAN-INMIEPTFSGWDPSLLITP
        L+H+IQDLID + I PP  ++PNVTTNPLP H  PPP N IN I+   + +DPS+ ITP
Subjt:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTHAVPPPAN-INMIEPTFSGWDPSLLITP

TrEMBL top hitse value%identityAlignment
A0A7J7FU58 Ribonuclease H1.1e-0757.63Show/hide
Query:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSGWDPSLLITP
        L+H+IQDLID + I PP  ++PNVTTNPLPTH   PPP  IN I+   + +DPS+ ITP
Subjt:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSGWDPSLLITP

A0A7J7FV54 Retrotrans_gag domain-containing protein1.4e-0738.58Show/hide
Query:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSGWDPSLLITPAGEMGETDGRDMIGIWETRLSPHLEFTCSGGMISTTISQPL
        L+H+IQDLID + I PP  ++PNVTTNPLP H   PPP  IN I+   + +DPS+ ITP+           +   E  LS   +F C    ISTT  +P 
Subjt:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSGWDPSLLITPAGEMGETDGRDMIGIWETRLSPHLEFTCSGGMISTTISQPL

Query:  NNPSNYSRKSQKVKHLSFTLARIPQPF
           +      Q + +  F  A+I Q F
Subjt:  NNPSNYSRKSQKVKHLSFTLARIPQPF

A0A7J7FXM9 Retrotrans_gag domain-containing protein1.8e-0758.33Show/hide
Query:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSGWDPSLLITPA
        L+H+IQDLID+  I PP   +PNVTTNPLPTH  VPPP  IN I    + +DPS+ ITP+
Subjt:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSGWDPSLLITPA

A0A7J7FYW8 Uncharacterized protein4.8e-0844.79Show/hide
Query:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSGWDPSLLITPA----GEMGETDGRD---MIGIWETRLSPHLEFTCSG
        L+H+IQDLID + I PP  ++PNVTTNPLP H   PPP  IN I+   + +DPS+ ITP+     E+   D  D   M+ I  TR  P +  T  G
Subjt:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTH-AVPPPANINMIEPTFSGWDPSLLITPA----GEMGETDGRD---MIGIWETRLSPHLEFTCSG

A0A7J7G1F2 Retrotrans_gag domain-containing protein1.8e-0757.63Show/hide
Query:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTHAVPPPAN-INMIEPTFSGWDPSLLITP
        L+H+IQDLID + I PP  ++PNVTTNPLP H  PPP N IN I+   + +DPS+ ITP
Subjt:  LKHDIQDLIDSEKIEPPRANRPNVTTNPLPTHAVPPPAN-INMIEPTFSGWDPSLLITP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGACATAGACAAATACGATGGAACTGGCTGTCCTAAGGCTCATCCGCTGCTGTTTTTCTCAAATGTAGCGGCCACTCGTATTGAAGATGCTATCTACAATGGGAC
TCATGGATCACAGGTCAAAGAGGCAGATCCAAACGGAAAGAAGATAGCCCTGGGGGAACAAGCAAGAATAGTGAAGTCAATGCTGAAACATGACATCCAAGACCTTATTG
ATTCAGAGAAAATTGAGCCACCAAGGGCAAACCGCCCCAATGTCACTACCAATCCCCTCCCCACTCATGCTGTACCTCCTCCTGCCAATATAAACATGATCGAGCCGACA
TTTTCAGGTTGGGATCCGTCTCTCCTTATCACGCCAGCCGGAGAAATGGGAGAAACAGATGGTAGAGACATGATTGGAATCTGGGAGACGAGATTGAGCCCCCACCTCGA
GTTCACATGCTCCGGTGGGATGATTTCTACGACAATCTCCCAACCCCTGAACAACCCCTCCAATTACTCCCGGAAATCCCAGAAAGTGAAACATTTATCCTTTACCCTCG
CTCGAATTCCTCAACCCTTTGATGAAAGCCCTAGTTGCTCGGACCCTACAGACCTAAAACCCCTCTCCGCATCTTTGTGGATGGACTCCGACGAACTGGATCAATACGGC
ACCAATGATGATATGGATTTTGTCAAGAATGAGGAGGCCCAATACATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGCGGGGCCAAACACATGTGTCATTGGA
TACTTCACCATCTCCTCCCGTCAAAATAATTTTCCACATCCGGATGGCAAAGACTATCACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTGACATAGACAAATACGATGGAACTGGCTGTCCTAAGGCTCATCCGCTGCTGTTTTTCTCAAATGTAGCGGCCACTCGTATTGAAGATGCTATCTACAATGGGAC
TCATGGATCACAGGTCAAAGAGGCAGATCCAAACGGAAAGAAGATAGCCCTGGGGGAACAAGCAAGAATAGTGAAGTCAATGCTGAAACATGACATCCAAGACCTTATTG
ATTCAGAGAAAATTGAGCCACCAAGGGCAAACCGCCCCAATGTCACTACCAATCCCCTCCCCACTCATGCTGTACCTCCTCCTGCCAATATAAACATGATCGAGCCGACA
TTTTCAGGTTGGGATCCGTCTCTCCTTATCACGCCAGCCGGAGAAATGGGAGAAACAGATGGTAGAGACATGATTGGAATCTGGGAGACGAGATTGAGCCCCCACCTCGA
GTTCACATGCTCCGGTGGGATGATTTCTACGACAATCTCCCAACCCCTGAACAACCCCTCCAATTACTCCCGGAAATCCCAGAAAGTGAAACATTTATCCTTTACCCTCG
CTCGAATTCCTCAACCCTTTGATGAAAGCCCTAGTTGCTCGGACCCTACAGACCTAAAACCCCTCTCCGCATCTTTGTGGATGGACTCCGACGAACTGGATCAATACGGC
ACCAATGATGATATGGATTTTGTCAAGAATGAGGAGGCCCAATACATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGCGGGGCCAAACACATGTGTCATTGGA
TACTTCACCATCTCCTCCCGTCAAAATAATTTTCCACATCCGGATGGCAAAGACTATCACTTGA
Protein sequenceShow/hide protein sequence
MPDIDKYDGTGCPKAHPLLFFSNVAATRIEDAIYNGTHGSQVKEADPNGKKIALGEQARIVKSMLKHDIQDLIDSEKIEPPRANRPNVTTNPLPTHAVPPPANINMIEPT
FSGWDPSLLITPAGEMGETDGRDMIGIWETRLSPHLEFTCSGGMISTTISQPLNNPSNYSRKSQKVKHLSFTLARIPQPFDESPSCSDPTDLKPLSASLWMDSDELDQYG
TNDDMDFVKNEEAQYMASKSHRDPVLRMRGQTHVSLDTSPSPPVKIIFHIRMAKTIT