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Lsi10G006070 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi10G006070
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description30S ribosomal protein S11, chloroplastic
Genome locationchr10:8639327..8639636
RNA-Seq ExpressionLsi10G006070
SyntenyLsi10G006070
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR001971 - Ribosomal protein S11
IPR036967 - Ribosomal protein S11 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
DAD49694.1 TPA_asm: hypothetical protein HUJ06_019182 [Nelumbo nucifera]3.9e-2578.75Show/hide
Query:  KFQQYNCDCYKCTGSDNFWSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGI
        KFQQ   DCY+C G    WSS  TCGF+GTRRGTPFAAQTA GNAI  VVDQGMQRAEVMIKGPGLGRDAALRAI RSG+
Subjt:  KFQQYNCDCYKCTGSDNFWSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGI

QWY86723.1 ribosomal protein S11 [Prioria oxyphylla]1.4e-2290.48Show/hide
Query:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL
        WSS  TCGFKGTRRGTPFAAQTA GNAIW V DQGMQRAEVMIKGPGLGRDAALRAI RSGIL
Subjt:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL

XP_040943184.1 30S ribosomal protein S11, chloroplastic-like [Gossypium hirsutum]1.4e-2293.65Show/hide
Query:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL
        WSS STCGFKGTRRGTPFAAQTA GNAI AVVDQGMQRAEVMIKGPGLGRDAALRAI RSGIL
Subjt:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL

YP_009559510.1 ribosomal protein S11 [Elaeagnus angustifolia]3.1e-2292.06Show/hide
Query:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL
        WSS  TCGFKGTRRGTPFAAQTA GNAI AVVDQGMQRAEVMIKGPGLGRDAALRAI RSGIL
Subjt:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL

YP_009767040.1 ribosomal protein S11 [Tachigali costaricensis]8.2e-2390.48Show/hide
Query:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL
        WSS  TCGFKGTRRGTPFAAQTA GNAIW V DQGMQRAEVMIKGPGLGRDAALRAI RSGIL
Subjt:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL

TrEMBL top hitse value%identityAlignment
A0A2K9VR21 30S ribosomal protein S11, chloroplastic1.5e-2290.48Show/hide
Query:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL
        WSS  TCGFKGTRRGTPFAAQTA GNAI  VVDQGMQRAEVMIKG GLGRDAALRAICRSGIL
Subjt:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL

A0A3Q9R015 30S ribosomal protein S11, chloroplastic1.5e-2292.06Show/hide
Query:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL
        WSS  TCGFKGTRRGTPFAAQTA GNAI AVVDQGMQRAEVMIKGPGLGRDAALRAI RSGIL
Subjt:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL

A0A410HFC3 30S ribosomal protein S11, chloroplastic2.0e-2292.06Show/hide
Query:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL
        WSS  TCGFKGTRRGTPFAAQTA GNAI AVVDQGMQRAEVMIKGPGLGRDAALRAI RSGIL
Subjt:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL

A0A6H0E8A1 Ribosomal protein S114.0e-2390.48Show/hide
Query:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL
        WSS  TCGFKGTRRGTPFAAQTA GNAIW V DQGMQRAEVMIKGPGLGRDAALRAI RSGIL
Subjt:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL

H9LG03 30S ribosomal protein S11, chloroplastic2.0e-2292.06Show/hide
Query:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL
        WSS  TCGFKGTRRGTPFAAQTA GNAI AVVDQGMQRAEVMIKGPGLGRDAALRAI RSGIL
Subjt:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL

SwissProt top hitse value%identityAlignment
A0ZZ68 30S ribosomal protein S11, chloroplastic5.3e-2592.06Show/hide
Query:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL
        WSS  TCGFKGTRRGTPFAAQTA GNAI AVVDQGMQRAEVMIKGPGLGRDAALRAI RSGIL
Subjt:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL

B1A968 30S ribosomal protein S11, chloroplastic1.2e-2490.48Show/hide
Query:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL
        WSS  TCGF+GTRRGTPFAAQTA GNAI AVVDQGMQRAEVMIKGPGLGRDAALRAI RSGIL
Subjt:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL

Q2L937 30S ribosomal protein S11, chloroplastic5.3e-2592.06Show/hide
Query:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL
        WSS  TCGFKGTRRGTPFAAQTA GNAI AVVDQGMQRAEVMIKGPGLGRDAALRAI RSGIL
Subjt:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL

Q3V501 30S ribosomal protein S11, chloroplastic1.6e-2490.48Show/hide
Query:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL
        WSS  TCGFKGTRRGTPFAAQTA GNAI  VVDQGMQRAEVMIKGPGLGRDAALRAI RSGIL
Subjt:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL

Q6EW19 30S ribosomal protein S11, chloroplastic5.3e-2592.06Show/hide
Query:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL
        WSS  TCGFKGTRRGTPFAAQTA GNAI AVVDQGMQRAEVMIKGPGLGRDAALRAI RSGIL
Subjt:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL

Arabidopsis top hitse value%identityAlignment
ATCG00750.1 ribosomal protein S114.2e-2588.89Show/hide
Query:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL
        WSS  TCGF+GTRRGTPFAAQTA GNAI AVVDQGMQRAEV IKGPGLGRDAALRAI RSGIL
Subjt:  WSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATATAATTGTGACTGTTACAAATGTACGGGGTCAGATAATTTTTGGTCCTCCACCAGTACTTG
TGGATTCAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGTAGGAAATGCTATTTGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAA
AGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTTGTAGAAGCGGTATACTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAACAATATAATTGTGACTGTTACAAATGTACGGGGTCAGATAATTTTTGGTCCTCCACCAGTACTTG
TGGATTCAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGTAGGAAATGCTATTTGGGCAGTAGTGGATCAAGGTATGCAACGAGCCGAAGTTATGATAA
AGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTTGTAGAAGCGGTATACTATGA
Protein sequenceShow/hide protein sequence
MDNTKGRYSCSSKFQQYNCDCYKCTGSDNFWSSTSTCGFKGTRRGTPFAAQTAVGNAIWAVVDQGMQRAEVMIKGPGLGRDAALRAICRSGIL